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Properties
| Property Name | Value |
|---|
| TranscriptId | 575160 |
| Track | FilteredModels2 |
| ProteinId | 575074 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:1050600..1052937 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1030 ID=mRNA_1030|Name=jgi.p|Nanoce1779_2|575074|organism=Nannochloropsis oceanica|type=mRNA|length=1730bp
ACAGAGCACCATCATGGCTTCAGCCTCCCCACCCCATGCCGCCTCACCCA
CCGGACCCGAGGCACCACCATCGACAGATAAAGGCAACGATAAGCACTCC
ATCATTTTGCAGGGTGGCCTAGGGACCCGCTTGACCCACCTGTCCCGCCC
CTCTGGTCACTGCTTCGTCAATCCACCAGTGCAGCGAGGTTCGACTGTGC
TCTTTCCCACGGTCAAGGAACGGAATGCTTCATGGTTTGAGCGCAAGCGC
TTCGAGCAAGCCTTGACGTACGGCATCAATGGCAGTGAGACCCACCACAT
GCTCGAAGATATGGTCGCCAACATTGAAGGCGGCACCCGCTCTCAAATTA
CCAGCTCGGGGCTCTCCGCCTGTACGATCGCCCTTCTTGCCTACACCAAA
GCAGGAGACCATGTCTTGCTCCCGGATTCTATCTACGGCCCCGTCCGTGG
GTTTGCAGAAGGCATGCTCCGACGCTTTCATGTCGACGTGGAATATTACC
ATGCCTCCGCAACTGGGACAGACGTGGCTGCGTTGTTGAAAGAGAATACA
ACGGTCGTGTATATTGAGAGCCCTGGCTCGCATACCTTCGAGGTGGTGGA
TGTGAAGGCAATTGCGAGTGTCGCGAGGAATCATGGAGCCAAGAGCATTT
TGGATAATACGTATGGAATTCATTTTTTTCGACCATTTGAGAAGGGGAAT
GTGGACATCAGCGTTCAGGCACTCACCAAATACGTCGTGGGTCATTCTGA
TGCCCTCCTCGGTGCCATCACCGTCAACACCAGGGAGAATTGGGAGCAGG
TACGACAATGTGTCCTCGAGCTCGGGGAGGCTGTCTCACCCGACGATTGC
TGGTTGGCCATTCGTGGTGCGCGAACACTAGGAGTCAGGCTGAAGTACCA
GATGGAAGCAGGATTGGAGGTGGCCCGGTACCTGTCGGAGGCCTTCCCTC
AAGACGTCGTTACTGTCCTCCACCCCGCGTTCCCCTCCTGTCCCGGCCAT
GACTTCTACCTCAGAGACTACACGGGGTGCTGCTCCTTGTTTTCCGTCGT
CTTCCACCCCATGTACAGTGAAGAGGCCATGCATGCCATGTTGGATTCCT
ACCAGCTGTTTGCAATCGGGGCGAGTTGGGGTGGCTTTGAGAGCTTGGTG
TTGCCGACGACCAATACGATCACTCGGTCGATTGAACCGGCGTTTCCTTC
GCTGGTGGGGCCAACGGCAAGGTTTCATGTAGGGTTGGAGGAGGTGGAGG
ACTTGAAGGCGGACCTGAGGAGAGGAATCGATGTGTTAAAGGCGTTTGAT
AATGGCGGGAAGTAGAGGGGGAGGAGTGGAGATGAACAGCGAGAGGACTT
CAAAAACCGATATCTACCCTCAGAAGATTCTGAGAGGAGTCCCTCGGACA
TGGGTGAAATGAACGGAATGATATGAAAATATTGCAGATCCAATGAAATT
