jgi.p|Nanoce1779_2|611951, mRNA_10320 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611951
Unique NamemRNA_10320
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length560
Alignment locationscaffold_60:67949..68508 +

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Properties
Property NameValue
TranscriptId612037
TrackFilteredModels2
ProteinId611951
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:67949..68508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611951gene_10320Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611951mRNA_10320-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10320CDS_10320Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10320 ID=mRNA_10320|Name=jgi.p|Nanoce1779_2|611951|organism=Nannochloropsis oceanica|type=mRNA|length=560bp
TCTCGTCCTTCTCTTCTTTGTTGCCTCCGTGTTTGCAGAGCCACTTCTGT
TCTCGTGTGCGCCCCAGCGTCAGCTGCTGTTGCTGCTGCTCTTCCCCTTT
CTCTTGCTGCTGCCGATGATACTGTTGTTGTTGTTGCTGCTGCTCCTGCC
CATGGTGCCACTGCTGTGGTGGATGCTGAAATCGCCTTTTGCGGGGCGAA
GTTGTAGTAGCAGCAGTAGCAGAAGCGAGCAGCTCCTCCATCTTCTTCTC
TTGCCTCTCCTCCTCCAATTTCCCTTCGCCTTGTTCCTCCGTTTCCTTTT
CCCTCTTCTTCTTTTTCTGCTTTTCTTCTTTCTTTTCCTTCTCTTCTCTC
GCTTCTTCTCTATCTCGTCCTCCTCCTCCACCTACTGACAACCCCACCAA
TTGACTCTCCTCCTTCGCCCCTTGCTCCCTACCTTCCTCAATGTCCCCCC
CTTCATACCCTTTGCCCCGATAAACCACAGGATGCAACCATGCCTCTGTT
TCCTCCTCCCTTTCTCCCTTTCTCTCCCCCTCATGGGGAAGTGGGATCTC
AAGCTCCCGG
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protein sequence of jgi.p|Nanoce1779_2|611951

>mRNA_10320-protein ID=mRNA_10320-protein|Name=jgi.p|Nanoce1779_2|611951|organism=Nannochloropsis oceanica|type=polypeptide|length=91bp
MILLLLLLLLLPMVPLLWWMLKSPFAGRSCSSSSSRSEQLLHLLLLPLLL
QFPFALFLRFLFPLLLFLLFFFLFLLFSRFFSISSSSSTY*
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mRNA from alignment at scaffold_60:67949..68508+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10320 ID=mRNA_10320|Name=jgi.p|Nanoce1779_2|611951|organism=Nannochloropsis oceanica|type=mRNA|length=560bp|location=Sequence derived from alignment at scaffold_60:67949..68508+ (Nannochloropsis oceanica)
TCTCGTCCTTCTCTTCTTTGTTGCCTCCGTGTTTGCAGAGCCACTTCTGT
TCTCGTGTGCGCCCCAGCGTCAGCTGCTGTTGCTGCTGCTCTTCCCCTTT
CTCTTGCTGCTGCCGATGATACTGTTGTTGTTGTTGCTGCTGCTCCTGCC
CATGGTGCCACTGCTGTGGTGGATGCTGAAATCGCCTTTTGCGGGGCGAA
GTTGTAGTAGCAGCAGTAGCAGAAGCGAGCAGCTCCTCCATCTTCTTCTC
TTGCCTCTCCTCCTCCAATTTCCCTTCGCCTTGTTCCTCCGTTTCCTTTT
CCCTCTTCTTCTTTTTCTGCTTTTCTTCTTTCTTTTCCTTCTCTTCTCTC
GCTTCTTCTCTATCTCGTCCTCCTCCTCCACCTACTGACAACCCCACCAA
TTGACTCTCCTCCTTCGCCCCTTGCTCCCTACCTTCCTCAATGTCCCCCC
CTTCATACCCTTTGCCCCGATAAACCACAGGATGCAACCATGCCTCTGTT
TCCTCCTCCCTTTCTCCCTTTCTCTCCCCCTCATGGGGAAGTGGGATCTC
AAGCTCCCGG
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Coding sequence (CDS) from alignment at scaffold_60:67949..68508+

>mRNA_10320 ID=mRNA_10320|Name=jgi.p|Nanoce1779_2|611951|organism=Nannochloropsis oceanica|type=CDS|length=273bp|location=Sequence derived from alignment at scaffold_60:67949..68508+ (Nannochloropsis oceanica)
ATGATACTGTTGTTGTTGTTGCTGCTGCTCCTGCCCATGGTGCCACTGCT
GTGGTGGATGCTGAAATCGCCTTTTGCGGGGCGAAGTTGTAGTAGCAGCA
GTAGCAGAAGCGAGCAGCTCCTCCATCTTCTTCTCTTGCCTCTCCTCCTC
CAATTTCCCTTCGCCTTGTTCCTCCGTTTCCTTTTCCCTCTTCTTCTTTT
TCTGCTTTTCTTCTTTCTTTTCCTTCTCTTCTCTCGCTTCTTCTCTATCT
CGTCCTCCTCCTCCACCTACTGA
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Synonyms
Publications