jgi.p|Nanoce1779_2|374068, mRNA_10302 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|374068
Unique Name	mRNA_10302
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2290
Alignment location	scaffold_60:23910..26281 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	374154
Track	FilteredModels2
ProteinId	374068

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_60	supercontig	scaffold_60:23910..26281 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|374068	gene_10302	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|374068	mRNA_10302-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10302	CDS_10302	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_60:23910..26281+
coding sequence from alignment at scaffold_60:23910..26281+

mRNA sequence

>mRNA_10302 ID=mRNA_10302|Name=jgi.p|Nanoce1779_2|374068|organism=Nannochloropsis oceanica|type=mRNA|length=2290bp
AGGTGAGAGTGCCTATGAACAATGTATTCAGTGTGGCAGTATCCTCGAGA
ATGAGCCTCAGGACACACACAGGTCACATCGACGGGGCTAATAGCAGTCT
TACGGCTGGGCCATGTTCACTTTTTTCGTGGCGGCTGCCGTTGGAACACG
ACGACGTAATTTAGGTATTTAGCCCCCCAAGGCGTCGAGTTTTTATTTCC
CAGCCTCGCCACCTCAAGAAAAAAAAAAGAGATATCCAAGCATTTCATCA
ACAATGCCGCCCGCTCTGGACATCAAAGAGGCCAAGCAACCCTTGTTATC
GGCCCAGACCGATCAAAGAGGGGCGATCGATGACCAAAGCGGTGAGGCGG
GTACCGTGGACGCTCAAGCGCTGCAAGACAAGCAGCAACCTCCTGCCAAT
CAGCACAGTGAGGAGGCTAATCTGGAGGAGCAGCAAGCCGAGTCCAGACC
TAGACATGACCGTCTTGCTCAAATCAAGCAATATTGTGCCCATGCCTTTT
CTATTCTTCAAGAGCTTCTTGCAATCCCCATCATGGAAGCCTTGGGCACC
TTGACATTGACCCTTGTGGTCGGCCTTATCACCCGCCCCGCCGCCGCTAC
TGCCCCACTAACCGCCGCGTTAGCCATTGCCGCCGTCTTACTGGCGATGA
TTCACGCTGGAGCCCGCATTTCAGGCGCGCATTACAACCCAGCAGTAACA
TTTGCTTTGGTCCTGCTGGGCTGCACATCTCCTTTCCAATTCTTGGTCTA
CGTAGGGAGTCAACTCGCCGGGGCCATCGGCGGCGCCCACCTAGCAAAGG
CTCTCGCTTCTCCAGATCCACTTGCCGACCCGTTTTTGCAGGGGGGCATT
AATGGAAAATTAGCGCTGGTAGAGATATCTTATACCTTTGCTTTGGTCTT
CGTGATCTTACACACGGTGCTCGCCCGCACTCAGCAGCCCAATAGTTTTT
CAGGAGCTGCCATCTGTGCCACGATCGCGGCGGCGGCTGCTGTCGGTGCT
GTCATGAATCCCGCGATATCGACGGGTTTATATGTGGCGGGCATGAGTGA
GGAGCGCGCGGGGGGGAAAGGGGGGGAGGAGGGGCTGTGGATTCGCTGGT
TGCTGCCCATGGTGGGGGCCTTGGTAGCCACATGCCTGTTTTATTTGACA
AATCCCATGGATGCCATGTTCCCGCCAGGCCAGGACGAGGCAGCCGCTGC
CGCTGCAGCAGCAGCAGCAGCAGCAATGTCGTCGCATAGGATCGGAAGAA
GTGGCATGGCAGGAGGAGTCGGAGGGGGAGGTGGGCGGACACCCCTCCTC
CGCGATGGTTCCTCGTTCTCGTCGGTCATCTCTTCATACTCCCATGTGCT
TTTCAAAGTCTCGCGCGTCTTGTCCGTGTATCTGATGGAGTTTCAAGGCA
CCTTCCTCATTACCCTCACCATTATCCTCTCGCTCACTGCTTCCTCCTCC
CCTTCCTCCCTCGCTCCCTCCCCCGCCGCCACTGCCGGCCTGCTCCTTAC
GGGCCTCGTTTTCACCGGAGGGTACATCAGCGGTGCTCATCTTAATCCAG
CCGTGACCTTCGGCGTTTTCCTCTTCCGTCCTCGACGAAGTGACGTGCCC
AAGGTGTTAGCCTACGTGGCTGTCCAAGTGCTCGCCTCTGTTTTCGCAAC
AGGAGCCACTCGCCTCGCCCTCGGCCATGCCGCTTGTCAAACCGCCCTCC
CCTTTCCGCAGGCTCCGCATAAGTGGCAACAAGCCCTGGGGGTCGAGACC
GTGTGTACAGCCCTCCTTGTCCTCGTTGTCCTCCTACTAGGTGCGGCGGG
CGCGCAGGGGCATCCGTACTATGGGCTGGCGATCGGTGCTGCTTTAACGA
GTGGGTTGTATGCTGCAGGGTCTATCTCGGGAGGAGGATTAAATCCTGCG
GTGGCCTCGGGATTGTACGCCCTGAATGCGACGAAGGGACAGGGCGAGGA
GGCGTGGATTTATTGGATTGGGCCTTTATGTGGATCTGTGGTAGGGGTTT
TGTTGGCGGGGTGCTTGGCGCCTCGGGGATGGGCGATGGGAAGAAGGAGG
GCGATGGAGAGGAGGGAGGAGGAGGAGGTGAAAGAAGAGGAGGAAGAAGG
AGACGAGGACGAAGGCAAGGAGGAATGGATGGAGAAGGGGGAGATAACTG
TGACGGAGGAAGAGGAGGGAAAGAAGAAGGAGGAGGAAGTAGCTGCGACG
TAGGCGGAGGATCGTCGCAGTAATTAGGAAGTTATGAATGATAAATATTT
TTGTTTATTTGCGGAGGAGGTCTAGAGATGGATAACGTGT

