jgi.p|Nanoce1779_2|611977, mRNA_10328 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|611977
Unique Name	mRNA_10328
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1163
Alignment location	scaffold_60:89723..91393 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	612063
Track	FilteredModels2
ProteinId	611977

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_60	supercontig	scaffold_60:89723..91393 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611977	gene_10328	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611977	mRNA_10328-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10328	CDS_10328	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_60:89723..91393+
coding sequence from alignment at scaffold_60:89723..91393+

mRNA sequence

>mRNA_10328 ID=mRNA_10328|Name=jgi.p|Nanoce1779_2|611977|organism=Nannochloropsis oceanica|type=mRNA|length=1163bp
GCTGGAAATCCTAGAGCTAAAGGTACTTGTCCTTCAATACTCATTCCCCC
GCTTCTTTCTCCCCTGCCCCACCCACCGACCAACCGACATACGCGCCTCA
CATCACAGGACGACTTTATCAAATTTATTCTCTCCGACACGGATGCCTCT
GTTGCCAATGCCTTGCGGCGGGTGATGATTGCTGAAGTCCCTACCTTGGC
CATCGATCTTGTGTCGTTCGAAGTGAACTCCTCCGTGCTGAATGACGAGT
ACCTCGCCCATCGCTTGGGCCTCATTCCCCTCCGCTCTACGAATCCGCGC
TACAAGAAGGTGGCTGACCTCAAGGACTTTCGAGACTGCGATTGTGACTT
GCATTGCCCCCGCTGCTCGGTCGAGCTGACGTTAGATGTGAACTACCACA
CCAAGAAGCAGCAGCTGGCACGGATGGAGGGCTTCGGGGAGGGAGGGATG
GAGGGAGAGGCCAGTGGCTTGCCCGTGAACGTGACGAGTGCGGACTTGAC
AGTGACAGAAGATGAGGAGCAGCAAGTGTGGGTAGAGCCGGCTCACTTCA
CGTCGGACGCAGAGAAAGACAGATTGGGTGACCCCGCCCAAGGCGGCATC
AGCATCGTGCAACTCGGGCCCGGACAAGCCGTGCGTCTGACGGCCATAGC
CAAGAAAGGCATAGGGAAAGAGCATGCCAAGTGGTCTCCTTGTGCTGTCG
CCACTTACACCAACGAGCCGATCCTCAGTATCAACAAGGAGGAGCACGAC
AAGCTCAGCCTGGAGAAGAAGAAGCAGCTGGTGGACTGCTGCCCAACCAA
AGTCTTCAAGCTCGACGAGCGAGAAAATGTGGTGGTGGCCCGGCCGCGCA
AGTGCATTTTTTGCAACGAGTGCCAGACGGTGTCCAAGGCACTCAAGGCG
CATCAAGACGACGATTTTGTCGTGCATCTGGCAGCGAACGAAGAGAAATT
TGTCTTTGCCGTGGAGACGACGGGGGCCTTGACAGCAGGGGAGGTGGTGG
AGAGTGCGTTGGAGATAGTGCTGGGGAAGATCACGGAGGTGCAGACTCAG
CTGGTGCACATAGCGAGGACAGGGGTCGTGTAGGGAGGGATGGAGGGACG
GAGGGATTGGGGGAGAGGTAAAGTAAAAGGATTAATTGGAGCATCGTGTG
AGATGAAGGAGGG

protein sequence of jgi.p|Nanoce1779_2|611977

>mRNA_10328-protein ID=mRNA_10328-protein|Name=jgi.p|Nanoce1779_2|611977|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MIAEVPTLAIDLVSFEVNSSVLNDEYLAHRLGLIPLRSTNPRYKKVADLK
DFRDCDCDLHCPRCSVELTLDVNYHTKKQQLARMEGFGEGGMEGEASGLP
VNVTSADLTVTEDEEQQVWVEPAHFTSDAEKDRLGDPAQGGISIVQLGPG
QAVRLTAIAKKGIGKEHAKWSPCAVATYTNEPILSINKEEHDKLSLEKKK
QLVDCCPTKVFKLDERENVVVARPRKCIFCNECQTVSKALKAHQDDDFVV
HLAANEEKFVFAVETTGALTAGEVVESALEIVLGKITEVQTQLVHIARTG
VV*

