jgi.p|Nanoce1779_2|374266, mRNA_10309 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|374266
Unique Name	mRNA_10309
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1801
Alignment location	scaffold_60:43836..45788 -

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Properties


Property Name	Value
TranscriptId	374352
Track	FilteredModels2
ProteinId	374266

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_60	supercontig	scaffold_60:43836..45788 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|374266	gene_10309	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|374266	mRNA_10309-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10309	CDS_10309	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_60:43836..45788-
coding sequence from alignment at scaffold_60:43836..45788-

mRNA sequence

>mRNA_10309 ID=mRNA_10309|Name=jgi.p|Nanoce1779_2|374266|organism=Nannochloropsis oceanica|type=mRNA|length=1801bp
GGGCAGGTGTTTCTCTCCAAGAGGGCAGCAGCAGATGCCTTGCTCCTGCA
GCTGGTTCAGGAGGAGGAGCACCGGAAGCTTAAGGCACTCAAGCGGAGGG
AGAAAGAGAGGGAAAAAAGGATGCAAAGGGCGCAGGCGCAAGCGCAAGCA
CGAGGAGAAAAAGGAGAAGAAGAAGAGGAAGGAGCGAGAGGAGATCAGAC
CACCCACCAGAAATGGCAGGACGGGAGGGAGGATCAGCAGCTGCAGGAGG
AGTACCGAAAGCAACAGCAGGAACACCCCACCAGAATCCGATGACATCCT
CGAAGCACCCCAATCCCCCCTCTTCCTCCTCCACCACCTCCTCCTCCATT
GTAACCCACCTCAAAGGAAGCAGAGATGATGCTCCTGCTTCTGCCGCGCG
TGCCCAGTCTCAGCCCCATCGTTCCCTTCCTCCTCACGCTCCTCACGCTC
TCTCCATTCTCGAGACCTTAGGGGGGAACCTCCCTCCCCTCTCCGTCAAG
ACCACCACAGCTGCTATTGCAGGAGGAGGATCGACGGCAGCTCCCTCCTC
TCGCAATCCAGGAGGGAAGAAGGGGAAAGTAGGAGAGGGAGAAAGGGAAG
GAGGCGGGGTGCAGGAGGAAGCATGGAGGCCCTTGTCCCCTTCCTCCTTG
GCCAAGGCAAGAGCGAGCGTCCACCAGGAGGCGAAACACTTCCTATCGAA
AGCAGTGACGAAGATGCCAGTGCAGCTGGGGCCTGTTCGGGTGTTGTGCT
TTGGCAAAATTGATTCCACTAGGCCCAAGTACCATTGCGAGACAGAGATC
TGGCCTGTGGGATTCAAGGCCGTGCGTGTGGAAGCCAGCCAGGTCCTGCG
GCAGCTCCTCACCCTCACCTTCGAAATTACCGAGGGGGGAAACAAAGGCC
CGAATTTTAGGATTGTGTTGGAGCTTTCCCGTAACCCATCCTTCTTCTCC
TCTTCCTCCTGCTCTTCTTCTTCTTCTCCCCCTTCTCCTGCTGTTGCAGC
TCGTGCTACCGGCGCGGCGGCGGGAACGGTAGAGGTGGGGACAGTAGTGA
AAGACGAAGTGGCACCAGCTGCACTTCCAACGGTAGTAGCAGGAGCAGTA
ATAGCAGGAGGGGCTGGAGGAGGAGGGGGAGGGGGGCGTTTTGTATTTCA
CGGTCGGAATGCGCGGAAGGCTTGGGGGGATGCACTCGACAAATTGTGTG
CCTTGGAGAAGGAGGTGATGGCGCGAAGGAGGGCAAGGAAGAGGAGACGC
CTCCTTTCTCGCCAGGAGGGTGGAGGTAAGGGGAACGAAGAGGGAATGAA
CGAGGAGGAGGAGGAGGGGATGAATGTCGTAGAATGCAATGATGAGGAGG
CAGCCCTCCGACGAAAGGTAGCGAAGTTGTACACGGAGAGAGTGCTGCTG
GAGAAGGAGGTGGCCAAGGAACGCCTGCACATTGTCACGCGTCTGGAGCG
CGAAGCCACGCTTGAGGCGTATACGTGGCTGAACCAAAAGGCGTCTACTG
CACTGGCTCTGCCTGTGCCCCCCTTGCGGATGCGAGCACCCGTTCCGTTG
CCAGTCCGGAAGAAGGATAAGAAGATTGGAAGGGGAGAGGGGAAGGTCGA
GGAAGACAAACCGAAGGAGGAGGAGGGGGTGGAGGAAGAGGAGATGGAGG
AGGAGCCTGTGAGACCGTGGGTGGATTATAGATCGTTTTTACAGAGAGCA
TTAGGAGGTTGATCGAGGGGATGCCCGGGGCAGACAAGTGCGCCTTGTAT
GAGTTTGTGGATCTCAGGAGCAGCAGGGGGAGGGAGATAAGGAGGGAGGC
C