GTGTCGAGTGGTTCTTGTGCATTCAAGGGAAACAAATTGTACAGACAAGC
ACATAGCACAAAGGATCATGTCGTCAGCACCGTCCACCCCCGAAGCGCCC
TCCACCATCTATCACCTTGCGCGAAAACAAGAATGGGAGAAGGCCGTGGC
GGAAGAACGCGATTACTTCACCGACTCCCTTGAAAAGGAAGGCTTCACGC
ACGCGACAGCTGAGACCAAGCTCATTCTCACAATTGCTAACGCCTTCTAT
CAAAGCGCGCCGGGAGACTTTGTGCTCCTA back to topprotein sequence of jgi.p|Nanoce1779_2|575074 >mRNA_1030-protein ID=mRNA_1030-protein|Name=jgi.p|Nanoce1779_2|575074|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MASASPPHAASPTGPEAPPSTDKGNDKHSIILQGGLGTRLTHLSRPSGHC
FVNPPVQRGSTVLFPTVKERNASWFERKRFEQALTYGINGSETHHMLEDM
VANIEGGTRSQITSSGLSACTIALLAYTKAGDHVLLPDSIYGPVRGFAEG
MLRRFHVDVEYYHASATGTDVAALLKENTTVVYIESPGSHTFEVVDVKAI
ASVARNHGAKSILDNTYGIHFFRPFEKGNVDISVQALTKYVVGHSDALLG
AITVNTRENWEQVRQCVLELGEAVSPDDCWLAIRGARTLGVRLKYQMEAG
LEVARYLSEAFPQDVVTVLHPAFPSCPGHDFYLRDYTGCCSLFSVVFHPM
YSEEAMHAMLDSYQLFAIGASWGGFESLVLPTTNTITRSIEPAFPSLVGP
TARFHVGLEEVEDLKADLRRGIDVLKAFDNGGK* back to topmRNA from alignment at scaffold_2:1050600..1052937- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1030 ID=mRNA_1030|Name=jgi.p|Nanoce1779_2|575074|organism=Nannochloropsis oceanica|type=mRNA|length=2338bp|location=Sequence derived from alignment at scaffold_2:1050600..1052937- (Nannochloropsis oceanica)
ACAGAGCACCATCATGGCTTCAGCCTCCCCACCCCATGCCGCCTCACCCA
CCGGACCCGAGGCACCACCATCGACAGATAAAGGCAACGATAAGCACTCC
ATCATTTTGCAGGGTGGCCTAGGGACCCGCTTGACCCACCTGTCCCGCCC
CTCTGGTCACTGCTTCGTCAATCCACCAGTGCAGCGAGGTTCGACTGTGC
TCTTTCCCACGGTCAAGGAACGGAATGCTTCATGGTTTGAGCGCAAGCGC
TTCGAGCAAGCCTTGACGTACGGCATCAATGGCAGTGAGGTATGCTTTAA
AACTGGCAATTACAGAATCGACTCCATTTGCAGGGCACTCCTCTCTATGT
CAACCGTTTTGCCTGCCTCTTTCGCTTCTCCCCCCGCCGGTCCCTCACCT
CCCTCCCACCCCATACAGACCCACCACATGCTCGAAGATATGGTCGCCAA
CATTGAAGGCGGCACCCGCTCTCAAATTACCAGCTCGGGGCTCTCCGCCT
GTACGATCGCCCTTCTTGCCTACACCAAAGCAGGAGACCATGTCTTGCTC
CCGGATTCTATCTACGGCCCCGTCCGTGGGTTTGCAGAAGGCATGCTCCG
