jgi.p|Nanoce1779_2|611953, mRNA_10321 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611953
Unique NamemRNA_10321
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length532
Alignment locationscaffold_60:70058..71058 +

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Properties
Property NameValue
TranscriptId612039
TrackFilteredModels2
ProteinId611953
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:70058..71058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611953gene_10321Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611953mRNA_10321-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10321CDS_10321Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10321 ID=mRNA_10321|Name=jgi.p|Nanoce1779_2|611953|organism=Nannochloropsis oceanica|type=mRNA|length=532bp
AACCACAGACACAGCACCATGGGCAAGGATACGCGAGTCACCTACCAACG
GCGCCATGCCTATGCCACCCGGTCCAATGAGCGTGTCATCGTCAAGACCC
CAGGCGGCCGTTTGACTCTCCATCAGATCAAGAAGAAGACCCGTGGCCCC
CACTGCGGCGACTGCAAGGTCAGCCTGCCCGGCATCAAGCACCTCAAGAC
CAAGGTAATGAACGATATGTAGTGTTGTTCGCTGGACGCAGCCCCTTTTC
GTCCACCTTCTATGTGCCTGGATCTATGGACCCTACTGCAGTGTTGTCCA
CCTAGTGGCCTCCGATGTTCCCTTAATCCCCCTGCCAGCATCGACTCTTG
ATCTCTTCTCACCTTAGCCTGCTTCCCTCTCTCCCTCCCTTCCTTCCTTC
ATTTTCCCCTTCCAAACACCACAATAGGAGTACAAGAACGTGCACAAGCG
AGAGCGTACCGTGTCCCGTGCCTATGGCGGATCCCGATGCGGAAGCTGCG
TCCGAAGCCGCATCGTCCGCGCCTTTCTAATC
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protein sequence of jgi.p|Nanoce1779_2|611953

>mRNA_10321-protein ID=mRNA_10321-protein|Name=jgi.p|Nanoce1779_2|611953|organism=Nannochloropsis oceanica|type=polypeptide|length=68bp
MGKDTRVTYQRRHAYATRSNERVIVKTPGGRLTLHQIKKKTRGPHCGDCK
VSLPGIKHLKTKVMNDM*
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mRNA from alignment at scaffold_60:70058..71058+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10321 ID=mRNA_10321|Name=jgi.p|Nanoce1779_2|611953|organism=Nannochloropsis oceanica|type=mRNA|length=1001bp|location=Sequence derived from alignment at scaffold_60:70058..71058+ (Nannochloropsis oceanica)
AACCACAGACACAGCACCATGGGCAAGGATACGCGAGTCACCTACCAACG
GCGCCATGCCTATGCCACCCGGTCCAATGAGCGTGTCATCGTCAAGACCC
CAGGTCAGTCCTCCCCTCAAATGATCATGATGCTGCCCTGTCCTTCCCTT
CCTCCTCCGCGGCCTTACACAATCTCTGGATCACCCCTAACCCCGTCTAT
TCCATATACCAGGCGGCCGTTTGACTCTCCATCAGATCAAGAAGAAGACC
CGTGGCCCCCACTGCGGCGACTGCAAGGTCAGCCTGCCCGGCATCAAGCA
CCTCAAGACCAAGGTAATGAACGATATGTAGTGTTGTTCGCTGGACGCAG
CCCCTTTTCGTCCACCTTCTATGTGCCTGGATCTATGGACCCTACTGCAG
TGTTGTCCACCTAGTGGCCTCCGATGTTCCCTTAATCCCCCTGCCAGCAT
CGACTCTTGATCTCTTCTCACCTTAGCCTGCTTCCCTCTCTCCCTCCCTT
CCTTCCTTCATTTTCCCCTTCCAAACACCACAATAGGAGTACAAGAACGT
GCACAAGCGAGAGCGTACCGTGTCCCGTGCCTATGGCGGATCCCGATGCG
GAAGCTGCGTCCGAAGCCGGTGGGTGATGCGGGAGGGAGGGAGGGAGGGA
GAGGAGGACGGCACGTTGAAGAGACGCGACGAGTAGAATGATGAATGAGA
ATCCCTTACTCTGCTAGCGCGAGACGCGACCCTTTCGGGAAACGGTGAGC
GAGGCAACCATAACAAATCATGAAATTAGTCTTTCGTTCTGACACTCAAG
AAGAAGCGACGCGCAGAGGATGAGGAGTAGGAGGATGAGTAGGAGGATCA
GAAGAAGAAGAAGTAGTAGTAGAAGGAGAAGAGCGAATAGTGAGAGGAAT
TTGATGCGAATCAATACACTCATCCTCTTTCCATTATCTCTTTTTCTCCA
AACGCACGACGGAACTTCCCCACACACAGCATCGTCCGCGCCTTTCTAAT
C
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Coding sequence (CDS) from alignment at scaffold_60:70058..71058+

>mRNA_10321 ID=mRNA_10321|Name=jgi.p|Nanoce1779_2|611953|organism=Nannochloropsis oceanica|type=CDS|length=408bp|location=Sequence derived from alignment at scaffold_60:70058..71058+ (Nannochloropsis oceanica)
ATGGGCAAGGATACGCGAGTCACCTACCAACGGCGCCATGCCTATGCCAC
CCGGTCCAATGAGCGTGTCATCGTCAAGACCCCAGGCGGCCGTTTGACTC
TCCATCAGATCAAGAAGAAGACCCGTGGCCCCCACTGCGGCGACTGCAAG
GTCAGCCTGCCCGGCATCAAGCACCTCAAGACCAAGGTAATGAACGATAT
GTAGATGGGCAAGGATACGCGAGTCACCTACCAACGGCGCCATGCCTATG
CCACCCGGTCCAATGAGCGTGTCATCGTCAAGACCCCAGGCGGCCGTTTG
ACTCTCCATCAGATCAAGAAGAAGACCCGTGGCCCCCACTGCGGCGACTG
CAAGGTCAGCCTGCCCGGCATCAAGCACCTCAAGACCAAGGTAATGAACG
ATATGTAG
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Synonyms
Publications