jgi.p|Nanoce1779_2|611902, mRNA_10304 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611902
Unique NamemRNA_10304
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1112
Alignment locationscaffold_60:29583..30694 -

Link to JBrowse

Properties
Property NameValue
TranscriptId611988
TrackFilteredModels2
ProteinId611902
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:29583..30694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611902gene_10304Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611902mRNA_10304-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10304CDS_10304Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10304 ID=mRNA_10304|Name=jgi.p|Nanoce1779_2|611902|organism=Nannochloropsis oceanica|type=mRNA|length=1112bp
AGAGGTAGACAACACTGACGAGGACGAATTGGAGAATGGTAGACAAAGAG
GAGGAGGAGCAGGAGGAGGAGGAAGAAGGGAGGGAGGGCTAGGTATGCAA
GAAATGCAAGAGTGGTTAGAAAGCGCTAAAGTCAAGCTTTCACCGGAGCG
TTTCGCGCTTCTCAATGACCGAATCAAAGAGGTTCTGAGAGGCACAATGC
ATACCCTGAAAGACTTTCAAACCTGGTCCTCTGGCGGAAAAGGCGGGGCC
GTTGACGTCTTTCTGTCCACAGGCGCCGATCCCTCCTTCCTCTCCCGCTT
CGCCTATTCATTCCTGCCCTCATTCCTCCGTCCAGTATTCGATGGCATGA
TCAAAACGAGATATCGTCCTCCTTCTCGACATCCTCTGGCGAGGGCAGGA
GGGGTGGCCAAGACTGCTGCTGCAGCGGCATCAGCAGCAGCGATGGCTGC
GATGGTGGTTACTAAGCAGGAGGCAGGGAAGGGGAAGGCGTTTTATGCTC
CCGGTGCGGAGGAGGATTACTTAATAAGGCGTGCGGTGAAGCGGCCCAAG
ACGACGGCTGGACAAAAAGATGAGGAGAGCGGAAGACAGGAAGGGAGGGC
TGGAGAAGAGAGGGACGAAAACAAGGATAGGAATGTAATTGAGCGGCTGC
AGCATTTGGTGGATCGCGGTCTGGGTGATGCAAAGAAAGGAACAAAGAAG
CGGGAGGGTGGGGACGAAGAAAGAGGCAGCAAAAGTGGACGACAGCAGAA
GTGTCCGATTTGCGACGAGACCTTGGCGGTCTTTATGTCCCCGTGTGGTC
ACATTGCATGCATGTCTTGCTGGAAGCGCTGGCTAAATAGGAAAGCCGCT
CCTGGTGGAGGAGCGGGGAGTACGAGTACGTGCTTTTATAAGTGCGGTCC
CGTGACCCTGTATTCCCTCAAACGCGTTTTGGCGGGGATCGTGAAGGCGC
CGCCCTTGCCGGTGGCAACGCAGGAAGGAGGGACGGAGGGAAACAAGACG
GCGTCTTTGTCGTCGTCGTCCCAGTCATAAAAGTGTTGACTAAGTAGATT
GAATAGCAAAATAGTATTAGGAATGAAAATTGAAAGCACCCCAAAGTAAA
GAAAACAAATGT
back to top

protein sequence of jgi.p|Nanoce1779_2|611902

>mRNA_10304-protein ID=mRNA_10304-protein|Name=jgi.p|Nanoce1779_2|611902|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MQEMQEWLESAKVKLSPERFALLNDRIKEVLRGTMHTLKDFQTWSSGGKG
GAVDVFLSTGADPSFLSRFAYSFLPSFLRPVFDGMIKTRYRPPSRHPLAR
AGGVAKTAAAAASAAAMAAMVVTKQEAGKGKAFYAPGAEEDYLIRRAVKR
PKTTAGQKDEESGRQEGRAGEERDENKDRNVIERLQHLVDRGLGDAKKGT
KKREGGDEERGSKSGRQQKCPICDETLAVFMSPCGHIACMSCWKRWLNRK
AAPGGGAGSTSTCFYKCGPVTLYSLKRVLAGIVKAPPLPVATQEGGTEGN
KTASLSSSSQS*
back to top