mRNA from alignment at scaffold_60:89723..91393+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10328 ID=mRNA_10328|Name=jgi.p|Nanoce1779_2|611977|organism=Nannochloropsis oceanica|type=mRNA|length=1671bp|location=Sequence derived from alignment at scaffold_60:89723..91393+ (Nannochloropsis oceanica)
GCTGGAAATCCTAGAGCTAAAGGTACTTGTCCTTCAATACTCATTCCCCC
GCTTCTTTCTCCCCTGCCCCACCCACCGACCAACCGACATACGCGCCTCA
CATCACAGGACGACTTTATCAAATTTATTCTCTCCGACACGGATGCCTCT
GTTGCCAATGCCTTGCGGCGGGTGATGATTGCTGAAGTCCCTACCTTGGC
CATCGATCTTGTGTCGTTCGAAGTGAACTCCTCCGTGCTGAATGACGAGT
ACCTCGCCCATCGCTTGGGTAGGTAGCCCCACACAACCAGAGAGCACGCT
CCGTTACCAGACACACATGATCCTCCTCACACTTCCTCCTACTCTCTGTA
TCTTCCACCTTGCAACCGTACAGCTCATCACTTACATACATGCAACGCCT
CTTTTACCCCCTTCCTTTTCCCCCCCCTCCCTCCCCTTCCTCCCAGGCCT
CATTCCCCTCCGCTCTACGAATCCGCGCTACAAGAAGGTGGCTGACCTCA
AGGACTTTCGAGACTGCGATTGTGACTTGCATTGCCCCCGCTGCTCGGTC
GAGCTGACGTTAGATGTGAACTACCACACCAAGAAGCAGCAGCTGGCACG
GATGGAGGGCTTCGGGGAGGGAGGGATGGAGGGAGAGGCCAGTGGCTTGC
CCGTGAACGTGACGAGTGCGGACTTGACAGTGACAGAAGATGAGGAGCAG
CAAGTGTGGGTAGAGCCGGCTCACTTCACGTCGGACGCAGAGAAAGACAG
ATTGGGGTGAGCGCAGTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTT
CCTTCCTTCCTTCCTCCCTCCCTCCCTCCTTCCTTCCTTCCTTTCTTCTT
CGAGGTATAATCTCCGTAGCCACGACAATTTTATCCACTCACATTCCCCC
CTTCCTCCATTCCTTCCCTCCTCCCTCCCCTCCCTCCCCTCCCCGCAGTG
ACCCCGCCCAAGGCGGCATCAGCATCGTGCAACTCGGGCCCGGACAAGCC
GTGCGTCTGACGGCCATAGCCAAGAAAGGCATAGGGAAAGAGCATGCCAA
GTGGTCTCCTTGTGCTGTCGCCACTTACACCAACGAGCCGATCCTCAGTA
TCAACAAGGAGGAGGTAGGCCTCTCCCTTCCTTCTCCTCCCTCCTTCCCT
CATTCCCTCACCTCCCCCCTCTCAACCCCAACCTGAACCCCCTCCCTCCT
CCAGTCATGTCACGCTCTTTCCCTCCCCCCCTCTTTCCCTGCCTGCCCCC
AGCACGACAAGCTCAGCCTGGAGAAGAAGAAGCAGCTGGTGGACTGCTGC
CCAACCAAAGTCTTCAAGCTCGACGAGCGAGAAAATGTGGTGGTGGCCCG
GCCGCGCAAGTGCATTTTTTGCAACGAGTGCCAGACGGTGTCCAAGGCAC
TCAAGGCGCATCAAGACGACGATTTTGTCGTGCATCTGGCAGCGAACGAA
GAGAAATTTGTCTTTGCCGTGGAGACGACGGGGGCCTTGACAGCAGGGGA
GGTGGTGGAGAGTGCGTTGGAGATAGTGCTGGGGAAGATCACGGAGGTGC
AGACTCAGCTGGTGCACATAGCGAGGACAGGGGTCGTGTAGGGAGGGATG
GAGGGACGGAGGGATTGGGGGAGAGGTAAAGTAAAAGGATTAATTGGAGC
ATCGTGTGAGATGAAGGAGGG

