|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 612013 |
| Track | FilteredModels2 |
| ProteinId | 611927 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:52692..55629 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10312 ID=mRNA_10312|Name=jgi.p|Nanoce1779_2|611927|organism=Nannochloropsis oceanica|type=mRNA|length=2665bp
GCAGCTAACCATTTTTTCAAAATTTCAAAAGGCCAGCTTGGTCTTGCACT
ATATTGCCAGGCCCTCTTTCTCAGCAGGCCATTTATAATTTCTCTGTTTG
ATTCAAGATTAGACGGTAGCTTTCTGTATATTTTGTAAAAGTGCTGGCTA
ATTACAGGAATGGTGCAGTGTGGGAGCTACAGACGCCTCCTCCACCCCCG
GCCTGGTAAACGGGCGCGTTTTAATGTAGTCGTGAACCGGCTACTCTCGC
AGCGCCAAAATTGAGGGCCGGGACCCACATCCTCGTTGAAAATGTCTTGC
AAAACTACCGAAGCAATTTTTCAGGTATCACCTCCCACCCGACGCGAGCG
CGGCCCAAGACACTCATCTTTAGGCCATCGAAGCGAAGAACAAAGAGCAA
TCCCTCTGCTTCCGAGACAAAGACTTACCACCAACCCAACAAGCGAGCAA
GAATGATCCTGGCTAAGTCCTTCGCGACCCAATCCCTGCGCCACCAGGCC
ACCGCCACCGCCGCCAAGAAGCTGGCCTCCGTGCAGCTCTTCTCGACGGT
TCGCGAGACCCTCCCCCATCACCCGTCCGATAAGGCCGCGATTGCTGAGG
TGGCGGCGACGACTGAAAAATGGCTCAAGACCGTCACTGGCCAGAAGCCG
ACCAGCCCCGCGGAGACGGCCGCCCTCTACGCTAACGACGGCGTTCTCTG
GGCCACCGTATCCACGGAGCTGCGCGTGAACCCCAAGGAGATCCGCGACT
ACTTTGACGTGTTTGCACGCCTGCCTAACCTGACCGTGACGGACTACAAG
CCCTTCATCCGCATGTATGGGGACATCGCCCTGAACGACGGCTACTACAC
CGTGCACTTCGACTCCCCCGACGGCAAGAAGGTCACGACCAAGGCCCGCT
ACGTCTTCGTCTACAAACGCAACGAGTCCTCGGGCGCTTGGGAGATCATT
GACCACCATTCCTCGGCCATGCCCGTGGCACCCGCGGGACTCAAGACAGC
CACCACCGTCGCACCTCCGACGTCCCATTAGAATAATGGTGAAAATTTAA
CAGTATGAGTTTGAAATGATGAAAGGTGGAGGGAAGTAGAGATTTAGAGA
GAAAGCGAGAAAGTGGGTGACGCAATGTGCACCTGCACAGCGCACTCTCC
TCTCCTTCTCTTTCCTTCACTTCCATATGTTCCTCAATTATAAAATAGTG
TGCCATATCCCAACTCGTGCACAAAAGGAGGAGCAACAGCTGTAGGAAAG
GGACATATACAGATATACAGATACACACTCGACACATCAATGTATTAATT
ATCAAGGCGGCTCATGTATAGACGTAGGAAAATGAATGAAAGTACTGGAA
GAGAGAGGAGGAAGATGATAAAGAGAGGAAAGAGGAGAAAAAGGGGAGAA
AGAAAGAAGAAAAGGTAGAAGAAGGAGGAACTTATCGATTCGCCTGCAAA
TACAATCATCCGCGAACTGAAGAAGGGAGTTTGGATAAAGACAGGATGTT
CCTGGTAGCTGAAAGGAGTATATGCAGTTCAACGATTTTTTTTTTCCTTT
GGAATTTCCTTCTTACTCGAGTTGGAGGATTTCCCTTTTTGGTTTTGGTC
CTTGCTTTACCCTCAGATAGAGGAGATCAAAAGGCTTTAATTAATTTAAT
