jgi.p|Nanoce1779_2|674876, mRNA_10301 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|674876
Unique Name	mRNA_10301
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1522
Alignment location	scaffold_60:22144..23810 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	674962
Track	FilteredModels2
ProteinId	674876

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_60	supercontig	scaffold_60:22144..23810 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674876	gene_10301	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674876	mRNA_10301-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10301	CDS_10301	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_60:22144..23810+
coding sequence from alignment at scaffold_60:22144..23810+

mRNA sequence

>mRNA_10301 ID=mRNA_10301|Name=jgi.p|Nanoce1779_2|674876|organism=Nannochloropsis oceanica|type=mRNA|length=1522bp
CAGAGACTACCAATGTACGGCCCGCCTTACTATCAACGACGGGGTCGGCC
ACGGGCCCAACAAGGCGGCGGCCGCCGAAACAACGACTTATACCTCATCT
ATGTCCTCATTTCCACCTGCCTTCGCCATGTTAGTGAATTGGATTACAAA
CCGCCCATCACCATTGCCCTGCTGGTCATTAATATTTTGGTGCACATTCT
GCCGGAGCTTTTTCTTCCATGGGGCATCGATTTTCGGAGTGTCCGTGGCA
TCTGCCTGCAGCCCGCCCGGATCCTCGAGGTGCTCCTGCCATCACTATTC
GCCTTCTTTTCCATCTTTGACTCCTCGTCGGGAGGAAGAGGAAGAAGAGG
AAGAGGGAGCAGTTGGGCGCAGCGTTTGTGGGAGGCGGCAACGGGGACCG
CTTTTACTACTTACAGCTCCTCCTCCTCCTCCTCTTCGTGGTGGTCTCCT
TCGGCGTACGACCGGTGGCATGAGGGATTGTCGCGCACCTACCTGTCGGC
GTTGGTCCATGGGGACGATGTCCATCTTTACTACAACATGTTGTCTTTAC
TGTACAAAGGCGTCACGCTGGAACGGGCCCTGGGCTCTCCCCTCTTCCTC
CGCCTCGTCCTCTTCTCCTGGGCAGTCTCGCACACCCTCATCCTCCTCCT
CGCCTCCTTTCTGCACACTCTTCCCTTCATCCCCCCGTCCTTCACCTCCT
TTTACACGTGCTCCGTGGGGTTTTCGGCCGTCCTCTTCTCCCTCAAGTAC
GTTGCCTACTCCCGCGATCCCACGGGCTGGACCTCCGTGGCTGGTTTCCA
GGTCCCCCTCGGGAAGGCCTCGTGGATTGAGTTGGTCGTGACATCTTTCT
TGTCGCCAAATGCGAGTTTTGCGGGCCATTTGTGTGGGATTGTGGCGGGA
GTATTGTGGGTGGAGGGGGGAAAGGTGGATGGATGGGTGAGAGGGAGGAT
GAGGGAGGTAAGGAGGAGGTACACGTATCGGAGTGGGGCGAGTGGTTATC
ACGTGCCCCCGACAGCGCCGTCCCAGCCAGGGATGGGAGGAGGGAGGGCA
GCGGGAAGAGCGGGTAGAAGAGAGGGAGGGCGAGAGGAGGGGAGTTCGGT
GACGCAAGAGGCGACACGACGGGCTTGGGCAGAGCAACAACGACAGCCGG
TGGCTAGTGGGAGACGATCACCAGTAGCAGCGGCAGCAGTGGGAGGGGGC
CCGGAGGGGATGGAAGGGCTGTATCGCCCGCTCTATCCGCACGTGCCTGT
GGCGGAGGTAGTGGATGTTGATGACGGGCCCCGGTTGCCAACCTACGAGG
AGGCCACAAGACTAGGATGGGGAGGAGAAGAATTGCGGCAGCGGACGTCG
CGGGGAAGGGAATTGTAACATGGTTGGAAAAAAGAGGCTAAATTGAACAT
AACTAATTACAGAAGCACACATAATTTGTTTACGTATATGATATCGCTTA
CCTCCACTTTATCTAGTCATTCACGGCTTTCCGTGGCCGGTCAAATCGCT
CCACTCGCAGGCAGTACGCCGC