ACGCTTTCATGTCGACGTGGAATATTACCATGCCTCCGCAACTGGGACAG
ACGTGGCTGCGTTGTTGAAAGAGAATACAACGGTCGTGTATATTGAGAGC
CCTGGCTCGCATACCTTCGAGGTGGTGGATGTGAAGGCAATTGCGAGTGT
CGCGAGGAATCATGGAGCCAAGAGCATTTTGGATAATACGTATGGAATTC
ATTTTTTTCGACCATTTGAGAAGGGGAATGTGGACATCAGCGTTCAGGTA
TGCTCAACCTTAGAAAAAGGAAAGAGAGTGGCAGTGCTGCTTGGAAAGGA
AAGTTTTAGACAATATATTGTCATTACCCCTCTGATCCCACCTCAATCAC
TTTTCCTCCTTCCATCCCTCCCTCCCTTCCTCCTTCTGCCTACAAAGGCA
CTCACCAAATACGTCGTGGGTCATTCTGATGCCCTCCTCGGTGCCATCAC
CGTCAACACCAGGGAGAATTGGGAGCAGGTACGACAATGTGTCCTCGAGC
TCGGGGAGGCTGTCTCACCCGACGATTGCTGGTTGGCCATTCGTGGTGCG
CGAACACTAGGAGTCAGGCTGAAGTACCAGATGGAAGCAGGATTGGAGGT
GGCCCGGTGGGTAGGGAGGGAGAAGTGGAGGAGGGAGGGATGACAAGTGG
GAAGCGATCGGAAGGTGAGGAGACAGTCAAAGACACACACTAACCGACAC
TCTATTTCCAAAATCTGCACATTTTCCCAAACCAACACAAAGGTACCTGT
CGGAGGCCTTCCCTCAAGACGTCGTTACTGTCCTCCACCCCGCGTTCCCC
TCCTGTCCCGGCCATGACTTCTACCTCAGAGACTACACGGGGTGCTGCTC
CTTGTTTTCCGTCGTCTTCCACCCCATGTACAGTGAAGAGGCCATGCATG
CCATGTTGGATTCCTACCAGCTGTTTGCAATCGGGGCGAGTTGGGGTGGC
TTTGAGAGCTTGGTGTTGCCGACGACCAATACGATCACTCGGTCGATTGA
ACCGGCGTTTCCTTCGCTGGTGGGGCCAACGGCAAGGTTTCATGTAGGGT
TGGAGGAGGTGGAGGACTTGAAGGCGGACCTGAGGAGAGGAATCGATGTG
TTAAAGGCGTTTGATAATGGCGGGAAGTAGAGGGGGAGGAGTGGAGATGA
ACAGCGAGAGGACTTCAAAAACCGATATCTACCCTCAGAAGATTCTGAGA
GGAGTCCCTCGGACATGGGTGAAATGAACGGAATGATATGAAAATATTGC
AGATCCAATGAAATTGTGTCGAGTGGTTCTTGTGCATTCAAGGGAAACAA
ATTGTACAGGCACGTCTGGCGGGGCGACTACGGCAGGGCGATCCGGTCTT
GCCGCCGCCTGGGCTGCATGCACAACCAATCGTGTGGGGCCACGTTATCT
ACCAGGCGGGCTATTACTTTCGATTCAAACATACTTTTCACCTTCTTGTT
TCTCATGCTTTTCCTTCCAACATACACCGACCCCCCCCCTTATCTCCCCC
AGACAAGCACATAGCACAAAGGATCATGTCGTCAGCACCGTCCACCCCCG
AAGCGCCCTCCACCATCTATCACCTTGCGCGAAAACAAGAATGGGAGAAG
GCCGTGGCGGAAGAACGCGATTACTTCACCGACTCCCTTGAAAAGGAAGG
CTTCACGCACGCGACAGCTGAGACCAAGCTCATTCTCACAATTGCTAACG