protein sequence of jgi.p|Nanoce1779_2|374068

>mRNA_10302-protein ID=mRNA_10302-protein|Name=jgi.p|Nanoce1779_2|374068|organism=Nannochloropsis oceanica|type=polypeptide|length=650bp
MPPALDIKEAKQPLLSAQTDQRGAIDDQSGEAGTVDAQALQDKQQPPANQ
HSEEANLEEQQAESRPRHDRLAQIKQYCAHAFSILQELLAIPIMEALGTL
TLTLVVGLITRPAAATAPLTAALAIAAVLLAMIHAGARISGAHYNPAVTF
ALVLLGCTSPFQFLVYVGSQLAGAIGGAHLAKALASPDPLADPFLQGGIN
GKLALVEISYTFALVFVILHTVLARTQQPNSFSGAAICATIAAAAAVGAV
MNPAISTGLYVAGMSEERAGGKGGEEGLWIRWLLPMVGALVATCLFYLTN
PMDAMFPPGQDEAAAAAAAAAAAAMSSHRIGRSGMAGGVGGGGGRTPLLR
DGSSFSSVISSYSHVLFKVSRVLSVYLMEFQGTFLITLTIILSLTASSSP
SSLAPSPAATAGLLLTGLVFTGGYISGAHLNPAVTFGVFLFRPRRSDVPK
VLAYVAVQVLASVFATGATRLALGHAACQTALPFPQAPHKWQQALGVETV
CTALLVLVVLLLGAAGAQGHPYYGLAIGAALTSGLYAAGSISGGGLNPAV
ASGLYALNATKGQGEEAWIYWIGPLCGSVVGVLLAGCLAPRGWAMGRRRA
MERREEEEVKEEEEEGDEDEGKEEWMEKGEITVTEEEEGKKKEEEVAAT*