Coding sequence (CDS) from alignment at scaffold_60:89723..91393+

>mRNA_10328 ID=mRNA_10328|Name=jgi.p|Nanoce1779_2|611977|organism=Nannochloropsis oceanica|type=CDS|length=3636bp|location=Sequence derived from alignment at scaffold_60:89723..91393+ (Nannochloropsis oceanica)
ATGATTGCTGAAGTCCCTACCTTGGCCATCGATCTTGTGTCGTTCGAAGT
GAACTCCTCCGTGCTGAATGACGAGTACCTCGCCCATCGCTTGGGCCTCA
TTCCCCTCCGCTCTACGAATCCGCGCTACAAGAAGGTGGCTGACCTCAAG
GACTTTCGAGACTGCGATTGTGACTTGCATTGCCCCCGCTGCTCGGTCGA
GCTGACGTTAGATGTGAACTACCACACCAAGAAGCAGCAGCTGGCACGGA
TGGAGGGCTTCGGGGAGGGAGGGATGGAGGGAGAGGCCAGTGGCTTGCCC
GTGAACGTGACGAGTGCGGACTTGACAGTGACAGAAGATGAGGAGCAGCA
AGTGTGGGTAGAGCCGGCTCACTTCACGTCGGACGCAGAGAAAGACAGAT
TGGGTGACCCCGCCCAAGGCGGCATCAGCATCGTGCAACTCGGGCCCGGA
CAAGCCGTGCGTCTGACGGCCATAGCCAAGAAAGGCATAGGGAAAGAGCA
TGCCAAGTGGTCTCCTTGTGCTGTCGCCACTTACACCAACGAGCCGATCC
TCAGTATCAACAAGGAGGAGCACGACAAGCTCAGCCTGGAGAAGAAGAAG
CAGCTGGTGGACTGCTGCCCAACCAAAGTCTTCAAGCTCGACGAGCGAGA
AAATGTGGTGGTGGCCCGGCCGCGCAAGTGCATTTTTTGCAACGAGTGCC
AGACGGTGTCCAAGGCACTCAAGGCGCATCAAGACGACGATTTTGTCGTG
CATCTGGCAGCGAACGAAGAGAAATTTGTCTTTGCCGTGGAGACGACGGG
GGCCTTGACAGCAGGGGAGGTGGTGGAGAGTGCGTTGGAGATAGTGCTGG
GGAAGATCACGGAGGTGCAGACTCAGCTGGTGCACATAGCGAGGACAGGG
GTCGTGTAGATGATTGCTGAAGTCCCTACCTTGGCCATCGATCTTGTGTC
GTTCGAAGTGAACTCCTCCGTGCTGAATGACGAGTACCTCGCCCATCGCT
TGGGCCTCATTCCCCTCCGCTCTACGAATCCGCGCTACAAGAAGGTGGCT
GACCTCAAGGACTTTCGAGACTGCGATTGTGACTTGCATTGCCCCCGCTG
CTCGGTCGAGCTGACGTTAGATGTGAACTACCACACCAAGAAGCAGCAGC
TGGCACGGATGGAGGGCTTCGGGGAGGGAGGGATGGAGGGAGAGGCCAGT
GGCTTGCCCGTGAACGTGACGAGTGCGGACTTGACAGTGACAGAAGATGA
GGAGCAGCAAGTGTGGGTAGAGCCGGCTCACTTCACGTCGGACGCAGAGA
AAGACAGATTGGGTGACCCCGCCCAAGGCGGCATCAGCATCGTGCAACTC
GGGCCCGGACAAGCCGTGCGTCTGACGGCCATAGCCAAGAAAGGCATAGG
GAAAGAGCATGCCAAGTGGTCTCCTTGTGCTGTCGCCACTTACACCAACG
AGCCGATCCTCAGTATCAACAAGGAGGAGCACGACAAGCTCAGCCTGGAG
AAGAAGAAGCAGCTGGTGGACTGCTGCCCAACCAAAGTCTTCAAGCTCGA
CGAGCGAGAAAATGTGGTGGTGGCCCGGCCGCGCAAGTGCATTTTTTGCA
ACGAGTGCCAGACGGTGTCCAAGGCACTCAAGGCGCATCAAGACGACGAT
TTTGTCGTGCATCTGGCAGCGAACGAAGAGAAATTTGTCTTTGCCGTGGA
