jgi.p|Nanoce1779_2|611939, mRNA_10314 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611939
Unique NamemRNA_10314
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length790
Alignment locationscaffold_60:56106..56895 +

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Properties
Property NameValue
TranscriptId612025
TrackFilteredModels2
ProteinId611939
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:56106..56895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611939gene_10314Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611939mRNA_10314-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10314CDS_10314Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10314 ID=mRNA_10314|Name=jgi.p|Nanoce1779_2|611939|organism=Nannochloropsis oceanica|type=mRNA|length=790bp
GCTGCTGCTGCTGCTGGATGAAAGGCGAGAGGACGGGGATTGTCGCCGTC
AAGAAGGAGGGAGACCGGCCTCTGATATTGAACGACTTGGGGGGTGGAGG
AGGAAATTACCGCGTAGGGAGGAGCGAAACTGCCGGTAAGCATGTCCCCT
GCGCCAGTTGGTGGGATGCAGGAAGAGGAAGTAGAAGAGATTGAGGGCTG
GGCAAGGAGGGCGGGCGGCTCCTGGGAGAAGGAGGACGGAGTGTGCAGGC
GGCTGTGATGGTGGTTATAATGGGTGTGGGTGCTACTCTCGCGGTGGTAG
TGCTGGGGGGAGGGAAGGACAGAGGAGGACTCTTGAAGCCACTGACTGAT
AGATCCACCACCGCCACTGATTCCGCTGCTGCCGGTGCTGCTTTCCGAGG
AAGGGGCGAAAAGGGGGTCCATTGGCCGGTCTTTCTTTGGCTGTGCCCGA
CGGCGGCGTTGTTGCTTGAGAGTGGTATAGTAGGCAAAGAGATCACCCGT
GACTTGTCCTAGACTGCAAGATCTCAAGAAATCGGTGACATAATGCGCCC
GCAGATACTTGAGGATGGACCGCAACTCCTCATACGAGGCCCCGCTCTGG
AGGCAGGCCTCGTTGATCTCACTGCGGTTGTTGTGGTTGGCAAACTGCCA
GCGATGAAGCAATGCACAGGAAATCCGATAGTACCCAAGAGATATCTCTT
CGCTCGTCGTCATGATGCCAGAGAGAGGCCGCAGTAAATGGGCGATTGGA
GTAAAAGGGACACGGTGCCGGTGGGGAGTTCGGACCCTGT
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protein sequence of jgi.p|Nanoce1779_2|611939

>mRNA_10314-protein ID=mRNA_10314-protein|Name=jgi.p|Nanoce1779_2|611939|organism=Nannochloropsis oceanica|type=polypeptide|length=85bp
MVVIMGVGATLAVVVLGGGKDRGGLLKPLTDRSTTATDSAAAGAAFRGRG
EKGVHWPVFLWLCPTAALLLESGIVGKEITRDLS*
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mRNA from alignment at scaffold_60:56106..56895+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10314 ID=mRNA_10314|Name=jgi.p|Nanoce1779_2|611939|organism=Nannochloropsis oceanica|type=mRNA|length=790bp|location=Sequence derived from alignment at scaffold_60:56106..56895+ (Nannochloropsis oceanica)
GCTGCTGCTGCTGCTGGATGAAAGGCGAGAGGACGGGGATTGTCGCCGTC
AAGAAGGAGGGAGACCGGCCTCTGATATTGAACGACTTGGGGGGTGGAGG
AGGAAATTACCGCGTAGGGAGGAGCGAAACTGCCGGTAAGCATGTCCCCT
GCGCCAGTTGGTGGGATGCAGGAAGAGGAAGTAGAAGAGATTGAGGGCTG
GGCAAGGAGGGCGGGCGGCTCCTGGGAGAAGGAGGACGGAGTGTGCAGGC
GGCTGTGATGGTGGTTATAATGGGTGTGGGTGCTACTCTCGCGGTGGTAG
TGCTGGGGGGAGGGAAGGACAGAGGAGGACTCTTGAAGCCACTGACTGAT
AGATCCACCACCGCCACTGATTCCGCTGCTGCCGGTGCTGCTTTCCGAGG
AAGGGGCGAAAAGGGGGTCCATTGGCCGGTCTTTCTTTGGCTGTGCCCGA
CGGCGGCGTTGTTGCTTGAGAGTGGTATAGTAGGCAAAGAGATCACCCGT
GACTTGTCCTAGACTGCAAGATCTCAAGAAATCGGTGACATAATGCGCCC
GCAGATACTTGAGGATGGACCGCAACTCCTCATACGAGGCCCCGCTCTGG
AGGCAGGCCTCGTTGATCTCACTGCGGTTGTTGTGGTTGGCAAACTGCCA
GCGATGAAGCAATGCACAGGAAATCCGATAGTACCCAAGAGATATCTCTT
CGCTCGTCGTCATGATGCCAGAGAGAGGCCGCAGTAAATGGGCGATTGGA
GTAAAAGGGACACGGTGCCGGTGGGGAGTTCGGACCCTGT
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Coding sequence (CDS) from alignment at scaffold_60:56106..56895+

>mRNA_10314 ID=mRNA_10314|Name=jgi.p|Nanoce1779_2|611939|organism=Nannochloropsis oceanica|type=CDS|length=255bp|location=Sequence derived from alignment at scaffold_60:56106..56895+ (Nannochloropsis oceanica)
ATGGTGGTTATAATGGGTGTGGGTGCTACTCTCGCGGTGGTAGTGCTGGG
GGGAGGGAAGGACAGAGGAGGACTCTTGAAGCCACTGACTGATAGATCCA
CCACCGCCACTGATTCCGCTGCTGCCGGTGCTGCTTTCCGAGGAAGGGGC
GAAAAGGGGGTCCATTGGCCGGTCTTTCTTTGGCTGTGCCCGACGGCGGC
GTTGTTGCTTGAGAGTGGTATAGTAGGCAAAGAGATCACCCGTGACTTGT
CCTAG
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Synonyms
Publications