jgi.p|Nanoce1779_2|663555, mRNA_10303 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|663555
Unique Name	mRNA_10303
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2227
Alignment location	scaffold_60:27339..29565 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	663641
Track	FilteredModels2
ProteinId	663555

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_60	supercontig	scaffold_60:27339..29565 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|663555	gene_10303	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|663555	mRNA_10303-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10303	CDS_10303	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_60:27339..29565+
coding sequence from alignment at scaffold_60:27339..29565+

mRNA sequence

>mRNA_10303 ID=mRNA_10303|Name=jgi.p|Nanoce1779_2|663555|organism=Nannochloropsis oceanica|type=mRNA|length=2227bp
CATCTCCACTTTGTAAGCACCATCCCTTTTTCACTTCATACTTTCATTTT
TGGGGCATGTTCCCCTCATAACCATTCACCCCTCATATATGTGTTCTACA
ATAAGTAATGCTAGAATGTCTCAGCCTACCTCGGATGTTCGCATAGAGAT
GTGGTCCTTCCTCGGTCCTGAGAAGCCCTCCTCGGATGCCCGCTTTCGCA
TGGCCCATCGCCAGCTCGATGTTGCGAGCAACAAGCCGCGCACGGGACCG
GCAATTGCACCACGCCCCGCCACGGATACCTATGACATTGGGGGGCCAGC
TCCTATATGCTGGAAGACTGTCGATTCCATTGTTTCGCGCCTGGCTTCCT
GCCCGGCAGGCCTTGCTGTAGAATTCTTGCAGACGCCGCCCACAACCGTC
TTTGCTAATGATGATTACCTCACTACCTACAAGATAATAATTGATCCTCT
GAGCTGGCGAGTCATCCCTGTCAATGAAAATGGCACCAGTTATGACGTGC
CGCACGCAATTATTCGCTCATGCCGCAACAAGGTGGGGTTTTGCACGCCT
TTCATCGAGGACATGCCGGGGCTCTCCTTTTCCACCCTGCCCGTGGCCGG
AAACTTGAGTGCTTTCCAGCAAAATCGTAGCAGTTCTACATTCACCTCAT
CTGTGAAGTTCGAGCCCGGCTCATACACAAATATTGCCCACTTGCAGCTT
TGGGGCCGGGACGCTACCGGTGAGGATGCGAAGTATGACATTGCCGCCGC
CTTTGTGCGGGACGTGCTGCCAGCCCGCAAGATCCTGGCGGTGGCACCAG
CGGTTCAATACACCATGGCGGCTGTTATTGCACTTGCTTGTCTTTTTCTG
GCCTTGTGCTTCGCTTGCATATTTCACTGGCGCTCGCACAAGATCATGCG
TTTTTCGCAAGTCAACATCTTGATGTATATGACGGTGGCGGGCTTCGTGG
CCTTATGCGGGGTGCCCCTGGCAGCAGTCAACACCCAAGAAGCTTGCTCC
CTTCGCCCTTGGATGACCATCATCCCCTTGAACTTTATGTTTGCTTTGCT
GTTCGGCAAGACATGGCGGATATTCCGGCTGATGAATAACAAGCAGCTGA
AGGCCATTAGAATCAAGGAGACCTACGTCCTGTATGTTGCGTTCCTCCTG
ACCCTGCCCGAGATTCTCATCCACGGCTTCTACTTCCTGTTATTCCCTCC
ACGCTTGCAACTCACCCGGGTCATCAATGACTATACGTTCCTTTTCGAGT
GCACCGGAGGTTCTCCCGCCAAGAACATTTTTGACGGCCTTCATCTAGCC
TATGCCACGATTATTCTCCTCCTGGGGTGCTACGTTGCCGACAAATCCGC
CTCCCTCACCACGCTCTTCAACGAAGGAAAGTACATCCTCTTCGCCATTT
ACACATGTTTTGTCTTGTCTGTCATCATCGTCCCTGCTTCCTTCGCAGTA
GCCACGGACCCCCAGACAGGCTTCATCTTGCGGACTCTCGGCGTGACTTT
GGCCGTGACTGGCACCATAAGTGCTATTATTCTACCCAAGGTCAAACTTA
TCCTCTCGGGGGTCGATTTCTCGCTCGATGATGGCAAGACAAACACTACG
AATACTGTCAAGTCGAACAACACCCAAAGCGGGTCAAAGGCCACGTCCGC
TAGTACTATGGCAGCTCCGACGCCGGCAGGACCCGCGAGGGATATCATCC
AAGTCAAGAATCGCGTGCCCTCTGCTGTAATGGAAACGCTTGGCGACGCC
TTGACGGCAGGAAACAAAGTTGTTGACCGTCAAATGCAAGGATTTGCACT
CCAGCGCCCAGATTGGGATACGTGCGTGGATCAAGTCCGCAGCTTGAACG
AGACTTTGCAGCGCTGTGTCTTGAACAGTAACGCACAGGGCACCGCGAAC
GGTGGAACTAGTGGTTTTTCTGCCAAAGTGGCTCCTTCCAACATCTGAGG
ACCACTTTCATAGTAATCAAGTACCTACATGTCAATCAAATATAATTAAT
TGAAGTAGCTTAATTTCAGATCGAGTGAGTGGTTTCCACTTGAGTGCACA
GTGAGAGCCTGTGAGAGCAGACATCGCGCGTCAAAATGTGCGCTTGCTTT
TTTATGTTTTACCAGCCGCTGGGTGAGAAATTCGCAAAAAATAAGCTTGA
CAGAGGAAGTCCCTATCCTCAAGCCGGAAGCACCTATGTCAGGGAGTCAA
ACAAAAAGAGGAAATAAGTACAGAGAA