protein sequence of jgi.p|Nanoce1779_2|374266

>mRNA_10309-protein ID=mRNA_10309-protein|Name=jgi.p|Nanoce1779_2|374266|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MAGREGGSAAAGGVPKATAGTPHQNPMTSSKHPNPPSSSSTTSSSIVTHL
KGSRDDAPASAARAQSQPHRSLPPHAPHALSILETLGGNLPPLSVKTTTA
AIAGGGSTAAPSSRNPGGKKGKVGEGEREGGGVQEEAWRPLSPSSLAKAR
ASVHQEAKHFLSKAVTKMPVQLGPVRVLCFGKIDSTRPKYHCETEIWPVG
FKAVRVEASQVLRQLLTLTFEITEGGNKGPNFRIVLELSRNPSFFSSSSC
SSSSSPPSPAVAARATGAAAGTVEVGTVVKDEVAPAALPTVVAGAVIAGG
AGGGGGGGRFVFHGRNARKAWGDALDKLCALEKEVMARRRARKRRRLLSR
QEGGGKGNEEGMNEEEEEGMNVVECNDEEAALRRKVAKLYTERVLLEKEV
AKERLHIVTRLEREATLEAYTWLNQKASTALALPVPPLRMRAPVPLPVRK
KDKKIGRGEGKVEEDKPKEEEGVEEEEMEEEPVRPWVDYRSFLQRALGG*

mRNA from alignment at scaffold_60:43836..45788-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10309 ID=mRNA_10309|Name=jgi.p|Nanoce1779_2|374266|organism=Nannochloropsis oceanica|type=mRNA|length=1953bp|location=Sequence derived from alignment at scaffold_60:43836..45788- (Nannochloropsis oceanica)
GGGCAGGTGTTTCTCTCCAAGAGGGCAGCAGCAGATGCCTTGCTCCTGCA
GCTGGTTCAGGAGGAGGAGCACCGGAAGCTTAAGGCACTCAAGCGGAGGG
AGAAAGAGAGGGAAAAAAGGATGCAAAGGGCGCAGGCGCAAGCGCAAGCA
CGAGGAGAAAAAGGAGAAGAAGAAGAGGAAGGAGCGAGAGGAGATCAGAC
CACCCACCAGAAATGGCAGGACGGGAGGGAGGATCAGCAGCTGCAGGAGG
AGTACCGAAAGCAACAGCAGGAACACCCCACCAGAATCCGATGACATCCT
CGAAGCACCCCAATCCCCCCTCTTCCTCCTCCACCACCTCCTCCTCCATT
GTAACCCACCTCAAAGGAAGCAGAGATGATGCTCCTGCTTCTGCCGCGCG
TGCCCAGTCTCAGCCCCATCGTTCCCTTCCTCCTCACGCTCCTCACGCTC
TCTCCATTCTCGAGACCTTAGGGGGGAACCTCCCTCCCCTCTCCGTCAAG
ACCACCACAGCTGCTATTGCAGGAGGAGGATCGACGGCAGCTCCCTCCTC
TCGCAATCCAGGAGGGAAGAAGGGGAAAGTAGGAGAGGGAGAAAGGGAAG
GAGGCGGGGTGCAGGAGGAAGCATGGAGGCCCTTGTCCCCTTCCTCCTTG
GCCAAGGCAAGAGCGAGCGTCCACCAGGAGGCGAAACACTTCCTATCGAA
AGCAGTGACGAAGATGCCAGTGCAGCTGGGGCCTGTTCGGGTGTTGTGCT
TTGGTAGGGGGGAGGGAAGGAGCGGGGGGAAGGGAGCAGGGAGGGAGGTG
TCTGAATGTTCACAAGCAGGCCGTGAGTCACGGTAAGGAATATAAAATTC
TCATTCCTTAAACTAATTTTCCTCCCCACCTTCCTCCCTCCCTCCCTCCT
TGCAGGCAAAATTGATTCCACTAGGCCCAAGTACCATTGCGAGACAGAGA
TCTGGCCTGTGGGATTCAAGGCCGTGCGTGTGGAAGCCAGCCAGGTCCTG
CGGCAGCTCCTCACCCTCACCTTCGAAATTACCGAGGGGGGAAACAAAGG
CCCGAATTTTAGGATTGTGTTGGAGCTTTCCCGTAACCCATCCTTCTTCT
CCTCTTCCTCCTGCTCTTCTTCTTCTTCTCCCCCTTCTCCTGCTGTTGCA
GCTCGTGCTACCGGCGCGGCGGCGGGAACGGTAGAGGTGGGGACAGTAGT
GAAAGACGAAGTGGCACCAGCTGCACTTCCAACGGTAGTAGCAGGAGCAG
TAATAGCAGGAGGGGCTGGAGGAGGAGGGGGAGGGGGGCGTTTTGTATTT
CACGGTCGGAATGCGCGGAAGGCTTGGGGGGATGCACTCGACAAATTGTG
TGCCTTGGAGAAGGAGGTGATGGCGCGAAGGAGGGCAAGGAAGAGGAGAC
GCCTCCTTTCTCGCCAGGAGGGTGGAGGTAAGGGGAACGAAGAGGGAATG
AACGAGGAGGAGGAGGAGGGGATGAATGTCGTAGAATGCAATGATGAGGA
GGCAGCCCTCCGACGAAAGGTAGCGAAGTTGTACACGGAGAGAGTGCTGC
TGGAGAAGGAGGTGGCCAAGGAACGCCTGCACATTGTCACGCGTCTGGAG
CGCGAAGCCACGCTTGAGGCGTATACGTGGCTGAACCAAAAGGCGTCTAC
TGCACTGGCTCTGCCTGTGCCCCCCTTGCGGATGCGAGCACCCGTTCCGT
TGCCAGTCCGGAAGAAGGATAAGAAGATTGGAAGGGGAGAGGGGAAGGTC
GAGGAAGACAAACCGAAGGAGGAGGAGGGGGTGGAGGAAGAGGAGATGGA
GGAGGAGCCTGTGAGACCGTGGGTGGATTATAGATCGTTTTTACAGAGAG
CATTAGGAGGTTGATCGAGGGGATGCCCGGGGCAGACAAGTGCGCCTTGT
ATGAGTTTGTGGATCTCAGGAGCAGCAGGGGGAGGGAGATAAGGAGGGAG
GCC