CCTTCTATCAAAGCGCGCCGGGAGACTTTGTGCTCCTA back to topCoding sequence (CDS) from alignment at scaffold_2:1050600..1052937- >mRNA_1030 ID=mRNA_1030|Name=jgi.p|Nanoce1779_2|575074|organism=Nannochloropsis oceanica|type=CDS|length=5208bp|location=Sequence derived from alignment at scaffold_2:1050600..1052937- (Nannochloropsis oceanica)
GTACCTGTCGGAGGCCTTCCCTCAAGACGTCGTTACTGTCCTCCACCCCG
CGTTCCCCTCCTGTCCCGGCCATGACTTCTACCTCAGAGACTACACGGGG
TGCTGCTCCTTGTTTTCCGTCGTCTTCCACCCCATGTACAGTGAAGAGGC
CATGCATGCCATGTTGGATTCCTACCAGCTGTTTGCAATCGGGGCGAGTT
GGGGTGGCTTTGAGAGCTTGGTGTTGCCGACGACCAATACGATCACTCGG
TCGATTGAACCGGCGTTTCCTTCGCTGGTGGGGCCAACGGCAAGGTTTCA
TGTAGGGTTGGAGGAGGTGGAGGACTTGAAGGCGGACCTGAGGAGAGGAA
TCGATGTGTTAAAGGCGTTTGATAATGGCGGGAAGTAGGCACTCACCAAA
TACGTCGTGGGTCATTCTGATGCCCTCCTCGGTGCCATCACCGTCAACAC
CAGGGAGAATTGGGAGCAGGTACGACAATGTGTCCTCGAGCTCGGGGAGG
CTGTCTCACCCGACGATTGCTGGTTGGCCATTCGTGGTGCGCGAACACTA
GGAGTCAGGCTGAAGTACCAGATGGAAGCAGGATTGGAGGTGGCCCGACC
CACCACATGCTCGAAGATATGGTCGCCAACATTGAAGGCGGCACCCGCTC
TCAAATTACCAGCTCGGGGCTCTCCGCCTGTACGATCGCCCTTCTTGCCT
ACACCAAAGCAGGAGACCATGTCTTGCTCCCGGATTCTATCTACGGCCCC
GTCCGTGGGTTTGCAGAAGGCATGCTCCGACGCTTTCATGTCGACGTGGA
ATATTACCATGCCTCCGCAACTGGGACAGACGTGGCTGCGTTGTTGAAAG
AGAATACAACGGTCGTGTATATTGAGAGCCCTGGCTCGCATACCTTCGAG
GTGGTGGATGTGAAGGCAATTGCGAGTGTCGCGAGGAATCATGGAGCCAA
GAGCATTTTGGATAATACGTATGGAATTCATTTTTTTCGACCATTTGAGA
AGGGGAATGTGGACATCAGCGTTCAGATGGCTTCAGCCTCCCCACCCCAT
GCCGCCTCACCCACCGGACCCGAGGCACCACCATCGACAGATAAAGGCAA
CGATAAGCACTCCATCATTTTGCAGGGTGGCCTAGGGACCCGCTTGACCC
ACCTGTCCCGCCCCTCTGGTCACTGCTTCGTCAATCCACCAGTGCAGCGA
GGTTCGACTGTGCTCTTTCCCACGGTCAAGGAACGGAATGCTTCATGGTT
TGAGCGCAAGCGCTTCGAGCAAGCCTTGACGTACGGCATCAATGGCAGTG
AGGTACCTGTCGGAGGCCTTCCCTCAAGACGTCGTTACTGTCCTCCACCC
CGCGTTCCCCTCCTGTCCCGGCCATGACTTCTACCTCAGAGACTACACGG
GGTGCTGCTCCTTGTTTTCCGTCGTCTTCCACCCCATGTACAGTGAAGAG
GCCATGCATGCCATGTTGGATTCCTACCAGCTGTTTGCAATCGGGGCGAG
TTGGGGTGGCTTTGAGAGCTTGGTGTTGCCGACGACCAATACGATCACTC
GGTCGATTGAACCGGCGTTTCCTTCGCTGGTGGGGCCAACGGCAAGGTTT
