jgi.p|Nanoce1779_2|611942, mRNA_10317 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611942
Unique NamemRNA_10317
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1148
Alignment locationscaffold_60:60860..62007 -

Link to JBrowse

Properties
Property NameValue
TranscriptId612028
TrackFilteredModels2
ProteinId611942
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:60860..62007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611942gene_10317Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611942mRNA_10317-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10317CDS_10317Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10317 ID=mRNA_10317|Name=jgi.p|Nanoce1779_2|611942|organism=Nannochloropsis oceanica|type=mRNA|length=1148bp
GCAGATACAACACCGCGTTTTGCCACCGATCTAGCACCATTATTATTTTA
CGAATGGTCGCGGGGCTTGACAACACCGCAATGTGGCCGTCTTGGAGAGG
AGGAGAAGGAGGAGGAGGGGAGGCAAGTACGCAGGCAGATGAAACCACCG
TCCCAGACGTTTCGCATCCTTCGCCGCTTTCAGCACCCACAACAAGCAGA
CGCACTTCAGCCTGCTCGTGCGCAGCGCTGTGTGCCTTGGTTGCTAATTG
CACAACACGGCCCCATGAACCATTTTCCTGCAATATTTGGCATGTATTTG
GCCGTAATAGTCCCGCGGTTTCTGGAACTTTATCTCCCACCCAACACCCA
CGATCGAGGCTGCCCATTTCCCTTCAAGCCATTCAACATAACGATAGGCG
CTTCATGCGTCCATCCACTGGGCACTATCCTACCCAGAGTAAGCATACAA
CAAAACTCTGGCGTTCACTTTTAACCTTCACATCCATATTTATCCGGGGA
TTCGGCCGTAAATGTCCCCCGCGGCAACGCTCTTTGTGCACCCACGGTGT
GCGAGCGGATCGAGAGAGGTGTCAGGGACGAGACAGCAACACACGAAGCA
CCACCAAAGACGCTAGGCTTCTACACAGGCGACACTGCAAGGACACAAAT
TACCATACGAACAGGATACCTTTGTCTTTCCCCATGGATCCAGCAGCGCG
CCAGGCAGACAAGCCCCTCCTCGGCATTGTGGGCACAGCATCAGCTCGGC
CTGGCGTCCTTGCCCTGTTGTGTACAACCCCGCTGGTGGCACGACACACA
CGAGACACTTATCAGCATAATACAATCCATTTTTTATAGTCATGCGGGTG
TCTTGTCTTATCTAGTGGGGGGACGGAGACGTCTTTGCTGTCTGGCCCAT
GAAGTGAAGCGGCCCATATACCTCGTGTAGGTGTGGACGTGCAACTCCAC
GCCACGCGCACGTGTAGCTCTGCTCTCTGCGGATCTCTGGGATGCGATTG
ACGCACGACCTTTCTTCTCCTTTCTCCGGTCTGACCCCCCTTCCCCTCTC
ACCCACGAACACCCGCACAGGCAGTCAGAGAGACCAGGCGTCGTCATCGT
CACCCTACCTCCTTTTTTTATTTTATTTTTTAAAATCAAATTTTGCTT
back to top

protein sequence of jgi.p|Nanoce1779_2|611942

>mRNA_10317-protein ID=mRNA_10317-protein|Name=jgi.p|Nanoce1779_2|611942|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MVAGLDNTAMWPSWRGGEGGGGEASTQADETTVPDVSHPSPLSAPTTSRR
TSACSCAALCALVANCTTRPHEPFSCNIWHVFGRNSPAVSGTLSPTQHPR
SRLPISLQAIQHNDRRFMRPSTGHYPTQSKHTTKLWRSLLTFTSIFIRGF
GRKCPPRQRSLCTHGVRADRERCQGRDSNTRSTTKDARLLHRRHCKDTNY
HTNRIPLSFPMDPAARQADKPLLGIVGTASARPGVLALLCTTPLVARHTR
DTYQHNTIHFL*
back to top