protein sequence of jgi.p|Nanoce1779_2|663555

>mRNA_10303-protein ID=mRNA_10303-protein|Name=jgi.p|Nanoce1779_2|663555|organism=Nannochloropsis oceanica|type=polypeptide|length=620bp
MCSTISNARMSQPTSDVRIEMWSFLGPEKPSSDARFRMAHRQLDVASNKP
RTGPAIAPRPATDTYDIGGPAPICWKTVDSIVSRLASCPAGLAVEFLQTP
PTTVFANDDYLTTYKIIIDPLSWRVIPVNENGTSYDVPHAIIRSCRNKVG
FCTPFIEDMPGLSFSTLPVAGNLSAFQQNRSSSTFTSSVKFEPGSYTNIA
HLQLWGRDATGEDAKYDIAAAFVRDVLPARKILAVAPAVQYTMAAVIALA
CLFLALCFACIFHWRSHKIMRFSQVNILMYMTVAGFVALCGVPLAAVNTQ
EACSLRPWMTIIPLNFMFALLFGKTWRIFRLMNNKQLKAIRIKETYVLYV
AFLLTLPEILIHGFYFLLFPPRLQLTRVINDYTFLFECTGGSPAKNIFDG
LHLAYATIILLLGCYVADKSASLTTLFNEGKYILFAIYTCFVLSVIIVPA
SFAVATDPQTGFILRTLGVTLAVTGTISAIILPKVKLILSGVDFSLDDGK
TNTTNTVKSNNTQSGSKATSASTMAAPTPAGPARDIIQVKNRVPSAVMET
LGDALTAGNKVVDRQMQGFALQRPDWDTCVDQVRSLNETLQRCVLNSNAQ
GTANGGTSGFSAKVAPSNI*