CATGTAGGGTTGGAGGAGGTGGAGGACTTGAAGGCGGACCTGAGGAGAGG
AATCGATGTGTTAAAGGCGTTTGATAATGGCGGGAAGTAGGCACTCACCA
AATACGTCGTGGGTCATTCTGATGCCCTCCTCGGTGCCATCACCGTCAAC
ACCAGGGAGAATTGGGAGCAGGTACGACAATGTGTCCTCGAGCTCGGGGA
GGCTGTCTCACCCGACGATTGCTGGTTGGCCATTCGTGGTGCGCGAACAC
TAGGAGTCAGGCTGAAGTACCAGATGGAAGCAGGATTGGAGGTGGCCCGA
CCCACCACATGCTCGAAGATATGGTCGCCAACATTGAAGGCGGCACCCGC
TCTCAAATTACCAGCTCGGGGCTCTCCGCCTGTACGATCGCCCTTCTTGC
CTACACCAAAGCAGGAGACCATGTCTTGCTCCCGGATTCTATCTACGGCC
CCGTCCGTGGGTTTGCAGAAGGCATGCTCCGACGCTTTCATGTCGACGTG
GAATATTACCATGCCTCCGCAACTGGGACAGACGTGGCTGCGTTGTTGAA
AGAGAATACAACGGTCGTGTATATTGAGAGCCCTGGCTCGCATACCTTCG
AGGTGGTGGATGTGAAGGCAATTGCGAGTGTCGCGAGGAATCATGGAGCC
AAGAGCATTTTGGATAATACGTATGGAATTCATTTTTTTCGACCATTTGA
GAAGGGGAATGTGGACATCAGCGTTCAGATGGCTTCAGCCTCCCCACCCC
ATGCCGCCTCACCCACCGGACCCGAGGCACCACCATCGACAGATAAAGGC
AACGATAAGCACTCCATCATTTTGCAGGGTGGCCTAGGGACCCGCTTGAC
CCACCTGTCCCGCCCCTCTGGTCACTGCTTCGTCAATCCACCAGTGCAGC
GAGGTTCGACTGTGCTCTTTCCCACGGTCAAGGAACGGAATGCTTCATGG
TTTGAGCGCAAGCGCTTCGAGCAAGCCTTGACGTACGGCATCAATGGCAG
TGAGGTACCTGTCGGAGGCCTTCCCTCAAGACGTCGTTACTGTCCTCCAC
CCCGCGTTCCCCTCCTGTCCCGGCCATGACTTCTACCTCAGAGACTACAC
GGGGTGCTGCTCCTTGTTTTCCGTCGTCTTCCACCCCATGTACAGTGAAG
AGGCCATGCATGCCATGTTGGATTCCTACCAGCTGTTTGCAATCGGGGCG
AGTTGGGGTGGCTTTGAGAGCTTGGTGTTGCCGACGACCAATACGATCAC
TCGGTCGATTGAACCGGCGTTTCCTTCGCTGGTGGGGCCAACGGCAAGGT
TTCATGTAGGGTTGGAGGAGGTGGAGGACTTGAAGGCGGACCTGAGGAGA
GGAATCGATGTGTTAAAGGCGTTTGATAATGGCGGGAAGTAGGCACTCAC
CAAATACGTCGTGGGTCATTCTGATGCCCTCCTCGGTGCCATCACCGTCA
ACACCAGGGAGAATTGGGAGCAGGTACGACAATGTGTCCTCGAGCTCGGG
GAGGCTGTCTCACCCGACGATTGCTGGTTGGCCATTCGTGGTGCGCGAAC
ACTAGGAGTCAGGCTGAAGTACCAGATGGAAGCAGGATTGGAGGTGGCCC
GACCCACCACATGCTCGAAGATATGGTCGCCAACATTGAAGGCGGCACCC
GCTCTCAAATTACCAGCTCGGGGCTCTCCGCCTGTACGATCGCCCTTCTT
GCCTACACCAAAGCAGGAGACCATGTCTTGCTCCCGGATTCTATCTACGG
CCCCGTCCGTGGGTTTGCAGAAGGCATGCTCCGACGCTTTCATGTCGACG
TGGAATATTACCATGCCTCCGCAACTGGGACAGACGTGGCTGCGTTGTTG
