jgi.p|Nanoce1779_2|611893, mRNA_10300 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611893
Unique NamemRNA_10300
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length647
Alignment locationscaffold_60:19463..21165 -

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Properties
Property NameValue
TranscriptId611979
TrackFilteredModels2
ProteinId611893
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:19463..21165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611893gene_10300Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611893mRNA_10300-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10300CDS_10300Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10300 ID=mRNA_10300|Name=jgi.p|Nanoce1779_2|611893|organism=Nannochloropsis oceanica|type=mRNA|length=647bp
AACAGGGGTCCAGTCTCGTGTAGTTTTCTCTTTCAGGTTCCAAGATGGTG
AACCTCCGCATTCAGAAGCGCCTGGCCGCCAGCGTGCTCAAGACGGGTAA
GCGCAAGGTCTGGCTTGATCCCAATGAGACGGGCGAGATCTCCATGGCCA
ACTCCAGGCAGAACATCCGCAAGTTGATTAAGGACGGCTTTGTTATCAAG
AAGCCTCAGGTTGTCCACTCTCGCTCCCGTTTCCAGGCCCGCCTCGAGGC
CAAGCGCAAGGGCCGACACACTGGTTACGGGAAGCGTAAGGGTACCGCCA
ATGCCCGCCTCCCCTTCAAGATGGTCTGGCTCCGACGCATGCGTGTCCTC
CGCCGCCTCCTCCGCAAGTACCGCGACGCGAAGAAGGTCGACAAGCACCT
CTACCACGACCTATACATGCGCGTGAAGGGCAATCAGTTTAAGAACAAGC
GTGTGCTAATGGAGTCGATCCACAAGCTCAAGGCGGAAAAAGCCCGTGTT
ACAATGCTGGCCGCTCAGTCCGAGGCGCGTCGGGCCAAGGCCAAGAACAA
GACCGAGCGCAAGGAGAAGCGGAGGCTGGAGGCAGCTGGCTTGGCAGAGA
AGGAGGAAGAGAAGTAAGCATGTGGTCAGGGAAAGAGAAGCGGGGAG
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protein sequence of jgi.p|Nanoce1779_2|611893

>mRNA_10300-protein ID=mRNA_10300-protein|Name=jgi.p|Nanoce1779_2|611893|organism=Nannochloropsis oceanica|type=polypeptide|length=191bp
MVNLRIQKRLAASVLKTGKRKVWLDPNETGEISMANSRQNIRKLIKDGFV
IKKPQVVHSRSRFQARLEAKRKGRHTGYGKRKGTANARLPFKMVWLRRMR
VLRRLLRKYRDAKKVDKHLYHDLYMRVKGNQFKNKRVLMESIHKLKAEKA
RVTMLAAQSEARRAKAKNKTERKEKRRLEAAGLAEKEEEK*
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mRNA from alignment at scaffold_60:19463..21165-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10300 ID=mRNA_10300|Name=jgi.p|Nanoce1779_2|611893|organism=Nannochloropsis oceanica|type=mRNA|length=1703bp|location=Sequence derived from alignment at scaffold_60:19463..21165- (Nannochloropsis oceanica)
AACAGGGGTCCAGTCTCGTGTAGTTTTCTCTTTCAGGTTCCAAGATGGTG
AACCTCCGCATTCAGAAGCGCCTGGCCGCCAGCGTGCTCAAGACGGGTAA
GCGCAAGGTCTGGCTTGATCCCAATGAGACGGGCGAGATCTCCATGGCCA
ACTCCAGGCAGAACATCCGCAAGGTAACGACAGAGAGGAGGGAGGGCTGC