mRNA from alignment at scaffold_60:27339..29565+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10303 ID=mRNA_10303|Name=jgi.p|Nanoce1779_2|663555|organism=Nannochloropsis oceanica|type=mRNA|length=2227bp|location=Sequence derived from alignment at scaffold_60:27339..29565+ (Nannochloropsis oceanica)
CATCTCCACTTTGTAAGCACCATCCCTTTTTCACTTCATACTTTCATTTT
TGGGGCATGTTCCCCTCATAACCATTCACCCCTCATATATGTGTTCTACA
ATAAGTAATGCTAGAATGTCTCAGCCTACCTCGGATGTTCGCATAGAGAT
GTGGTCCTTCCTCGGTCCTGAGAAGCCCTCCTCGGATGCCCGCTTTCGCA
TGGCCCATCGCCAGCTCGATGTTGCGAGCAACAAGCCGCGCACGGGACCG
GCAATTGCACCACGCCCCGCCACGGATACCTATGACATTGGGGGGCCAGC
TCCTATATGCTGGAAGACTGTCGATTCCATTGTTTCGCGCCTGGCTTCCT
GCCCGGCAGGCCTTGCTGTAGAATTCTTGCAGACGCCGCCCACAACCGTC
TTTGCTAATGATGATTACCTCACTACCTACAAGATAATAATTGATCCTCT
GAGCTGGCGAGTCATCCCTGTCAATGAAAATGGCACCAGTTATGACGTGC
CGCACGCAATTATTCGCTCATGCCGCAACAAGGTGGGGTTTTGCACGCCT
TTCATCGAGGACATGCCGGGGCTCTCCTTTTCCACCCTGCCCGTGGCCGG
AAACTTGAGTGCTTTCCAGCAAAATCGTAGCAGTTCTACATTCACCTCAT
CTGTGAAGTTCGAGCCCGGCTCATACACAAATATTGCCCACTTGCAGCTT
TGGGGCCGGGACGCTACCGGTGAGGATGCGAAGTATGACATTGCCGCCGC
CTTTGTGCGGGACGTGCTGCCAGCCCGCAAGATCCTGGCGGTGGCACCAG
CGGTTCAATACACCATGGCGGCTGTTATTGCACTTGCTTGTCTTTTTCTG
GCCTTGTGCTTCGCTTGCATATTTCACTGGCGCTCGCACAAGATCATGCG
TTTTTCGCAAGTCAACATCTTGATGTATATGACGGTGGCGGGCTTCGTGG
CCTTATGCGGGGTGCCCCTGGCAGCAGTCAACACCCAAGAAGCTTGCTCC
CTTCGCCCTTGGATGACCATCATCCCCTTGAACTTTATGTTTGCTTTGCT
GTTCGGCAAGACATGGCGGATATTCCGGCTGATGAATAACAAGCAGCTGA
AGGCCATTAGAATCAAGGAGACCTACGTCCTGTATGTTGCGTTCCTCCTG
ACCCTGCCCGAGATTCTCATCCACGGCTTCTACTTCCTGTTATTCCCTCC
ACGCTTGCAACTCACCCGGGTCATCAATGACTATACGTTCCTTTTCGAGT
GCACCGGAGGTTCTCCCGCCAAGAACATTTTTGACGGCCTTCATCTAGCC
TATGCCACGATTATTCTCCTCCTGGGGTGCTACGTTGCCGACAAATCCGC
CTCCCTCACCACGCTCTTCAACGAAGGAAAGTACATCCTCTTCGCCATTT
ACACATGTTTTGTCTTGTCTGTCATCATCGTCCCTGCTTCCTTCGCAGTA
GCCACGGACCCCCAGACAGGCTTCATCTTGCGGACTCTCGGCGTGACTTT
GGCCGTGACTGGCACCATAAGTGCTATTATTCTACCCAAGGTCAAACTTA
TCCTCTCGGGGGTCGATTTCTCGCTCGATGATGGCAAGACAAACACTACG
AATACTGTCAAGTCGAACAACACCCAAAGCGGGTCAAAGGCCACGTCCGC
TAGTACTATGGCAGCTCCGACGCCGGCAGGACCCGCGAGGGATATCATCC
AAGTCAAGAATCGCGTGCCCTCTGCTGTAATGGAAACGCTTGGCGACGCC
TTGACGGCAGGAAACAAAGTTGTTGACCGTCAAATGCAAGGATTTGCACT
CCAGCGCCCAGATTGGGATACGTGCGTGGATCAAGTCCGCAGCTTGAACG
AGACTTTGCAGCGCTGTGTCTTGAACAGTAACGCACAGGGCACCGCGAAC
GGTGGAACTAGTGGTTTTTCTGCCAAAGTGGCTCCTTCCAACATCTGAGG
ACCACTTTCATAGTAATCAAGTACCTACATGTCAATCAAATATAATTAAT
TGAAGTAGCTTAATTTCAGATCGAGTGAGTGGTTTCCACTTGAGTGCACA
GTGAGAGCCTGTGAGAGCAGACATCGCGCGTCAAAATGTGCGCTTGCTTT
TTTATGTTTTACCAGCCGCTGGGTGAGAAATTCGCAAAAAATAAGCTTGA
CAGAGGAAGTCCCTATCCTCAAGCCGGAAGCACCTATGTCAGGGAGTCAA
ACAAAAAGAGGAAATAAGTACAGAGAA