protein sequence of jgi.p|Nanoce1779_2|674876

>mRNA_10301-protein ID=mRNA_10301-protein|Name=jgi.p|Nanoce1779_2|674876|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp
MYGPPYYQRRGRPRAQQGGGRRNNDLYLIYVLISTCLRHVSELDYKPPIT
IALLVINILVHILPELFLPWGIDFRSVRGICLQPARILEVLLPSLFAFFS
IFDSSSGGRGRRGRGSSWAQRLWEAATGTAFTTYSSSSSSSSWWSPSAYD
RWHEGLSRTYLSALVHGDDVHLYYNMLSLLYKGVTLERALGSPLFLRLVL
FSWAVSHTLILLLASFLHTLPFIPPSFTSFYTCSVGFSAVLFSLKYVAYS
RDPTGWTSVAGFQVPLGKASWIELVVTSFLSPNASFAGHLCGIVAGVLWV
EGGKVDGWVRGRMREVRRRYTYRSGASGYHVPPTAPSQPGMGGGRAAGRA
GRREGGREEGSSVTQEATRRAWAEQQRQPVASGRRSPVAAAAVGGGPEGM
EGLYRPLYPHVPVAEVVDVDDGPRLPTYEEATRLGWGGEELRQRTSRGRE
L*

mRNA from alignment at scaffold_60:22144..23810+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10301 ID=mRNA_10301|Name=jgi.p|Nanoce1779_2|674876|organism=Nannochloropsis oceanica|type=mRNA|length=1667bp|location=Sequence derived from alignment at scaffold_60:22144..23810+ (Nannochloropsis oceanica)
CAGAGACTACCAATGTACGGCCCGCCTTACTATCAACGACGGGGTCGGCC
ACGGGCCCAACAAGGCGGCGGCCGCCGAAACAACGACTTATACCTCATCT
ATGTCCTCATTTCCACCTGCCTTCGCCATGTTAGTGAATTGGATTACAAA
CCGCCCATCACCATTGCCCTGCTGGTCATTAATATTTTGGTGCACATTCT
GCCGGAGCTTTTTCTTCCATGGGGCATCGATTTTCGGAGTGTCCGTGGCA
TCTGCCTGCAGCCCGCCCGGATCCTCGAGGTGCTCCTGCCATCACTATTC
GCCTTCTTTTCCATCTTTGACTCCTCGTCGGGAGGAAGAGGAAGAAGAGG
AAGAGGGAGCAGTTGGGCGCAGCGTTTGTGGGAGGCGGCAACGGGGACCG
CTTTTACTACTTACAGCTCCTCCTCCTCCTCCTCTTCGTGGTGGTCTCCT
TCGGCGTACGACCGGTGGCATGAGGGATTGTCGCGCACCTACCTGTCGGC
GTTGGTCCATGGGGACGATGTCCATCTTTACTGTACGTCCTTCTTGGTTT
CTCCTCCCTGGATGCCTCCCTCGCTCCCGTCCTTCCTCCCTTGATCTTTC
CAATTTCCTTTTTTTTTCCCTCGCAGAGCATCAGAGCACTTAATAATTGG
ATTTATCACACACTTTTCTCCAAACAGACAACATGTTGTCTTTACTGTAC
AAAGGCGTCACGCTGGAACGGGCCCTGGGCTCTCCCCTCTTCCTCCGCCT
CGTCCTCTTCTCCTGGGCAGTCTCGCACACCCTCATCCTCCTCCTCGCCT
CCTTTCTGCACACTCTTCCCTTCATCCCCCCGTCCTTCACCTCCTTTTAC
ACGTGCTCCGTGGGGTTTTCGGCCGTCCTCTTCTCCCTCAAGTACGTTGC
CTACTCCCGCGATCCCACGGGCTGGACCTCCGTGGCTGGTTTCCAGGTCC
CCCTCGGGAAGGCCTCGTGGATTGAGTTGGTCGTGACATCTTTCTTGTCG
CCAAATGCGAGTTTTGCGGGCCATTTGTGTGGGATTGTGGCGGGAGTATT
GTGGGTGGAGGGGGGAAAGGTGGATGGATGGGTGAGAGGGAGGATGAGGG
AGGTAAGGAGGAGGTACACGTATCGGAGTGGGGCGAGTGGTTATCACGTG
CCCCCGACAGCGCCGTCCCAGCCAGGGATGGGAGGAGGGAGGGCAGCGGG
AAGAGCGGGTAGAAGAGAGGGAGGGCGAGAGGAGGGGAGTTCGGTGACGC
AAGAGGCGACACGACGGGCTTGGGCAGAGCAACAACGACAGCCGGTGGCT
AGTGGGAGACGATCACCAGTAGCAGCGGCAGCAGTGGGAGGGGGCCCGGA
GGGGATGGAAGGGCTGTATCGCCCGCTCTATCCGCACGTGCCTGTGGCGG
AGGTAGTGGATGTTGATGACGGGCCCCGGTTGCCAACCTACGAGGAGGCC
ACAAGACTAGGATGGGGAGGAGAAGAATTGCGGCAGCGGACGTCGCGGGG
AAGGGAATTGTAACATGGTTGGAAAAAAGAGGCTAAATTGAACATAACTA
ATTACAGAAGCACACATAATTTGTTTACGTATATGATATCGCTTACCTCC
ACTTTATCTAGTCATTCACGGCTTTCCGTGGCCGGTCAAATCGCTCCACT
CGCAGGCAGTACGCCGC