GAAGAAATGAAATGGAATGGCATTAGTGCGGAGCGTGGGTACATCGGAGG
AGGGATGACTGGTTGGCATCCTGGCTATTAGTATGGGTGGAATCGAAGGG
AGCTCTGCATCGTCACTGTACACCCACTGCGTCTCGTTCTCATCATGATT
CACTCTCACATGCCTTTCTGCTCTCCCTCCCCTTTCAATATCATCAACAC
CTATCCTCGACACGTACAGTTGATTAAGGACGGCTTTGTTATCAAGAAGC
CTCAGGTTGTCCACTCTCGCTCCCGTTTCCAGGCCCGCCTCGAGGCCAAG
CGCAAGGGCCGACACACTGGTGGGTGGACAGGCAGTGATAGAGGGGGGAG
TAGACAGTAGAAGTGTATTTGTGTATGTGTGTGTGTGTGGTGATGGAATC
AACCACCGGCAGTGGGAGGGGCTTCTCTCTTCCTTTTATTCTTTTCCTTT
CTGGGGGAGGATGAAGAGCGGGAGAGGCCGCCCCCTCTTCCTCTTCTTCG
CAAGGGGATGAGGAGGAGGAGTGAGCCCTGCCAAGAAAAGACACGAAAAG
GAGGCTCTCCACAGGGCGTGGTGGCTTTTTGTAAAGACGCTCACCGCCAC
GCTCTACTATCACTTGCCACTACATCTTCGGTCCCTCCCTCCCTCCATCC
CTCCCTCCCAACCCAGCGTGTAGTCCTTCCCTGTCGATCGGCCGCCTTTG
TATGTGGCTCTAGTCAGCCCTCCCGTCTCAGCCCTTCATCGACTCACTCA
CCTCTTCCCTTTTATTTCCATTCCATTCTCGCACAGGTTACGGGAAGCGT
AAGGGTACCGCCAATGCCCGCCTCCCCTTCAAGATGGTCTGGCTCCGACG
CATGCGTGTCCTCCGCCGCCTCCTCCGCAAGTACCGCGACGCGAAGAAGG
TCGACAAGCACCTCTACCACGACCTATACATGCGGTACGTGTTGCCTCAC
CCACACCCTTCCTACCCGTCTCCCTCGTTCCCTCCATTCTCATAGGTGTC
TTTGGTTTGAGACGTATATAATGCACCTGTCCTCCACGTCTGACCCTCTT
CCCCTCCCTCCCTCTCCTCCGCGCTCCCCATGCTCTTGCCAGCGTGAAGG
GCAATCAGTTTAAGAACAAGCGTGTGCTAATGGAGTCGATCCACAAGCTC
AAGGCGGAAAAAGCCCGTGTTACAATGCTGGCCGCTCAGTCCGAGGCGCG
TCGGGCCAAGGTAGGGACGAAGGGAAGGAGAGAGGGACGGAGGAAGGGAT
GCATCAACAGAAGGGAAGTTAGCTACACCCAGGAGCTGTTGGATGAAGGG
ATTTATGTATTGGTACGGTTTGGCGCTCACCGCCACTTACTTCCCCTTCC
CTTCCTCATTTTGTCCTCCCTCTCCCCCCCCCCAACCCTCCGCAGGCCAA
GAACAAGACCGAGCGCAAGGAGAAGCGGAGGCTGGAGGCAGCTGGCTTGG
CAGAGAAGGAGGAAGAGAAGTAAGCATGTGGTCAGGGAAAGAGAAGCGGG
GAG
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Coding sequence (CDS) from alignment at scaffold_60:19463..21165-

>mRNA_10300 ID=mRNA_10300|Name=jgi.p|Nanoce1779_2|611893|organism=Nannochloropsis oceanica|type=CDS|length=2865bp|location=Sequence derived from alignment at scaffold_60:19463..21165- (Nannochloropsis oceanica)
GCCAAGAACAAGACCGAGCGCAAGGAGAAGCGGAGGCTGGAGGCAGCTGG
CTTGGCAGAGAAGGAGGAAGAGAAGTAACGTGAAGGGCAATCAGTTTAAG
AACAAGCGTGTGCTAATGGAGTCGATCCACAAGCTCAAGGCGGAAAAAGC
CCGTGTTACAATGCTGGCCGCTCAGTCCGAGGCGCGTCGGGCCAAGGTTA
CGGGAAGCGTAAGGGTACCGCCAATGCCCGCCTCCCCTTCAAGATGGTCT
GGCTCCGACGCATGCGTGTCCTCCGCCGCCTCCTCCGCAAGTACCGCGAC
GCGAAGAAGGTCGACAAGCACCTCTACCACGACCTATACATGCGTTGATT
AAGGACGGCTTTGTTATCAAGAAGCCTCAGGTTGTCCACTCTCGCTCCCG
TTTCCAGGCCCGCCTCGAGGCCAAGCGCAAGGGCCGACACACTGATGGTG
AACCTCCGCATTCAGAAGCGCCTGGCCGCCAGCGTGCTCAAGACGGGTAA
GCGCAAGGTCTGGCTTGATCCCAATGAGACGGGCGAGATCTCCATGGCCA