mRNA from alignment at scaffold_60:23910..26281+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10302 ID=mRNA_10302|Name=jgi.p|Nanoce1779_2|374068|organism=Nannochloropsis oceanica|type=mRNA|length=2372bp|location=Sequence derived from alignment at scaffold_60:23910..26281+ (Nannochloropsis oceanica)
AGGTGAGAGTGCCTATGAACAATGTATTCAGTGTGGCAGTATCCTCGAGA
ATGAGCCTCAGGACACACACAGGTCACATCGACGGGGCTAATAGCAGTCT
TACGGCTGGGCCATGTTCACTTTTTTCGTGGCGGCTGCCGTTGGAACACG
ACGACGTAATTTAGGTATTTAGCCCCCCAAGGTCAGTTCAGACTTGCCTT
GAAGCTTGTCTAACATTATTTACTGTCTTTCTCACTCTCTCTCTGCACCA
TTCCTCCCCACAGGCGTCGAGTTTTTATTTCCCAGCCTCGCCACCTCAAG
AAAAAAAAAAGAGATATCCAAGCATTTCATCAACAATGCCGCCCGCTCTG
GACATCAAAGAGGCCAAGCAACCCTTGTTATCGGCCCAGACCGATCAAAG
AGGGGCGATCGATGACCAAAGCGGTGAGGCGGGTACCGTGGACGCTCAAG
CGCTGCAAGACAAGCAGCAACCTCCTGCCAATCAGCACAGTGAGGAGGCT
AATCTGGAGGAGCAGCAAGCCGAGTCCAGACCTAGACATGACCGTCTTGC
TCAAATCAAGCAATATTGTGCCCATGCCTTTTCTATTCTTCAAGAGCTTC
TTGCAATCCCCATCATGGAAGCCTTGGGCACCTTGACATTGACCCTTGTG
GTCGGCCTTATCACCCGCCCCGCCGCCGCTACTGCCCCACTAACCGCCGC
GTTAGCCATTGCCGCCGTCTTACTGGCGATGATTCACGCTGGAGCCCGCA
TTTCAGGCGCGCATTACAACCCAGCAGTAACATTTGCTTTGGTCCTGCTG
GGCTGCACATCTCCTTTCCAATTCTTGGTCTACGTAGGGAGTCAACTCGC
CGGGGCCATCGGCGGCGCCCACCTAGCAAAGGCTCTCGCTTCTCCAGATC
CACTTGCCGACCCGTTTTTGCAGGGGGGCATTAATGGAAAATTAGCGCTG
GTAGAGATATCTTATACCTTTGCTTTGGTCTTCGTGATCTTACACACGGT
GCTCGCCCGCACTCAGCAGCCCAATAGTTTTTCAGGAGCTGCCATCTGTG
CCACGATCGCGGCGGCGGCTGCTGTCGGTGCTGTCATGAATCCCGCGATA
TCGACGGGTTTATATGTGGCGGGCATGAGTGAGGAGCGCGCGGGGGGGAA
AGGGGGGGAGGAGGGGCTGTGGATTCGCTGGTTGCTGCCCATGGTGGGGG
CCTTGGTAGCCACATGCCTGTTTTATTTGACAAATCCCATGGATGCCATG
TTCCCGCCAGGCCAGGACGAGGCAGCCGCTGCCGCTGCAGCAGCAGCAGC
AGCAGCAATGTCGTCGCATAGGATCGGAAGAAGTGGCATGGCAGGAGGAG
TCGGAGGGGGAGGTGGGCGGACACCCCTCCTCCGCGATGGTTCCTCGTTC
TCGTCGGTCATCTCTTCATACTCCCATGTGCTTTTCAAAGTCTCGCGCGT
CTTGTCCGTGTATCTGATGGAGTTTCAAGGCACCTTCCTCATTACCCTCA
CCATTATCCTCTCGCTCACTGCTTCCTCCTCCCCTTCCTCCCTCGCTCCC
TCCCCCGCCGCCACTGCCGGCCTGCTCCTTACGGGCCTCGTTTTCACCGG
AGGGTACATCAGCGGTGCTCATCTTAATCCAGCCGTGACCTTCGGCGTTT
TCCTCTTCCGTCCTCGACGAAGTGACGTGCCCAAGGTGTTAGCCTACGTG
GCTGTCCAAGTGCTCGCCTCTGTTTTCGCAACAGGAGCCACTCGCCTCGC
CCTCGGCCATGCCGCTTGTCAAACCGCCCTCCCCTTTCCGCAGGCTCCGC
ATAAGTGGCAACAAGCCCTGGGGGTCGAGACCGTGTGTACAGCCCTCCTT
GTCCTCGTTGTCCTCCTACTAGGTGCGGCGGGCGCGCAGGGGCATCCGTA
CTATGGGCTGGCGATCGGTGCTGCTTTAACGAGTGGGTTGTATGCTGCAG
GGTCTATCTCGGGAGGAGGATTAAATCCTGCGGTGGCCTCGGGATTGTAC
GCCCTGAATGCGACGAAGGGACAGGGCGAGGAGGCGTGGATTTATTGGAT
TGGGCCTTTATGTGGATCTGTGGTAGGGGTTTTGTTGGCGGGGTGCTTGG
CGCCTCGGGGATGGGCGATGGGAAGAAGGAGGGCGATGGAGAGGAGGGAG
GAGGAGGAGGTGAAAGAAGAGGAGGAAGAAGGAGACGAGGACGAAGGCAA
GGAGGAATGGATGGAGAAGGGGGAGATAACTGTGACGGAGGAAGAGGAGG
GAAAGAAGAAGGAGGAGGAAGTAGCTGCGACGTAGGCGGAGGATCGTCGC
AGTAATTAGGAAGTTATGAATGATAAATATTTTTGTTTATTTGCGGAGGA
GGTCTAGAGATGGATAACGTGT