AGTTCGGGTAGTTGATGTCGCCTTTCTTCAAATTATTCAAATTACTCGCT
CAAAGCGGAGGTGCTTACCGCATATGGGGAGGCCACGAGGCTACACAATC
TTCTAGGTTGAGTAGGCTTGGTCACTGCTCTTGAGCTTCTTTCTCTCCAC
ACTCGCTCCATTTTTAACATATATTTATAATCGTTCTTTTTCGCGCGTTC
CTTCTCGGCTTCCTTCCGTGCGTAGGCAGTCCAAATCACAAATCTTTTTT
TCTAGGATATTATCAAACAAGTAAGGAAAGCACACGATTACAACTTATCT
TAGCCTACCCTCCCTCGTCCAGGCTTTCTCTCGCTCTATGAGGATCATTA
TCATTCCACTTCTCAGGGATTCCCCCTTCAACCACCTTTTGTCCTTTTTG
CACACATCCTCCGCCCCTCCCCGTCATCCATTTCTCCTTCACCCCCTTAA
CCCTGCATCTTCAGGCCCAACAGCATGGATGCTGCCACTAAACGGTCGCA
CTTCATGTCCACATGGCACTGGCGCTTCTTCAAAGGCAAACGAGCGTCGT
CAATCTCTTGTTGACGCTTCTTCTTTTCCTCCTTCTCTTCTTCCTTCTCC
TCCTCTTCCCCGTCCTTCACCTCTTCCTTTTCTTCTTCTTCATCCTCCTC
TTCCTCTTCCCCCTCGTCTTCCTCCTCATCTTCCTCTTGTATGTACTGCC
GCCCGATATTACCGCTACTCGTGCTTGAGCCTTTGTCCTCGTCCGAGCCT
TCGGCAATTACAGGCCCGGGGGCAGGAGGGAACTTGACAAGATTACCATC
GGTGACGTTGCACATTTTGTTGCTGCCACCGCTATTAATGCTGTTCTTCA
TGCTGCTACTGGTGCCTGTAGTGTGGGCGCTGCTGAGGATATTAGCAACG
GTAGAGAGCCTCCCGCTGCAGCGTCTGCTGCTGCTACTGCTGCTGCAATT
CTTCTTGTTGCTGTTGTTTCTGCTGCTGCTGTTGCTGCTGCTGCTGCTGT
TGTTATTGTTGTTGT back to topprotein sequence of jgi.p|Nanoce1779_2|611927 >mRNA_10312-protein ID=mRNA_10312-protein|Name=jgi.p|Nanoce1779_2|611927|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MILAKSFATQSLRHQATATAAKKLASVQLFSTVRETLPHHPSDKAAIAEV
AATTEKWLKTVTGQKPTSPAETAALYANDGVLWATVSTELRVNPKEIRDY
FDVFARLPNLTVTDYKPFIRMYGDIALNDGYYTVHFDSPDGKKVTTKARY
VFVYKRNESSGAWEIIDHHSSAMPVAPAGLKTATTVAPPTSH* back to topmRNA from alignment at scaffold_60:52692..55629+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10312 ID=mRNA_10312|Name=jgi.p|Nanoce1779_2|611927|organism=Nannochloropsis oceanica|type=mRNA|length=2938bp|location=Sequence derived from alignment at scaffold_60:52692..55629+ (Nannochloropsis oceanica)
GCAGCTAACCATTTTTTCAAAATTTCAAAAGGCCAGCTTGGTCTTGCACT
ATATTGCCAGGCCCTCTTTCTCAGCAGGCCATTTATAATTTCTCTGTTTG
ATTCAAGATTAGACGGTAGCTTTCTGTATATTTTGTAAAAGTGCTGGCTA
ATTACAGGAATGGTGCAGTGTGGGAGCTACAGACGCCTCCTCCACCCCCG
GCCTGGTAAACGGGCGCGTTTTAATGTAGTCGTGAACCGGCTACTCTCGC
AGCGCCAAAATTGAGGGCCGGGACCCACATCCTCGTTGAAAATGTCTTGC
AAAACTACCGAAGCAATTTTTCAGGTATCACCTCCCACCCGACGCGAGCG