GACGACGGGGGCCTTGACAGCAGGGGAGGTGGTGGAGAGTGCGTTGGAGA
TAGTGCTGGGGAAGATCACGGAGGTGCAGACTCAGCTGGTGCACATAGCG
AGGACAGGGGTCGTGTAGATGATTGCTGAAGTCCCTACCTTGGCCATCGA
TCTTGTGTCGTTCGAAGTGAACTCCTCCGTGCTGAATGACGAGTACCTCG
CCCATCGCTTGGGCCTCATTCCCCTCCGCTCTACGAATCCGCGCTACAAG
AAGGTGGCTGACCTCAAGGACTTTCGAGACTGCGATTGTGACTTGCATTG
CCCCCGCTGCTCGGTCGAGCTGACGTTAGATGTGAACTACCACACCAAGA
AGCAGCAGCTGGCACGGATGGAGGGCTTCGGGGAGGGAGGGATGGAGGGA
GAGGCCAGTGGCTTGCCCGTGAACGTGACGAGTGCGGACTTGACAGTGAC
AGAAGATGAGGAGCAGCAAGTGTGGGTAGAGCCGGCTCACTTCACGTCGG
ACGCAGAGAAAGACAGATTGGGTGACCCCGCCCAAGGCGGCATCAGCATC
GTGCAACTCGGGCCCGGACAAGCCGTGCGTCTGACGGCCATAGCCAAGAA
AGGCATAGGGAAAGAGCATGCCAAGTGGTCTCCTTGTGCTGTCGCCACTT
ACACCAACGAGCCGATCCTCAGTATCAACAAGGAGGAGCACGACAAGCTC
AGCCTGGAGAAGAAGAAGCAGCTGGTGGACTGCTGCCCAACCAAAGTCTT
CAAGCTCGACGAGCGAGAAAATGTGGTGGTGGCCCGGCCGCGCAAGTGCA
TTTTTTGCAACGAGTGCCAGACGGTGTCCAAGGCACTCAAGGCGCATCAA
GACGACGATTTTGTCGTGCATCTGGCAGCGAACGAAGAGAAATTTGTCTT
TGCCGTGGAGACGACGGGGGCCTTGACAGCAGGGGAGGTGGTGGAGAGTG
CGTTGGAGATAGTGCTGGGGAAGATCACGGAGGTGCAGACTCAGCTGGTG
CACATAGCGAGGACAGGGGTCGTGTAGATGATTGCTGAAGTCCCTACCTT
GGCCATCGATCTTGTGTCGTTCGAAGTGAACTCCTCCGTGCTGAATGACG
AGTACCTCGCCCATCGCTTGGGCCTCATTCCCCTCCGCTCTACGAATCCG
CGCTACAAGAAGGTGGCTGACCTCAAGGACTTTCGAGACTGCGATTGTGA
CTTGCATTGCCCCCGCTGCTCGGTCGAGCTGACGTTAGATGTGAACTACC
ACACCAAGAAGCAGCAGCTGGCACGGATGGAGGGCTTCGGGGAGGGAGGG
ATGGAGGGAGAGGCCAGTGGCTTGCCCGTGAACGTGACGAGTGCGGACTT
GACAGTGACAGAAGATGAGGAGCAGCAAGTGTGGGTAGAGCCGGCTCACT
TCACGTCGGACGCAGAGAAAGACAGATTGGGTGACCCCGCCCAAGGCGGC
ATCAGCATCGTGCAACTCGGGCCCGGACAAGCCGTGCGTCTGACGGCCAT
AGCCAAGAAAGGCATAGGGAAAGAGCATGCCAAGTGGTCTCCTTGTGCTG
TCGCCACTTACACCAACGAGCCGATCCTCAGTATCAACAAGGAGGAGCAC
GACAAGCTCAGCCTGGAGAAGAAGAAGCAGCTGGTGGACTGCTGCCCAAC
CAAAGTCTTCAAGCTCGACGAGCGAGAAAATGTGGTGGTGGCCCGGCCGC
GCAAGTGCATTTTTTGCAACGAGTGCCAGACGGTGTCCAAGGCACTCAAG
GCGCATCAAGACGACGATTTTGTCGTGCATCTGGCAGCGAACGAAGAGAA
ATTTGTCTTTGCCGTGGAGACGACGGGGGCCTTGACAGCAGGGGAGGTGG
TGGAGAGTGCGTTGGAGATAGTGCTGGGGAAGATCACGGAGGTGCAGACT
CAGCTGGTGCACATAGCGAGGACAGGGGTCGTGTAG

Synonyms

Publications