Coding sequence (CDS) from alignment at scaffold_60:22144..23810+

>mRNA_10301 ID=mRNA_10301|Name=jgi.p|Nanoce1779_2|674876|organism=Nannochloropsis oceanica|type=CDS|length=2712bp|location=Sequence derived from alignment at scaffold_60:22144..23810+ (Nannochloropsis oceanica)
ATGTACGGCCCGCCTTACTATCAACGACGGGGTCGGCCACGGGCCCAACA
AGGCGGCGGCCGCCGAAACAACGACTTATACCTCATCTATGTCCTCATTT
CCACCTGCCTTCGCCATGTTAGTGAATTGGATTACAAACCGCCCATCACC
ATTGCCCTGCTGGTCATTAATATTTTGGTGCACATTCTGCCGGAGCTTTT
TCTTCCATGGGGCATCGATTTTCGGAGTGTCCGTGGCATCTGCCTGCAGC
CCGCCCGGATCCTCGAGGTGCTCCTGCCATCACTATTCGCCTTCTTTTCC
ATCTTTGACTCCTCGTCGGGAGGAAGAGGAAGAAGAGGAAGAGGGAGCAG
TTGGGCGCAGCGTTTGTGGGAGGCGGCAACGGGGACCGCTTTTACTACTT
ACAGCTCCTCCTCCTCCTCCTCTTCGTGGTGGTCTCCTTCGGCGTACGAC
CGGTGGCATGAGGGATTGTCGCGCACCTACCTGTCGGCGTTGGTCCATGG
GGACGATGTCCATCTTTACTACAACATGTTGTCTTTACTGTACAAAGGCG
TCACGCTGGAACGGGCCCTGGGCTCTCCCCTCTTCCTCCGCCTCGTCCTC
TTCTCCTGGGCAGTCTCGCACACCCTCATCCTCCTCCTCGCCTCCTTTCT
GCACACTCTTCCCTTCATCCCCCCGTCCTTCACCTCCTTTTACACGTGCT
CCGTGGGGTTTTCGGCCGTCCTCTTCTCCCTCAAGTACGTTGCCTACTCC
CGCGATCCCACGGGCTGGACCTCCGTGGCTGGTTTCCAGGTCCCCCTCGG
GAAGGCCTCGTGGATTGAGTTGGTCGTGACATCTTTCTTGTCGCCAAATG
CGAGTTTTGCGGGCCATTTGTGTGGGATTGTGGCGGGAGTATTGTGGGTG
GAGGGGGGAAAGGTGGATGGATGGGTGAGAGGGAGGATGAGGGAGGTAAG
GAGGAGGTACACGTATCGGAGTGGGGCGAGTGGTTATCACGTGCCCCCGA
CAGCGCCGTCCCAGCCAGGGATGGGAGGAGGGAGGGCAGCGGGAAGAGCG
GGTAGAAGAGAGGGAGGGCGAGAGGAGGGGAGTTCGGTGACGCAAGAGGC
GACACGACGGGCTTGGGCAGAGCAACAACGACAGCCGGTGGCTAGTGGGA
GACGATCACCAGTAGCAGCGGCAGCAGTGGGAGGGGGCCCGGAGGGGATG
GAAGGGCTGTATCGCCCGCTCTATCCGCACGTGCCTGTGGCGGAGGTAGT