CGGCCCAAGACACTCATCTTTAGGCCATCGAAGCGAAGAACAAAGAGCAA
TCCCTCTGCTTCCGAGACAAAGGTGGGAATGAGCACTGTGGCCTGTAGCT
TCCCTACTATCTCGTCCTCGTCATATGCTGAGACCCCCAAAATGAGCTAG
ACATAGTCACTTAAGCTGTCCTGACAACCCACCATGACACAGCAGACTTA
CCACCAACCCAACAAGCGAGCAAGAATGATCCTGGCTAAGTCCTTCGCGA
CCCAATCCCTGCGCCACCAGGCCACCGCCACCGCCGCCAAGGTAAGTGCT
AGCAGCAGTCCCAGAACCTTGCAAGAGAGTAGACCAAAATTGTATACACC
CGCATCCCCAGCGCCTCCTCTTCTGCCTTGTGCATTTATGTAATCATGGT
CTCCCTCCCTTTCGGACACCCTATTCAACACCACCCCACAGAAGCTGGCC
TCCGTGCAGCTCTTCTCGACGGTTCGCGAGACCCTCCCCCATCACCCGTC
CGATAAGGCCGCGATTGCTGAGGTGGCGGCGACGACTGAAAAATGGCTCA
AGACCGTCACTGGCCAGAAGCCGACCAGCCCCGCGGAGACGGCCGCCCTC
TACGCTAACGACGGCGTTCTCTGGGCCACCGTATCCACGGAGCTGCGCGT
GAACCCCAAGGAGATCCGCGACTACTTTGACGTGTTTGCACGCCTGCCTA
ACCTGACCGTGACGGACTACAAGCCCTTCATCCGCATGTATGGGGACATC
GCCCTGAACGACGGCTACTACACCGTGCACTTCGACTCCCCCGACGGCAA
GAAGGTCACGACCAAGGCCCGCTACGTCTTCGTCTACAAACGCAACGAGT
CCTCGGGCGCTTGGGAGATCATTGACCACCATTCCTCGGCCATGCCCGTG
GCACCCGCGGGACTCAAGACAGCCACCACCGTCGCACCTCCGACGTCCCA
TTAGAATAATGGTGAAAATTTAACAGTATGAGTTTGAAATGATGAAAGGT
GGAGGGAAGTAGAGATTTAGAGAGAAAGCGAGAAAGTGGGTGACGCAATG
TGCACCTGCACAGCGCACTCTCCTCTCCTTCTCTTTCCTTCACTTCCATA
TGTTCCTCAATTATAAAATAGTGTGCCATATCCCAACTCGTGCACAAAAG
GAGGAGCAACAGCTGTAGGAAAGGGACATATACAGATATACAGATACACA
CTCGACACATCAATGTATTAATTATCAAGGCGGCTCATGTATAGACGTAG
GAAAATGAATGAAAGTACTGGAAGAGAGAGGAGGAAGATGATAAAGAGAG
GAAAGAGGAGAAAAAGGGGAGAAAGAAAGAAGAAAAGGTAGAAGAAGGAG
GAACTTATCGATTCGCCTGCAAATACAATCATCCGCGAACTGAAGAAGGG
AGTTTGGATAAAGACAGGATGTTCCTGGTAGCTGAAAGGAGTATATGCAG
TTCAACGATTTTTTTTTTCCTTTGGAATTTCCTTCTTACTCGAGTTGGAG
GATTTCCCTTTTTGGTTTTGGTCCTTGCTTTACCCTCAGATAGAGGAGAT
CAAAAGGCTTTAATTAATTTAATAGTTCGGGTAGTTGATGTCGCCTTTCT
TCAAATTATTCAAATTACTCGCTCAAAGCGGAGGTGCTTACCGCATATGG
GGAGGCCACGAGGCTACACAATCTTCTAGGTTGAGTAGGCTTGGTCACTG
CTCTTGAGCTTCTTTCTCTCCACACTCGCTCCATTTTTAACATATATTTA
TAATCGTTCTTTTTCGCGCGTTCCTTCTCGGCTTCCTTCCGTGCGTAGGC
AGTCCAAATCACAAATCTTTTTTTCTAGGATATTATCAAACAAGTAAGGA
AAGCACACGATTACAACTTATCTTAGCCTACCCTCCCTCGTCCAGGCTTT
CTCTCGCTCTATGAGGATCATTATCATTCCACTTCTCAGGGATTCCCCCT
TCAACCACCTTTTGTCCTTTTTGCACACATCCTCCGCCCCTCCCCGTCAT
