jgi.p|Nanoce1779_2|611950, mRNA_10319 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611950
Unique NamemRNA_10319
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length462
Alignment locationscaffold_60:66442..67359 +

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Properties
Property NameValue
TranscriptId612036
TrackFilteredModels2
ProteinId611950
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:66442..67359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611950gene_10319Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611950mRNA_10319-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10319CDS_10319Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10319 ID=mRNA_10319|Name=jgi.p|Nanoce1779_2|611950|organism=Nannochloropsis oceanica|type=mRNA|length=462bp
ACAGACAGCCATGTCTAGCACCGGTACCATCCGTGGCCTGAACAAGGGGT
TCCCGGTCGAGAAGCTCGAGGTGCCCAAGCGGCCAGCGGCCCGCAAGGGG
ACCCTGGTCAAGAAGGTCAAGCTCGTCCGTGAGGTTATTCGGGACGTAGT
GGGCCTCATGCCCTACGAGAAGCGCATCCTTGATGTCATCAAAAGCGGTG
GCTCTGGTGCTGAGAAGAAGGTGTATAAGTTCGCCAAGCGGCGGTTGGGT
ACCCACCGTCGCGCCCTGAAGAAGCGTGAGGAAATCAAGGACTACTACGG
CAAGCTCCGTGCCCGTCAGGCGGCCCACTAAATTTACAGCTTGCACTAGG
CATACCTACATGGACACCCGCTTGGTAGATAGAGGATGGAGAGAAGGTCC
TTTTTTACGTCTCTCCCCGGCATTTTGGTGCCATGAGAAGTGGAGGAAGG
GGGAGAGGGGGT
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protein sequence of jgi.p|Nanoce1779_2|611950

>mRNA_10319-protein ID=mRNA_10319-protein|Name=jgi.p|Nanoce1779_2|611950|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MSSTGTIRGLNKGFPVEKLEVPKRPAARKGTLVKKVKLVREVIRDVVGLM
PYEKRILDVIKSGGSGAEKKVYKFAKRRLGTHRRALKKREEIKDYYGKLR
ARQAAH*
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mRNA from alignment at scaffold_60:66442..67359+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10319 ID=mRNA_10319|Name=jgi.p|Nanoce1779_2|611950|organism=Nannochloropsis oceanica|type=mRNA|length=918bp|location=Sequence derived from alignment at scaffold_60:66442..67359+ (Nannochloropsis oceanica)
ACAGACAGCCATGTCTAGCACCGGTACCATCCGTGGCCTGAACAAGGGGT
TCCCGGTCGAGAAGCTCGAGGTGCCCAAGCGGCCAGCGGCCCGCAAGGGG
GTAAGTCTTGATGAGAAAGAGAGAAAGGAGGGAGGCGTGGAGGAGTGTAA
GTGCATGCAGGGCACTGCGATCTCCAGCATCATCGTGTCTGAGTCTGGCA
CATGACAGAGAAGGGGATAGAGCGGTAGAAACAGGCTGTGTAGTGTTTCT
CTAAGAGCCCCAGCGCTTATTATGTCAGCCTATCAAGCACTCATCTATCT
GCCCTTTTCTGCCTCGCCCCTCCTTTCCTGTTATTCCCGCAGACCCTGGT
CAAGAAGGTCAAGCTCGTCCGTGAGGTTATTCGGGACGTAGTGGGCCTCA
TGCCCTACGAGAAGCGCATCCTTGATGTCATCAAAAGCGGTGGCTCTGGT
GCTGAGAAGAAGGTACGTGTAGGGTCAGTGGGGTATGTGACGATCACGGT
AAAAGGGCTTACTTGCTCCTCCTTCGACAGCTACCATGACATGCGGACAT
TGTTCCCTTTTTCGCAGGCACTCTCGCATTTCCCCCTTCTTCCGGCCGTA
CCCCGTATAAAACCCCCTCTCAGCCCCTCACATCCTCCCCTCCCTTCTTC
CCACCCGTCCCCCTCGTCTTCTCCAGGTGTATAAGTTCGCCAAGCGGCGG
TTGGGTACCCACCGTCGCGCCCTGAAGAAGCGTGAGGAAATCAAGGACTA
CTACGGCAAGCTCCGTGCCCGTCAGGCGGCCCACTAAATTTACAGCTTGC
ACTAGGCATACCTACATGGACACCCGCTTGGTAGATAGAGGATGGAGAGA
AGGTCCTTTTTTACGTCTCTCCCCGGCATTTTGGTGCCATGAGAAGTGGA
GGAAGGGGGAGAGGGGGT
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Coding sequence (CDS) from alignment at scaffold_60:66442..67359+

>mRNA_10319 ID=mRNA_10319|Name=jgi.p|Nanoce1779_2|611950|organism=Nannochloropsis oceanica|type=CDS|length=963bp|location=Sequence derived from alignment at scaffold_60:66442..67359+ (Nannochloropsis oceanica)
ATGTCTAGCACCGGTACCATCCGTGGCCTGAACAAGGGGTTCCCGGTCGA
GAAGCTCGAGGTGCCCAAGCGGCCAGCGGCCCGCAAGGGGACCCTGGTCA
AGAAGGTCAAGCTCGTCCGTGAGGTTATTCGGGACGTAGTGGGCCTCATG
CCCTACGAGAAGCGCATCCTTGATGTCATCAAAAGCGGTGGCTCTGGTGC
TGAGAAGAAGGTGTATAAGTTCGCCAAGCGGCGGTTGGGTACCCACCGTC
GCGCCCTGAAGAAGCGTGAGGAAATCAAGGACTACTACGGCAAGCTCCGT
GCCCGTCAGGCGGCCCACTAAATGTCTAGCACCGGTACCATCCGTGGCCT
GAACAAGGGGTTCCCGGTCGAGAAGCTCGAGGTGCCCAAGCGGCCAGCGG
CCCGCAAGGGGACCCTGGTCAAGAAGGTCAAGCTCGTCCGTGAGGTTATT
CGGGACGTAGTGGGCCTCATGCCCTACGAGAAGCGCATCCTTGATGTCAT
CAAAAGCGGTGGCTCTGGTGCTGAGAAGAAGGTGTATAAGTTCGCCAAGC
GGCGGTTGGGTACCCACCGTCGCGCCCTGAAGAAGCGTGAGGAAATCAAG
GACTACTACGGCAAGCTCCGTGCCCGTCAGGCGGCCCACTAAATGTCTAG
CACCGGTACCATCCGTGGCCTGAACAAGGGGTTCCCGGTCGAGAAGCTCG
AGGTGCCCAAGCGGCCAGCGGCCCGCAAGGGGACCCTGGTCAAGAAGGTC
AAGCTCGTCCGTGAGGTTATTCGGGACGTAGTGGGCCTCATGCCCTACGA
GAAGCGCATCCTTGATGTCATCAAAAGCGGTGGCTCTGGTGCTGAGAAGA
AGGTGTATAAGTTCGCCAAGCGGCGGTTGGGTACCCACCGTCGCGCCCTG
AAGAAGCGTGAGGAAATCAAGGACTACTACGGCAAGCTCCGTGCCCGTCA
GGCGGCCCACTAA
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Synonyms
Publications