jgi.p|Nanoce1779_2|611967, mRNA_10326 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611967
Unique NamemRNA_10326
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length476
Alignment locationscaffold_60:86585..87060 -

Link to JBrowse

Properties
Property NameValue
TranscriptId612053
TrackFilteredModels2
ProteinId611967
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:86585..87060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611967gene_10326Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611967mRNA_10326-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10326CDS_10326Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10326 ID=mRNA_10326|Name=jgi.p|Nanoce1779_2|611967|organism=Nannochloropsis oceanica|type=mRNA|length=476bp
TGCTGCTGCTGAAGCTACCTATCCCCCCATCGTGCTGGGATGGGAGAGGC
GCCCTTCCATCCTCCCCTCCTCCTCCCCCTCCCCCTCGCCCTACTCCTCG
GTGCGCGCCATCCCTGTCCTGAGACCGCTCTCTCTCCTTCTCCCTCGACC
GGCCCCTTACCCCATCCCTCTCTCCCCCCCCCCCCTCTCTCATCCCCTCC
TGGTGCTGCCTTCCGCTTTCTCGAGCCCGAGTCTGCGGGCTGGGGGGGCG
GGAGGGAGGAAGGAGGGGGAAGGGGGGCAGGCGAGGCCGAGGAGGAGGAG
GAAGGGCTCCGACGGCTTCCAAGGCTCCCTGTACCGGTGCCTCCTCTACT
GCCACTGGTAAGATTGCTATTGCCCCTCCTGCTGCTGCTGCTGCTGCTGC
TGCCGCTGTTTCCGCTGTTGCCGCTGTTGCCGCTGCCGTCGGTATGGGCG
GATGATGGTGGCATCGGTGCGGGTGC
back to top

protein sequence of jgi.p|Nanoce1779_2|611967

>mRNA_10326-protein ID=mRNA_10326-protein|Name=jgi.p|Nanoce1779_2|611967|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MGEAPFHPPLLLPLPLALLLGARHPCPETALSPSPSTGPLPHPSLPPPPL
SSPPGAAFRFLEPESAGWGGGREEGGGRGAGEAEEEEEGLRRLPRLPVPV
PPLLPLV
back to top

mRNA from alignment at scaffold_60:86585..87060-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10326 ID=mRNA_10326|Name=jgi.p|Nanoce1779_2|611967|organism=Nannochloropsis oceanica|type=mRNA|length=476bp|location=Sequence derived from alignment at scaffold_60:86585..87060- (Nannochloropsis oceanica)
TGCTGCTGCTGAAGCTACCTATCCCCCCATCGTGCTGGGATGGGAGAGGC
GCCCTTCCATCCTCCCCTCCTCCTCCCCCTCCCCCTCGCCCTACTCCTCG
GTGCGCGCCATCCCTGTCCTGAGACCGCTCTCTCTCCTTCTCCCTCGACC
GGCCCCTTACCCCATCCCTCTCTCCCCCCCCCCCCTCTCTCATCCCCTCC
TGGTGCTGCCTTCCGCTTTCTCGAGCCCGAGTCTGCGGGCTGGGGGGGCG
GGAGGGAGGAAGGAGGGGGAAGGGGGGCAGGCGAGGCCGAGGAGGAGGAG
GAAGGGCTCCGACGGCTTCCAAGGCTCCCTGTACCGGTGCCTCCTCTACT
GCCACTGGTAAGATTGCTATTGCCCCTCCTGCTGCTGCTGCTGCTGCTGC
TGCCGCTGTTTCCGCTGTTGCCGCTGTTGCCGCTGCCGTCGGTATGGGCG
GATGATGGTGGCATCGGTGCGGGTGC
back to top

Coding sequence (CDS) from alignment at scaffold_60:86585..87060-

>mRNA_10326 ID=mRNA_10326|Name=jgi.p|Nanoce1779_2|611967|organism=Nannochloropsis oceanica|type=CDS|length=322bp|location=Sequence derived from alignment at scaffold_60:86585..87060- (Nannochloropsis oceanica)
ATGGGAGAGGCGCCCTTCCATCCTCCCCTCCTCCTCCCCCTCCCCCTCGC
CCTACTCCTCGGTGCGCGCCATCCCTGTCCTGAGACCGCTCTCTCTCCTT
CTCCCTCGACCGGCCCCTTACCCCATCCCTCTCTCCCCCCCCCCCCTCTC
TCATCCCCTCCTGGTGCTGCCTTCCGCTTTCTCGAGCCCGAGTCTGCGGG
CTGGGGGGGCGGGAGGGAGGAAGGAGGGGGAAGGGGGGCAGGCGAGGCCG
AGGAGGAGGAGGAAGGGCTCCGACGGCTTCCAAGGCTCCCTGTACCGGTG
CCTCCTCTACTGCCACTGGTAA
back to top
Synonyms
Publications