mRNA from alignment at scaffold_60:60860..62007-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10317 ID=mRNA_10317|Name=jgi.p|Nanoce1779_2|611942|organism=Nannochloropsis oceanica|type=mRNA|length=1148bp|location=Sequence derived from alignment at scaffold_60:60860..62007- (Nannochloropsis oceanica)
GCAGATACAACACCGCGTTTTGCCACCGATCTAGCACCATTATTATTTTA
CGAATGGTCGCGGGGCTTGACAACACCGCAATGTGGCCGTCTTGGAGAGG
AGGAGAAGGAGGAGGAGGGGAGGCAAGTACGCAGGCAGATGAAACCACCG
TCCCAGACGTTTCGCATCCTTCGCCGCTTTCAGCACCCACAACAAGCAGA
CGCACTTCAGCCTGCTCGTGCGCAGCGCTGTGTGCCTTGGTTGCTAATTG
CACAACACGGCCCCATGAACCATTTTCCTGCAATATTTGGCATGTATTTG
GCCGTAATAGTCCCGCGGTTTCTGGAACTTTATCTCCCACCCAACACCCA
CGATCGAGGCTGCCCATTTCCCTTCAAGCCATTCAACATAACGATAGGCG
CTTCATGCGTCCATCCACTGGGCACTATCCTACCCAGAGTAAGCATACAA
CAAAACTCTGGCGTTCACTTTTAACCTTCACATCCATATTTATCCGGGGA
TTCGGCCGTAAATGTCCCCCGCGGCAACGCTCTTTGTGCACCCACGGTGT
GCGAGCGGATCGAGAGAGGTGTCAGGGACGAGACAGCAACACACGAAGCA
CCACCAAAGACGCTAGGCTTCTACACAGGCGACACTGCAAGGACACAAAT
TACCATACGAACAGGATACCTTTGTCTTTCCCCATGGATCCAGCAGCGCG
CCAGGCAGACAAGCCCCTCCTCGGCATTGTGGGCACAGCATCAGCTCGGC
CTGGCGTCCTTGCCCTGTTGTGTACAACCCCGCTGGTGGCACGACACACA
CGAGACACTTATCAGCATAATACAATCCATTTTTTATAGTCATGCGGGTG
TCTTGTCTTATCTAGTGGGGGGACGGAGACGTCTTTGCTGTCTGGCCCAT
GAAGTGAAGCGGCCCATATACCTCGTGTAGGTGTGGACGTGCAACTCCAC
GCCACGCGCACGTGTAGCTCTGCTCTCTGCGGATCTCTGGGATGCGATTG
ACGCACGACCTTTCTTCTCCTTTCTCCGGTCTGACCCCCCTTCCCCTCTC
ACCCACGAACACCCGCACAGGCAGTCAGAGAGACCAGGCGTCGTCATCGT
CACCCTACCTCCTTTTTTTATTTTATTTTTTAAAATCAAATTTTGCTT
back to top

Coding sequence (CDS) from alignment at scaffold_60:60860..62007-

>mRNA_10317 ID=mRNA_10317|Name=jgi.p|Nanoce1779_2|611942|organism=Nannochloropsis oceanica|type=CDS|length=786bp|location=Sequence derived from alignment at scaffold_60:60860..62007- (Nannochloropsis oceanica)
ATGGTCGCGGGGCTTGACAACACCGCAATGTGGCCGTCTTGGAGAGGAGG
AGAAGGAGGAGGAGGGGAGGCAAGTACGCAGGCAGATGAAACCACCGTCC
CAGACGTTTCGCATCCTTCGCCGCTTTCAGCACCCACAACAAGCAGACGC
ACTTCAGCCTGCTCGTGCGCAGCGCTGTGTGCCTTGGTTGCTAATTGCAC
AACACGGCCCCATGAACCATTTTCCTGCAATATTTGGCATGTATTTGGCC
GTAATAGTCCCGCGGTTTCTGGAACTTTATCTCCCACCCAACACCCACGA
TCGAGGCTGCCCATTTCCCTTCAAGCCATTCAACATAACGATAGGCGCTT
CATGCGTCCATCCACTGGGCACTATCCTACCCAGAGTAAGCATACAACAA
AACTCTGGCGTTCACTTTTAACCTTCACATCCATATTTATCCGGGGATTC
GGCCGTAAATGTCCCCCGCGGCAACGCTCTTTGTGCACCCACGGTGTGCG
AGCGGATCGAGAGAGGTGTCAGGGACGAGACAGCAACACACGAAGCACCA
CCAAAGACGCTAGGCTTCTACACAGGCGACACTGCAAGGACACAAATTAC
CATACGAACAGGATACCTTTGTCTTTCCCCATGGATCCAGCAGCGCGCCA
GGCAGACAAGCCCCTCCTCGGCATTGTGGGCACAGCATCAGCTCGGCCTG
GCGTCCTTGCCCTGTTGTGTACAACCCCGCTGGTGGCACGACACACACGA
GACACTTATCAGCATAATACAATCCATTTTTTATAG
back to top
Synonyms
Publications