Coding sequence (CDS) from alignment at scaffold_60:43836..45788-

>mRNA_10309 ID=mRNA_10309|Name=jgi.p|Nanoce1779_2|374266|organism=Nannochloropsis oceanica|type=CDS|length=3000bp|location=Sequence derived from alignment at scaffold_60:43836..45788- (Nannochloropsis oceanica)
GCAAAATTGATTCCACTAGGCCCAAGTACCATTGCGAGACAGAGATCTGG
CCTGTGGGATTCAAGGCCGTGCGTGTGGAAGCCAGCCAGGTCCTGCGGCA
GCTCCTCACCCTCACCTTCGAAATTACCGAGGGGGGAAACAAAGGCCCGA
ATTTTAGGATTGTGTTGGAGCTTTCCCGTAACCCATCCTTCTTCTCCTCT
TCCTCCTGCTCTTCTTCTTCTTCTCCCCCTTCTCCTGCTGTTGCAGCTCG
TGCTACCGGCGCGGCGGCGGGAACGGTAGAGGTGGGGACAGTAGTGAAAG
ACGAAGTGGCACCAGCTGCACTTCCAACGGTAGTAGCAGGAGCAGTAATA
GCAGGAGGGGCTGGAGGAGGAGGGGGAGGGGGGCGTTTTGTATTTCACGG
TCGGAATGCGCGGAAGGCTTGGGGGGATGCACTCGACAAATTGTGTGCCT
TGGAGAAGGAGGTGATGGCGCGAAGGAGGGCAAGGAAGAGGAGACGCCTC
CTTTCTCGCCAGGAGGGTGGAGGTAAGGGGAACGAAGAGGGAATGAACGA
GGAGGAGGAGGAGGGGATGAATGTCGTAGAATGCAATGATGAGGAGGCAG
CCCTCCGACGAAAGGTAGCGAAGTTGTACACGGAGAGAGTGCTGCTGGAG
AAGGAGGTGGCCAAGGAACGCCTGCACATTGTCACGCGTCTGGAGCGCGA
AGCCACGCTTGAGGCGTATACGTGGCTGAACCAAAAGGCGTCTACTGCAC
TGGCTCTGCCTGTGCCCCCCTTGCGGATGCGAGCACCCGTTCCGTTGCCA
GTCCGGAAGAAGGATAAGAAGATTGGAAGGGGAGAGGGGAAGGTCGAGGA
AGACAAACCGAAGGAGGAGGAGGGGGTGGAGGAAGAGGAGATGGAGGAGG
AGCCTGTGAGACCGTGGGTGGATTATAGATCGTTTTTACAGAGAGCATTA
GGAGGTTGAATGGCAGGACGGGAGGGAGGATCAGCAGCTGCAGGAGGAGT
ACCGAAAGCAACAGCAGGAACACCCCACCAGAATCCGATGACATCCTCGA
AGCACCCCAATCCCCCCTCTTCCTCCTCCACCACCTCCTCCTCCATTGTA
ACCCACCTCAAAGGAAGCAGAGATGATGCTCCTGCTTCTGCCGCGCGTGC
CCAGTCTCAGCCCCATCGTTCCCTTCCTCCTCACGCTCCTCACGCTCTCT
CCATTCTCGAGACCTTAGGGGGGAACCTCCCTCCCCTCTCCGTCAAGACC
ACCACAGCTGCTATTGCAGGAGGAGGATCGACGGCAGCTCCCTCCTCTCG
CAATCCAGGAGGGAAGAAGGGGAAAGTAGGAGAGGGAGAAAGGGAAGGAG
