jgi.p|Nanoce1779_2|576229, mRNA_103 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576229
Unique NamemRNA_103
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length478
Alignment locationscaffold_3:279818..280295 +

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Properties
Property NameValue
TranscriptId576315
TrackFilteredModels2
ProteinId576229
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:279818..280295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576229gene_103Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576229mRNA_103-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_103CDS_103Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_103 ID=mRNA_103|Name=jgi.p|Nanoce1779_2|576229|organism=Nannochloropsis oceanica|type=mRNA|length=478bp
AGTACAGACATATTGCTTCTGCGCGCCCACACGACTCAAGCCATGTTACA
GCGGCAGCGGCGACGCTCTTGCAATGCCTCCCCTCGGCGGCGACTAGCAA
GCTTGATGTTGCCCATGTTGCTTCTTCAAACTTGCTGGGCCGTGCCCGTG
GCCCTCCCTGCGTGGGCAACCGCGTTCAAGGAGCACGTCTACGCCCTGCA
GGAGCAGATGGAGGGACTACACTTTGGCGCGGACGAGTTTGTGGGCTTGC
GTGACAAGGTAAGTGTGTGTTTGGGCAGGGTCTGACGGATGAAGTTGTGA
TGACACCCCTCCCTCACCTCCCCCTTTTTGTGCCTTCTAACGCACGTGCA
TACGCAGCTTGTGATGCATCCGTCTTGAAAATGGATGGAAATCTCATGCC
ACGCGATTTACCACCCACCGCCCTACCCCCTTTCTCTTCATCCCGGGCTC
TCACCACCCACCCACCCTCCCTCCCTCC
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protein sequence of jgi.p|Nanoce1779_2|576229

>mRNA_103-protein ID=mRNA_103-protein|Name=jgi.p|Nanoce1779_2|576229|organism=Nannochloropsis oceanica|type=polypeptide|length=81bp
MLQRQRRRSCNASPRRRLASLMLPMLLLQTCWAVPVALPAWATAFKEHVY
ALQEQMEGLHFGADEFVGLRDKVSVCLGRV*
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mRNA from alignment at scaffold_3:279818..280295+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_103 ID=mRNA_103|Name=jgi.p|Nanoce1779_2|576229|organism=Nannochloropsis oceanica|type=mRNA|length=478bp|location=Sequence derived from alignment at scaffold_3:279818..280295+ (Nannochloropsis oceanica)
AGTACAGACATATTGCTTCTGCGCGCCCACACGACTCAAGCCATGTTACA
GCGGCAGCGGCGACGCTCTTGCAATGCCTCCCCTCGGCGGCGACTAGCAA
GCTTGATGTTGCCCATGTTGCTTCTTCAAACTTGCTGGGCCGTGCCCGTG
GCCCTCCCTGCGTGGGCAACCGCGTTCAAGGAGCACGTCTACGCCCTGCA
GGAGCAGATGGAGGGACTACACTTTGGCGCGGACGAGTTTGTGGGCTTGC
GTGACAAGGTAAGTGTGTGTTTGGGCAGGGTCTGACGGATGAAGTTGTGA
TGACACCCCTCCCTCACCTCCCCCTTTTTGTGCCTTCTAACGCACGTGCA
TACGCAGCTTGTGATGCATCCGTCTTGAAAATGGATGGAAATCTCATGCC
ACGCGATTTACCACCCACCGCCCTACCCCCTTTCTCTTCATCCCGGGCTC
TCACCACCCACCCACCCTCCCTCCCTCC
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Coding sequence (CDS) from alignment at scaffold_3:279818..280295+

>mRNA_103 ID=mRNA_103|Name=jgi.p|Nanoce1779_2|576229|organism=Nannochloropsis oceanica|type=CDS|length=243bp|location=Sequence derived from alignment at scaffold_3:279818..280295+ (Nannochloropsis oceanica)
ATGTTACAGCGGCAGCGGCGACGCTCTTGCAATGCCTCCCCTCGGCGGCG
ACTAGCAAGCTTGATGTTGCCCATGTTGCTTCTTCAAACTTGCTGGGCCG
TGCCCGTGGCCCTCCCTGCGTGGGCAACCGCGTTCAAGGAGCACGTCTAC
GCCCTGCAGGAGCAGATGGAGGGACTACACTTTGGCGCGGACGAGTTTGT
GGGCTTGCGTGACAAGGTAAGTGTGTGTTTGGGCAGGGTCTGA
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Synonyms
Publications