jgi.p|Nanoce1779_2|374470, mRNA_10324 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|374470
Unique NamemRNA_10324
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length754
Alignment locationscaffold_60:75345..76499 -

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Properties
Property NameValue
TranscriptId374556
TrackFilteredModels2
ProteinId374470
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:75345..76499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|374470gene_10324Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|374470mRNA_10324-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10324CDS_10324Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10324 ID=mRNA_10324|Name=jgi.p|Nanoce1779_2|374470|organism=Nannochloropsis oceanica|type=mRNA|length=754bp
AAAGCGTGGTACTCTTTGCCCTCGCTCACCACAGGGCGTTCAAAGAGCAC
TCCGCCAAACCATGAGCGAAGACACGCGCAACGGGAAAATCGGCATTGCC
GCCGCCACCCCCGGGAGCGCCACAAAGAGGGCCGGCAACGGGGATGAGAA
CGTATTTGGCACGCTATTTGACCTGGCCAATGCCACGGCGGCGAAGTTGG
AAGCCTTGTGGGAAGAAGTGGGCTGCTCGGCGGAGGACCGGAAGGAGCAC
TTGCAAGGCCTCGTGGTTGACTTTGAGCGTCTCTGCCAGGAGAAGGTGCG
GGAGGAGGAGAGTGTCCGCGACCAGTTTCATACAAGCATTGCCCAACTGC
AGCAGGAGGTGGGGGAGCTGACGGCGCGCTTGGGGAGATCGGGAGGCGCG
CCTTCGCCTACCCGGGCGTCGCTGAGCGGCAACGGCAGCACCAACCTCAC
GGACCGCCTGGCCGACTTGGAGGAGACGGTGGAGGATCTTCGGGTCCACA
AGGAGGAACGACTGCAGAGCCTGCGGGCGACGAGGGAGAAGTAAGGACGG
GGGGAGGGAGGGAGGGAGGGAGGGAGTAGGGGATAGGGGCCATTACTCGC
AAGAAGAGAGTTGACCAGGGAATATACGACGCGAAATAAATATTGATTCG
ACATCATCAACCGGCCACTATCCAGGGCGGAGGGGTTGTTGAGCAAGATG
GGCGAGCCGTTGGAGCCGCTCTTCCAGGATGAGAAGGACCTGAGCGAGGC
CAAG
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protein sequence of jgi.p|Nanoce1779_2|374470

>mRNA_10324-protein ID=mRNA_10324-protein|Name=jgi.p|Nanoce1779_2|374470|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MSEDTRNGKIGIAAATPGSATKRAGNGDENVFGTLFDLANATAAKLEALW
EEVGCSAEDRKEHLQGLVVDFERLCQEKVREEESVRDQFHTSIAQLQQEV
GELTARLGRSGGAPSPTRASLSGNGSTNLTDRLADLEETVEDLRVHKEER
LQSLRATREK*
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mRNA from alignment at scaffold_60:75345..76499-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10324 ID=mRNA_10324|Name=jgi.p|Nanoce1779_2|374470|organism=Nannochloropsis oceanica|type=mRNA|length=1155bp|location=Sequence derived from alignment at scaffold_60:75345..76499- (Nannochloropsis oceanica)
AAAGCGTGGTACTCTTTGCCCTCGCTCACCACAGGGCGTTCAAAGAGCAC
TCCGCCAAACCATGAGCGAAGACACGCGCAACGGGAAAATCGGCATTGCC
GCCGCCACCCCCGGGAGCGCCACAAAGAGGGCCGGCAACGGGGATGAGAA
CGTATTTGGCACGCTATTTGACCTGGCCAATGCCACGGCGGCGAAGTTGG
AAGCCTTGTGGGAAGAAGTGGGCTGCTCGGCGGAGGACCGGAAGGAGCAC
TTGCAAGGTGGGCGGGGAGGGAGGGAGCGGAGTGAGGGGAGGGAGATGAA
AGAAACGAAGAGAGTGAGGCAGGGGTAGTAAGGGCTGGGTTACAAAATGA
CATGTGCTCCTTGCGTGATTGGTTGAGACGCCAATGCTCTATTTACGATT
CCTCTCCTTCCCTTCCTCAATTCCTCCCTCTCTCCCTCCTCCCGCGTCGC
GCCCCATCAGGCCTCGTGGTTGACTTTGAGCGTCTCTGCCAGGAGAAGGT
GCGGGAGGAGGAGAGTGTCCGCGACCAGTTTCATACAAGCATTGCCCAAC
TGCAGCAGGAGGTGGGGGAGCTGACGGCGCGCTTGGGGGTGAGTGATGGG
AAGGCGGAAGGATGGAGGGAGGAGGGGAAGAAAGAAATGGAGGGGAGCGA
AAGGGGACATCGAAGCATGCGTCAAGAAGTCGTTAATATCAACAGTGAAC
TTTCGCTCACACCCCTTGCGTCCCTTTTTTATTGACTTCTCCTCTTCTAT
CTCTCCTCCCTCCCCCCTTCCCCCGCCCTCTCTCAGAGATCGGGAGGCGC
GCCTTCGCCTACCCGGGCGTCGCTGAGCGGCAACGGCAGCACCAACCTCA
CGGACCGCCTGGCCGACTTGGAGGAGACGGTGGAGGATCTTCGGGTCCAC
AAGGAGGAACGACTGCAGAGCCTGCGGGCGACGAGGGAGAAGTAAGGACG
GGGGGAGGGAGGGAGGGAGGGAGGGAGTAGGGGATAGGGGCCATTACTCG
CAAGAAGAGAGTTGACCAGGGAATATACGACGCGAAATAAATATTGATTC
GACATCATCAACCGGCCACTATCCAGGGCGGAGGGGTTGTTGAGCAAGAT
GGGCGAGCCGTTGGAGCCGCTCTTCCAGGATGAGAAGGACCTGAGCGAGG
CCAAG
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Coding sequence (CDS) from alignment at scaffold_60:75345..76499-