CCATTTCTCCTTCACCCCCTTAACCCTGCATCTTCAGGCCCAACAGCATG
GATGCTGCCACTAAACGGTCGCACTTCATGTCCACATGGCACTGGCGCTT
CTTCAAAGGCAAACGAGCGTCGTCAATCTCTTGTTGACGCTTCTTCTTTT
CCTCCTTCTCTTCTTCCTTCTCCTCCTCTTCCCCGTCCTTCACCTCTTCC
TTTTCTTCTTCTTCATCCTCCTCTTCCTCTTCCCCCTCGTCTTCCTCCTC
ATCTTCCTCTTGTATGTACTGCCGCCCGATATTACCGCTACTCGTGCTTG
AGCCTTTGTCCTCGTCCGAGCCTTCGGCAATTACAGGCCCGGGGGCAGGA
GGGAACTTGACAAGATTACCATCGGTGACGTTGCACATTTTGTTGCTGCC
ACCGCTATTAATGCTGTTCTTCATGCTGCTACTGGTGCCTGTAGTGTGGG
CGCTGCTGAGGATATTAGCAACGGTAGAGAGCCTCCCGCTGCAGCGTCTG
CTGCTGCTACTGCTGCTGCAATTCTTCTTGTTGCTGTTGTTTCTGCTGCT
GCTGTTGCTGCTGCTGCTGCTGTTGTTATTGTTGTTGT back to topCoding sequence (CDS) from alignment at scaffold_60:52692..55629+ >mRNA_10312 ID=mRNA_10312|Name=jgi.p|Nanoce1779_2|611927|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at scaffold_60:52692..55629+ (Nannochloropsis oceanica)
ATGATCCTGGCTAAGTCCTTCGCGACCCAATCCCTGCGCCACCAGGCCAC
CGCCACCGCCGCCAAGAAGCTGGCCTCCGTGCAGCTCTTCTCGACGGTTC
GCGAGACCCTCCCCCATCACCCGTCCGATAAGGCCGCGATTGCTGAGGTG
GCGGCGACGACTGAAAAATGGCTCAAGACCGTCACTGGCCAGAAGCCGAC
CAGCCCCGCGGAGACGGCCGCCCTCTACGCTAACGACGGCGTTCTCTGGG
CCACCGTATCCACGGAGCTGCGCGTGAACCCCAAGGAGATCCGCGACTAC
TTTGACGTGTTTGCACGCCTGCCTAACCTGACCGTGACGGACTACAAGCC
CTTCATCCGCATGTATGGGGACATCGCCCTGAACGACGGCTACTACACCG
TGCACTTCGACTCCCCCGACGGCAAGAAGGTCACGACCAAGGCCCGCTAC
GTCTTCGTCTACAAACGCAACGAGTCCTCGGGCGCTTGGGAGATCATTGA
CCACCATTCCTCGGCCATGCCCGTGGCACCCGCGGGACTCAAGACAGCCA
CCACCGTCGCACCTCCGACGTCCCATTAGATGATCCTGGCTAAGTCCTTC
GCGACCCAATCCCTGCGCCACCAGGCCACCGCCACCGCCGCCAAGAAGCT
GGCCTCCGTGCAGCTCTTCTCGACGGTTCGCGAGACCCTCCCCCATCACC
CGTCCGATAAGGCCGCGATTGCTGAGGTGGCGGCGACGACTGAAAAATGG
CTCAAGACCGTCACTGGCCAGAAGCCGACCAGCCCCGCGGAGACGGCCGC
CCTCTACGCTAACGACGGCGTTCTCTGGGCCACCGTATCCACGGAGCTGC
GCGTGAACCCCAAGGAGATCCGCGACTACTTTGACGTGTTTGCACGCCTG
CCTAACCTGACCGTGACGGACTACAAGCCCTTCATCCGCATGTATGGGGA
CATCGCCCTGAACGACGGCTACTACACCGTGCACTTCGACTCCCCCGACG
GCAAGAAGGTCACGACCAAGGCCCGCTACGTCTTCGTCTACAAACGCAAC
GAGTCCTCGGGCGCTTGGGAGATCATTGACCACCATTCCTCGGCCATGCC
CGTGGCACCCGCGGGACTCAAGACAGCCACCACCGTCGCACCTCCGACGT
CCCATTAG back to top
|