Coding sequence (CDS) from alignment at scaffold_60:23910..26281+

>mRNA_10302 ID=mRNA_10302|Name=jgi.p|Nanoce1779_2|374068|organism=Nannochloropsis oceanica|type=CDS|length=1950bp|location=Sequence derived from alignment at scaffold_60:23910..26281+ (Nannochloropsis oceanica)
ATGCCGCCCGCTCTGGACATCAAAGAGGCCAAGCAACCCTTGTTATCGGC
CCAGACCGATCAAAGAGGGGCGATCGATGACCAAAGCGGTGAGGCGGGTA
CCGTGGACGCTCAAGCGCTGCAAGACAAGCAGCAACCTCCTGCCAATCAG
CACAGTGAGGAGGCTAATCTGGAGGAGCAGCAAGCCGAGTCCAGACCTAG
ACATGACCGTCTTGCTCAAATCAAGCAATATTGTGCCCATGCCTTTTCTA
TTCTTCAAGAGCTTCTTGCAATCCCCATCATGGAAGCCTTGGGCACCTTG
ACATTGACCCTTGTGGTCGGCCTTATCACCCGCCCCGCCGCCGCTACTGC
CCCACTAACCGCCGCGTTAGCCATTGCCGCCGTCTTACTGGCGATGATTC
ACGCTGGAGCCCGCATTTCAGGCGCGCATTACAACCCAGCAGTAACATTT
GCTTTGGTCCTGCTGGGCTGCACATCTCCTTTCCAATTCTTGGTCTACGT
AGGGAGTCAACTCGCCGGGGCCATCGGCGGCGCCCACCTAGCAAAGGCTC
TCGCTTCTCCAGATCCACTTGCCGACCCGTTTTTGCAGGGGGGCATTAAT
GGAAAATTAGCGCTGGTAGAGATATCTTATACCTTTGCTTTGGTCTTCGT
GATCTTACACACGGTGCTCGCCCGCACTCAGCAGCCCAATAGTTTTTCAG
GAGCTGCCATCTGTGCCACGATCGCGGCGGCGGCTGCTGTCGGTGCTGTC
ATGAATCCCGCGATATCGACGGGTTTATATGTGGCGGGCATGAGTGAGGA
GCGCGCGGGGGGGAAAGGGGGGGAGGAGGGGCTGTGGATTCGCTGGTTGC
TGCCCATGGTGGGGGCCTTGGTAGCCACATGCCTGTTTTATTTGACAAAT
CCCATGGATGCCATGTTCCCGCCAGGCCAGGACGAGGCAGCCGCTGCCGC
TGCAGCAGCAGCAGCAGCAGCAATGTCGTCGCATAGGATCGGAAGAAGTG
GCATGGCAGGAGGAGTCGGAGGGGGAGGTGGGCGGACACCCCTCCTCCGC
GATGGTTCCTCGTTCTCGTCGGTCATCTCTTCATACTCCCATGTGCTTTT
CAAAGTCTCGCGCGTCTTGTCCGTGTATCTGATGGAGTTTCAAGGCACCT
TCCTCATTACCCTCACCATTATCCTCTCGCTCACTGCTTCCTCCTCCCCT
TCCTCCCTCGCTCCCTCCCCCGCCGCCACTGCCGGCCTGCTCCTTACGGG
CCTCGTTTTCACCGGAGGGTACATCAGCGGTGCTCATCTTAATCCAGCCG
TGACCTTCGGCGTTTTCCTCTTCCGTCCTCGACGAAGTGACGTGCCCAAG
GTGTTAGCCTACGTGGCTGTCCAAGTGCTCGCCTCTGTTTTCGCAACAGG
AGCCACTCGCCTCGCCCTCGGCCATGCCGCTTGTCAAACCGCCCTCCCCT
TTCCGCAGGCTCCGCATAAGTGGCAACAAGCCCTGGGGGTCGAGACCGTG
TGTACAGCCCTCCTTGTCCTCGTTGTCCTCCTACTAGGTGCGGCGGGCGC
GCAGGGGCATCCGTACTATGGGCTGGCGATCGGTGCTGCTTTAACGAGTG
GGTTGTATGCTGCAGGGTCTATCTCGGGAGGAGGATTAAATCCTGCGGTG
GCCTCGGGATTGTACGCCCTGAATGCGACGAAGGGACAGGGCGAGGAGGC
GTGGATTTATTGGATTGGGCCTTTATGTGGATCTGTGGTAGGGGTTTTGT
TGGCGGGGTGCTTGGCGCCTCGGGGATGGGCGATGGGAAGAAGGAGGGCG
ATGGAGAGGAGGGAGGAGGAGGAGGTGAAAGAAGAGGAGGAAGAAGGAGA
CGAGGACGAAGGCAAGGAGGAATGGATGGAGAAGGGGGAGATAACTGTGA
CGGAGGAAGAGGAGGGAAAGAAGAAGGAGGAGGAAGTAGCTGCGACGTAG

Synonyms

Publications