ACTCCAGGCAGAACATCCGCAAGGCCAAGAACAAGACCGAGCGCAAGGAG
AAGCGGAGGCTGGAGGCAGCTGGCTTGGCAGAGAAGGAGGAAGAGAAGTA
ACGTGAAGGGCAATCAGTTTAAGAACAAGCGTGTGCTAATGGAGTCGATC
CACAAGCTCAAGGCGGAAAAAGCCCGTGTTACAATGCTGGCCGCTCAGTC
CGAGGCGCGTCGGGCCAAGGTTACGGGAAGCGTAAGGGTACCGCCAATGC
CCGCCTCCCCTTCAAGATGGTCTGGCTCCGACGCATGCGTGTCCTCCGCC
GCCTCCTCCGCAAGTACCGCGACGCGAAGAAGGTCGACAAGCACCTCTAC
CACGACCTATACATGCGTTGATTAAGGACGGCTTTGTTATCAAGAAGCCT
CAGGTTGTCCACTCTCGCTCCCGTTTCCAGGCCCGCCTCGAGGCCAAGCG
CAAGGGCCGACACACTGATGGTGAACCTCCGCATTCAGAAGCGCCTGGCC
GCCAGCGTGCTCAAGACGGGTAAGCGCAAGGTCTGGCTTGATCCCAATGA
GACGGGCGAGATCTCCATGGCCAACTCCAGGCAGAACATCCGCAAGGCCA
AGAACAAGACCGAGCGCAAGGAGAAGCGGAGGCTGGAGGCAGCTGGCTTG
GCAGAGAAGGAGGAAGAGAAGTAACGTGAAGGGCAATCAGTTTAAGAACA
AGCGTGTGCTAATGGAGTCGATCCACAAGCTCAAGGCGGAAAAAGCCCGT
GTTACAATGCTGGCCGCTCAGTCCGAGGCGCGTCGGGCCAAGGTTACGGG
AAGCGTAAGGGTACCGCCAATGCCCGCCTCCCCTTCAAGATGGTCTGGCT
CCGACGCATGCGTGTCCTCCGCCGCCTCCTCCGCAAGTACCGCGACGCGA
AGAAGGTCGACAAGCACCTCTACCACGACCTATACATGCGTTGATTAAGG
ACGGCTTTGTTATCAAGAAGCCTCAGGTTGTCCACTCTCGCTCCCGTTTC
CAGGCCCGCCTCGAGGCCAAGCGCAAGGGCCGACACACTGATGGTGAACC
TCCGCATTCAGAAGCGCCTGGCCGCCAGCGTGCTCAAGACGGGTAAGCGC
AAGGTCTGGCTTGATCCCAATGAGACGGGCGAGATCTCCATGGCCAACTC
CAGGCAGAACATCCGCAAGGCCAAGAACAAGACCGAGCGCAAGGAGAAGC
GGAGGCTGGAGGCAGCTGGCTTGGCAGAGAAGGAGGAAGAGAAGTAACGT
GAAGGGCAATCAGTTTAAGAACAAGCGTGTGCTAATGGAGTCGATCCACA
AGCTCAAGGCGGAAAAAGCCCGTGTTACAATGCTGGCCGCTCAGTCCGAG
GCGCGTCGGGCCAAGGTTACGGGAAGCGTAAGGGTACCGCCAATGCCCGC
CTCCCCTTCAAGATGGTCTGGCTCCGACGCATGCGTGTCCTCCGCCGCCT
CCTCCGCAAGTACCGCGACGCGAAGAAGGTCGACAAGCACCTCTACCACG
ACCTATACATGCGTTGATTAAGGACGGCTTTGTTATCAAGAAGCCTCAGG
TTGTCCACTCTCGCTCCCGTTTCCAGGCCCGCCTCGAGGCCAAGCGCAAG
GGCCGACACACTGATGGTGAACCTCCGCATTCAGAAGCGCCTGGCCGCCA
GCGTGCTCAAGACGGGTAAGCGCAAGGTCTGGCTTGATCCCAATGAGACG
GGCGAGATCTCCATGGCCAACTCCAGGCAGAACATCCGCAAGGCCAAGAA
CAAGACCGAGCGCAAGGAGAAGCGGAGGCTGGAGGCAGCTGGCTTGGCAG
AGAAGGAGGAAGAGAAGTAACGTGAAGGGCAATCAGTTTAAGAACAAGCG
TGTGCTAATGGAGTCGATCCACAAGCTCAAGGCGGAAAAAGCCCGTGTTA
CAATGCTGGCCGCTCAGTCCGAGGCGCGTCGGGCCAAGGTTACGGGAAGC
GTAAGGGTACCGCCAATGCCCGCCTCCCCTTCAAGATGGTCTGGCTCCGA
CGCATGCGTGTCCTCCGCCGCCTCCTCCGCAAGTACCGCGACGCGAAGAA
GGTCGACAAGCACCTCTACCACGACCTATACATGCGTTGATTAAGGACGG
CTTTGTTATCAAGAAGCCTCAGGTTGTCCACTCTCGCTCCCGTTTCCAGG
CCCGCCTCGAGGCCAAGCGCAAGGGCCGACACACTGATGGTGAACCTCCG
CATTCAGAAGCGCCTGGCCGCCAGCGTGCTCAAGACGGGTAAGCGCAAGG
TCTGGCTTGATCCCAATGAGACGGGCGAGATCTCCATGGCCAACTCCAGG
CAGAACATCCGCAAG
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Synonyms
Publications