AAAGAGAATACAACGGTCGTGTATATTGAGAGCCCTGGCTCGCATACCTT
CGAGGTGGTGGATGTGAAGGCAATTGCGAGTGTCGCGAGGAATCATGGAG
CCAAGAGCATTTTGGATAATACGTATGGAATTCATTTTTTTCGACCATTT
GAGAAGGGGAATGTGGACATCAGCGTTCAGATGGCTTCAGCCTCCCCACC
CCATGCCGCCTCACCCACCGGACCCGAGGCACCACCATCGACAGATAAAG
GCAACGATAAGCACTCCATCATTTTGCAGGGTGGCCTAGGGACCCGCTTG
ACCCACCTGTCCCGCCCCTCTGGTCACTGCTTCGTCAATCCACCAGTGCA
GCGAGGTTCGACTGTGCTCTTTCCCACGGTCAAGGAACGGAATGCTTCAT
GGTTTGAGCGCAAGCGCTTCGAGCAAGCCTTGACGTACGGCATCAATGGC
AGTGAGGTACCTGTCGGAGGCCTTCCCTCAAGACGTCGTTACTGTCCTCC
ACCCCGCGTTCCCCTCCTGTCCCGGCCATGACTTCTACCTCAGAGACTAC
ACGGGGTGCTGCTCCTTGTTTTCCGTCGTCTTCCACCCCATGTACAGTGA
AGAGGCCATGCATGCCATGTTGGATTCCTACCAGCTGTTTGCAATCGGGG
CGAGTTGGGGTGGCTTTGAGAGCTTGGTGTTGCCGACGACCAATACGATC
ACTCGGTCGATTGAACCGGCGTTTCCTTCGCTGGTGGGGCCAACGGCAAG
GTTTCATGTAGGGTTGGAGGAGGTGGAGGACTTGAAGGCGGACCTGAGGA
GAGGAATCGATGTGTTAAAGGCGTTTGATAATGGCGGGAAGTAGGCACTC
ACCAAATACGTCGTGGGTCATTCTGATGCCCTCCTCGGTGCCATCACCGT
CAACACCAGGGAGAATTGGGAGCAGGTACGACAATGTGTCCTCGAGCTCG
GGGAGGCTGTCTCACCCGACGATTGCTGGTTGGCCATTCGTGGTGCGCGA
ACACTAGGAGTCAGGCTGAAGTACCAGATGGAAGCAGGATTGGAGGTGGC
CCGACCCACCACATGCTCGAAGATATGGTCGCCAACATTGAAGGCGGCAC
CCGCTCTCAAATTACCAGCTCGGGGCTCTCCGCCTGTACGATCGCCCTTC
TTGCCTACACCAAAGCAGGAGACCATGTCTTGCTCCCGGATTCTATCTAC
GGCCCCGTCCGTGGGTTTGCAGAAGGCATGCTCCGACGCTTTCATGTCGA
CGTGGAATATTACCATGCCTCCGCAACTGGGACAGACGTGGCTGCGTTGT
TGAAAGAGAATACAACGGTCGTGTATATTGAGAGCCCTGGCTCGCATACC
TTCGAGGTGGTGGATGTGAAGGCAATTGCGAGTGTCGCGAGGAATCATGG
AGCCAAGAGCATTTTGGATAATACGTATGGAATTCATTTTTTTCGACCAT
TTGAGAAGGGGAATGTGGACATCAGCGTTCAGATGGCTTCAGCCTCCCCA
CCCCATGCCGCCTCACCCACCGGACCCGAGGCACCACCATCGACAGATAA
AGGCAACGATAAGCACTCCATCATTTTGCAGGGTGGCCTAGGGACCCGCT
TGACCCACCTGTCCCGCCCCTCTGGTCACTGCTTCGTCAATCCACCAGTG
CAGCGAGGTTCGACTGTGCTCTTTCCCACGGTCAAGGAACGGAATGCTTC
ATGGTTTGAGCGCAAGCGCTTCGAGCAAGCCTTGACGTACGGCATCAATG
GCAGTGAG back to top
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