mRNA from alignment at scaffold_60:29583..30694-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10304 ID=mRNA_10304|Name=jgi.p|Nanoce1779_2|611902|organism=Nannochloropsis oceanica|type=mRNA|length=1112bp|location=Sequence derived from alignment at scaffold_60:29583..30694- (Nannochloropsis oceanica)
AGAGGTAGACAACACTGACGAGGACGAATTGGAGAATGGTAGACAAAGAG
GAGGAGGAGCAGGAGGAGGAGGAAGAAGGGAGGGAGGGCTAGGTATGCAA
GAAATGCAAGAGTGGTTAGAAAGCGCTAAAGTCAAGCTTTCACCGGAGCG
TTTCGCGCTTCTCAATGACCGAATCAAAGAGGTTCTGAGAGGCACAATGC
ATACCCTGAAAGACTTTCAAACCTGGTCCTCTGGCGGAAAAGGCGGGGCC
GTTGACGTCTTTCTGTCCACAGGCGCCGATCCCTCCTTCCTCTCCCGCTT
CGCCTATTCATTCCTGCCCTCATTCCTCCGTCCAGTATTCGATGGCATGA
TCAAAACGAGATATCGTCCTCCTTCTCGACATCCTCTGGCGAGGGCAGGA
GGGGTGGCCAAGACTGCTGCTGCAGCGGCATCAGCAGCAGCGATGGCTGC
GATGGTGGTTACTAAGCAGGAGGCAGGGAAGGGGAAGGCGTTTTATGCTC
CCGGTGCGGAGGAGGATTACTTAATAAGGCGTGCGGTGAAGCGGCCCAAG
ACGACGGCTGGACAAAAAGATGAGGAGAGCGGAAGACAGGAAGGGAGGGC
TGGAGAAGAGAGGGACGAAAACAAGGATAGGAATGTAATTGAGCGGCTGC
AGCATTTGGTGGATCGCGGTCTGGGTGATGCAAAGAAAGGAACAAAGAAG
CGGGAGGGTGGGGACGAAGAAAGAGGCAGCAAAAGTGGACGACAGCAGAA
GTGTCCGATTTGCGACGAGACCTTGGCGGTCTTTATGTCCCCGTGTGGTC
ACATTGCATGCATGTCTTGCTGGAAGCGCTGGCTAAATAGGAAAGCCGCT
CCTGGTGGAGGAGCGGGGAGTACGAGTACGTGCTTTTATAAGTGCGGTCC
CGTGACCCTGTATTCCCTCAAACGCGTTTTGGCGGGGATCGTGAAGGCGC
CGCCCTTGCCGGTGGCAACGCAGGAAGGAGGGACGGAGGGAAACAAGACG
GCGTCTTTGTCGTCGTCGTCCCAGTCATAAAAGTGTTGACTAAGTAGATT
GAATAGCAAAATAGTATTAGGAATGAAAATTGAAAGCACCCCAAAGTAAA
GAAAACAAATGT
back to top

Coding sequence (CDS) from alignment at scaffold_60:29583..30694-

>mRNA_10304 ID=mRNA_10304|Name=jgi.p|Nanoce1779_2|611902|organism=Nannochloropsis oceanica|type=CDS|length=936bp|location=Sequence derived from alignment at scaffold_60:29583..30694- (Nannochloropsis oceanica)
ATGCAAGAAATGCAAGAGTGGTTAGAAAGCGCTAAAGTCAAGCTTTCACC
GGAGCGTTTCGCGCTTCTCAATGACCGAATCAAAGAGGTTCTGAGAGGCA
CAATGCATACCCTGAAAGACTTTCAAACCTGGTCCTCTGGCGGAAAAGGC
GGGGCCGTTGACGTCTTTCTGTCCACAGGCGCCGATCCCTCCTTCCTCTC
CCGCTTCGCCTATTCATTCCTGCCCTCATTCCTCCGTCCAGTATTCGATG
GCATGATCAAAACGAGATATCGTCCTCCTTCTCGACATCCTCTGGCGAGG
GCAGGAGGGGTGGCCAAGACTGCTGCTGCAGCGGCATCAGCAGCAGCGAT
GGCTGCGATGGTGGTTACTAAGCAGGAGGCAGGGAAGGGGAAGGCGTTTT
ATGCTCCCGGTGCGGAGGAGGATTACTTAATAAGGCGTGCGGTGAAGCGG
CCCAAGACGACGGCTGGACAAAAAGATGAGGAGAGCGGAAGACAGGAAGG
GAGGGCTGGAGAAGAGAGGGACGAAAACAAGGATAGGAATGTAATTGAGC
GGCTGCAGCATTTGGTGGATCGCGGTCTGGGTGATGCAAAGAAAGGAACA
AAGAAGCGGGAGGGTGGGGACGAAGAAAGAGGCAGCAAAAGTGGACGACA
GCAGAAGTGTCCGATTTGCGACGAGACCTTGGCGGTCTTTATGTCCCCGT
GTGGTCACATTGCATGCATGTCTTGCTGGAAGCGCTGGCTAAATAGGAAA
GCCGCTCCTGGTGGAGGAGCGGGGAGTACGAGTACGTGCTTTTATAAGTG
CGGTCCCGTGACCCTGTATTCCCTCAAACGCGTTTTGGCGGGGATCGTGA
AGGCGCCGCCCTTGCCGGTGGCAACGCAGGAAGGAGGGACGGAGGGAAAC
AAGACGGCGTCTTTGTCGTCGTCGTCCCAGTCATAA
back to top
Synonyms
Publications