GGATGTTGATGACGGGCCCCGGTTGCCAACCTACGAGGAGGCCACAAGAC
TAGGATGGGGAGGAGAAGAATTGCGGCAGCGGACGTCGCGGGGAAGGGAA
TTGTAAATGTACGGCCCGCCTTACTATCAACGACGGGGTCGGCCACGGGC
CCAACAAGGCGGCGGCCGCCGAAACAACGACTTATACCTCATCTATGTCC
TCATTTCCACCTGCCTTCGCCATGTTAGTGAATTGGATTACAAACCGCCC
ATCACCATTGCCCTGCTGGTCATTAATATTTTGGTGCACATTCTGCCGGA
GCTTTTTCTTCCATGGGGCATCGATTTTCGGAGTGTCCGTGGCATCTGCC
TGCAGCCCGCCCGGATCCTCGAGGTGCTCCTGCCATCACTATTCGCCTTC
TTTTCCATCTTTGACTCCTCGTCGGGAGGAAGAGGAAGAAGAGGAAGAGG
GAGCAGTTGGGCGCAGCGTTTGTGGGAGGCGGCAACGGGGACCGCTTTTA
CTACTTACAGCTCCTCCTCCTCCTCCTCTTCGTGGTGGTCTCCTTCGGCG
TACGACCGGTGGCATGAGGGATTGTCGCGCACCTACCTGTCGGCGTTGGT
CCATGGGGACGATGTCCATCTTTACTACAACATGTTGTCTTTACTGTACA
AAGGCGTCACGCTGGAACGGGCCCTGGGCTCTCCCCTCTTCCTCCGCCTC
GTCCTCTTCTCCTGGGCAGTCTCGCACACCCTCATCCTCCTCCTCGCCTC
CTTTCTGCACACTCTTCCCTTCATCCCCCCGTCCTTCACCTCCTTTTACA
CGTGCTCCGTGGGGTTTTCGGCCGTCCTCTTCTCCCTCAAGTACGTTGCC
TACTCCCGCGATCCCACGGGCTGGACCTCCGTGGCTGGTTTCCAGGTCCC
CCTCGGGAAGGCCTCGTGGATTGAGTTGGTCGTGACATCTTTCTTGTCGC
CAAATGCGAGTTTTGCGGGCCATTTGTGTGGGATTGTGGCGGGAGTATTG
TGGGTGGAGGGGGGAAAGGTGGATGGATGGGTGAGAGGGAGGATGAGGGA
GGTAAGGAGGAGGTACACGTATCGGAGTGGGGCGAGTGGTTATCACGTGC
CCCCGACAGCGCCGTCCCAGCCAGGGATGGGAGGAGGGAGGGCAGCGGGA
AGAGCGGGTAGAAGAGAGGGAGGGCGAGAGGAGGGGAGTTCGGTGACGCA
AGAGGCGACACGACGGGCTTGGGCAGAGCAACAACGACAGCCGGTGGCTA
GTGGGAGACGATCACCAGTAGCAGCGGCAGCAGTGGGAGGGGGCCCGGAG
GGGATGGAAGGGCTGTATCGCCCGCTCTATCCGCACGTGCCTGTGGCGGA
GGTAGTGGATGTTGATGACGGGCCCCGGTTGCCAACCTACGAGGAGGCCA
CAAGACTAGGATGGGGAGGAGAAGAATTGCGGCAGCGGACGTCGCGGGGA
AGGGAATTGTAA

Synonyms

Publications