>mRNA_10324 ID=mRNA_10324|Name=jgi.p|Nanoce1779_2|374470|organism=Nannochloropsis oceanica|type=CDS|length=1449bp|location=Sequence derived from alignment at scaffold_60:75345..76499- (Nannochloropsis oceanica)
AGATCGGGAGGCGCGCCTTCGCCTACCCGGGCGTCGCTGAGCGGCAACGG
CAGCACCAACCTCACGGACCGCCTGGCCGACTTGGAGGAGACGGTGGAGG
ATCTTCGGGTCCACAAGGAGGAACGACTGCAGAGCCTGCGGGCGACGAGG
GAGAAGTAAGCCTCGTGGTTGACTTTGAGCGTCTCTGCCAGGAGAAGGTG
CGGGAGGAGGAGAGTGTCCGCGACCAGTTTCATACAAGCATTGCCCAACT
GCAGCAGGAGGTGGGGGAGCTGACGGCGCGCTTGGGGATGAGCGAAGACA
CGCGCAACGGGAAAATCGGCATTGCCGCCGCCACCCCCGGGAGCGCCACA
AAGAGGGCCGGCAACGGGGATGAGAACGTATTTGGCACGCTATTTGACCT
GGCCAATGCCACGGCGGCGAAGTTGGAAGCCTTGTGGGAAGAAGTGGGCT
GCTCGGCGGAGGACCGGAAGGAGCACTTGCAAGAGATCGGGAGGCGCGCC
TTCGCCTACCCGGGCGTCGCTGAGCGGCAACGGCAGCACCAACCTCACGG
ACCGCCTGGCCGACTTGGAGGAGACGGTGGAGGATCTTCGGGTCCACAAG
GAGGAACGACTGCAGAGCCTGCGGGCGACGAGGGAGAAGTAAGCCTCGTG
GTTGACTTTGAGCGTCTCTGCCAGGAGAAGGTGCGGGAGGAGGAGAGTGT
CCGCGACCAGTTTCATACAAGCATTGCCCAACTGCAGCAGGAGGTGGGGG
AGCTGACGGCGCGCTTGGGGATGAGCGAAGACACGCGCAACGGGAAAATC
GGCATTGCCGCCGCCACCCCCGGGAGCGCCACAAAGAGGGCCGGCAACGG
GGATGAGAACGTATTTGGCACGCTATTTGACCTGGCCAATGCCACGGCGG
CGAAGTTGGAAGCCTTGTGGGAAGAAGTGGGCTGCTCGGCGGAGGACCGG
AAGGAGCACTTGCAAGAGATCGGGAGGCGCGCCTTCGCCTACCCGGGCGT
CGCTGAGCGGCAACGGCAGCACCAACCTCACGGACCGCCTGGCCGACTTG
GAGGAGACGGTGGAGGATCTTCGGGTCCACAAGGAGGAACGACTGCAGAG
CCTGCGGGCGACGAGGGAGAAGTAAGCCTCGTGGTTGACTTTGAGCGTCT
CTGCCAGGAGAAGGTGCGGGAGGAGGAGAGTGTCCGCGACCAGTTTCATA
CAAGCATTGCCCAACTGCAGCAGGAGGTGGGGGAGCTGACGGCGCGCTTG
GGGATGAGCGAAGACACGCGCAACGGGAAAATCGGCATTGCCGCCGCCAC
CCCCGGGAGCGCCACAAAGAGGGCCGGCAACGGGGATGAGAACGTATTTG
GCACGCTATTTGACCTGGCCAATGCCACGGCGGCGAAGTTGGAAGCCTTG
TGGGAAGAAGTGGGCTGCTCGGCGGAGGACCGGAAGGAGCACTTGCAAG
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Synonyms
Publications