Coding sequence (CDS) from alignment at scaffold_60:27339..29565+

>mRNA_10303 ID=mRNA_10303|Name=jgi.p|Nanoce1779_2|663555|organism=Nannochloropsis oceanica|type=CDS|length=1860bp|location=Sequence derived from alignment at scaffold_60:27339..29565+ (Nannochloropsis oceanica)
ATGTGTTCTACAATAAGTAATGCTAGAATGTCTCAGCCTACCTCGGATGT
TCGCATAGAGATGTGGTCCTTCCTCGGTCCTGAGAAGCCCTCCTCGGATG
CCCGCTTTCGCATGGCCCATCGCCAGCTCGATGTTGCGAGCAACAAGCCG
CGCACGGGACCGGCAATTGCACCACGCCCCGCCACGGATACCTATGACAT
TGGGGGGCCAGCTCCTATATGCTGGAAGACTGTCGATTCCATTGTTTCGC
GCCTGGCTTCCTGCCCGGCAGGCCTTGCTGTAGAATTCTTGCAGACGCCG
CCCACAACCGTCTTTGCTAATGATGATTACCTCACTACCTACAAGATAAT
AATTGATCCTCTGAGCTGGCGAGTCATCCCTGTCAATGAAAATGGCACCA
GTTATGACGTGCCGCACGCAATTATTCGCTCATGCCGCAACAAGGTGGGG
TTTTGCACGCCTTTCATCGAGGACATGCCGGGGCTCTCCTTTTCCACCCT
GCCCGTGGCCGGAAACTTGAGTGCTTTCCAGCAAAATCGTAGCAGTTCTA
CATTCACCTCATCTGTGAAGTTCGAGCCCGGCTCATACACAAATATTGCC
CACTTGCAGCTTTGGGGCCGGGACGCTACCGGTGAGGATGCGAAGTATGA
CATTGCCGCCGCCTTTGTGCGGGACGTGCTGCCAGCCCGCAAGATCCTGG
CGGTGGCACCAGCGGTTCAATACACCATGGCGGCTGTTATTGCACTTGCT
TGTCTTTTTCTGGCCTTGTGCTTCGCTTGCATATTTCACTGGCGCTCGCA
CAAGATCATGCGTTTTTCGCAAGTCAACATCTTGATGTATATGACGGTGG
CGGGCTTCGTGGCCTTATGCGGGGTGCCCCTGGCAGCAGTCAACACCCAA
GAAGCTTGCTCCCTTCGCCCTTGGATGACCATCATCCCCTTGAACTTTAT
GTTTGCTTTGCTGTTCGGCAAGACATGGCGGATATTCCGGCTGATGAATA
ACAAGCAGCTGAAGGCCATTAGAATCAAGGAGACCTACGTCCTGTATGTT
GCGTTCCTCCTGACCCTGCCCGAGATTCTCATCCACGGCTTCTACTTCCT
GTTATTCCCTCCACGCTTGCAACTCACCCGGGTCATCAATGACTATACGT
TCCTTTTCGAGTGCACCGGAGGTTCTCCCGCCAAGAACATTTTTGACGGC
CTTCATCTAGCCTATGCCACGATTATTCTCCTCCTGGGGTGCTACGTTGC
CGACAAATCCGCCTCCCTCACCACGCTCTTCAACGAAGGAAAGTACATCC
TCTTCGCCATTTACACATGTTTTGTCTTGTCTGTCATCATCGTCCCTGCT
TCCTTCGCAGTAGCCACGGACCCCCAGACAGGCTTCATCTTGCGGACTCT
CGGCGTGACTTTGGCCGTGACTGGCACCATAAGTGCTATTATTCTACCCA
AGGTCAAACTTATCCTCTCGGGGGTCGATTTCTCGCTCGATGATGGCAAG
ACAAACACTACGAATACTGTCAAGTCGAACAACACCCAAAGCGGGTCAAA
GGCCACGTCCGCTAGTACTATGGCAGCTCCGACGCCGGCAGGACCCGCGA
GGGATATCATCCAAGTCAAGAATCGCGTGCCCTCTGCTGTAATGGAAACG
CTTGGCGACGCCTTGACGGCAGGAAACAAAGTTGTTGACCGTCAAATGCA
AGGATTTGCACTCCAGCGCCCAGATTGGGATACGTGCGTGGATCAAGTCC
GCAGCTTGAACGAGACTTTGCAGCGCTGTGTCTTGAACAGTAACGCACAG
GGCACCGCGAACGGTGGAACTAGTGGTTTTTCTGCCAAAGTGGCTCCTTC
CAACATCTGA

Synonyms

Publications