GCGGGGTGCAGGAGGAAGCATGGAGGCCCTTGTCCCCTTCCTCCTTGGCC
AAGGCAAGAGCGAGCGTCCACCAGGAGGCGAAACACTTCCTATCGAAAGC
AGTGACGAAGATGCCAGTGCAGCTGGGGCCTGTTCGGGTGTTGTGCTTTG
GCAAAATTGATTCCACTAGGCCCAAGTACCATTGCGAGACAGAGATCTGG
CCTGTGGGATTCAAGGCCGTGCGTGTGGAAGCCAGCCAGGTCCTGCGGCA
GCTCCTCACCCTCACCTTCGAAATTACCGAGGGGGGAAACAAAGGCCCGA
ATTTTAGGATTGTGTTGGAGCTTTCCCGTAACCCATCCTTCTTCTCCTCT
TCCTCCTGCTCTTCTTCTTCTTCTCCCCCTTCTCCTGCTGTTGCAGCTCG
TGCTACCGGCGCGGCGGCGGGAACGGTAGAGGTGGGGACAGTAGTGAAAG
ACGAAGTGGCACCAGCTGCACTTCCAACGGTAGTAGCAGGAGCAGTAATA
GCAGGAGGGGCTGGAGGAGGAGGGGGAGGGGGGCGTTTTGTATTTCACGG
TCGGAATGCGCGGAAGGCTTGGGGGGATGCACTCGACAAATTGTGTGCCT
TGGAGAAGGAGGTGATGGCGCGAAGGAGGGCAAGGAAGAGGAGACGCCTC
CTTTCTCGCCAGGAGGGTGGAGGTAAGGGGAACGAAGAGGGAATGAACGA
GGAGGAGGAGGAGGGGATGAATGTCGTAGAATGCAATGATGAGGAGGCAG
CCCTCCGACGAAAGGTAGCGAAGTTGTACACGGAGAGAGTGCTGCTGGAG
AAGGAGGTGGCCAAGGAACGCCTGCACATTGTCACGCGTCTGGAGCGCGA
AGCCACGCTTGAGGCGTATACGTGGCTGAACCAAAAGGCGTCTACTGCAC
TGGCTCTGCCTGTGCCCCCCTTGCGGATGCGAGCACCCGTTCCGTTGCCA
GTCCGGAAGAAGGATAAGAAGATTGGAAGGGGAGAGGGGAAGGTCGAGGA
AGACAAACCGAAGGAGGAGGAGGGGGTGGAGGAAGAGGAGATGGAGGAGG
AGCCTGTGAGACCGTGGGTGGATTATAGATCGTTTTTACAGAGAGCATTA
GGAGGTTGAATGGCAGGACGGGAGGGAGGATCAGCAGCTGCAGGAGGAGT
ACCGAAAGCAACAGCAGGAACACCCCACCAGAATCCGATGACATCCTCGA
AGCACCCCAATCCCCCCTCTTCCTCCTCCACCACCTCCTCCTCCATTGTA
ACCCACCTCAAAGGAAGCAGAGATGATGCTCCTGCTTCTGCCGCGCGTGC
CCAGTCTCAGCCCCATCGTTCCCTTCCTCCTCACGCTCCTCACGCTCTCT
CCATTCTCGAGACCTTAGGGGGGAACCTCCCTCCCCTCTCCGTCAAGACC
ACCACAGCTGCTATTGCAGGAGGAGGATCGACGGCAGCTCCCTCCTCTCG
CAATCCAGGAGGGAAGAAGGGGAAAGTAGGAGAGGGAGAAAGGGAAGGAG
GCGGGGTGCAGGAGGAAGCATGGAGGCCCTTGTCCCCTTCCTCCTTGGCC
AAGGCAAGAGCGAGCGTCCACCAGGAGGCGAAACACTTCCTATCGAAAGC
AGTGACGAAGATGCCAGTGCAGCTGGGGCCTGTTCGGGTGTTGTGCTTTG

Synonyms

Publications