jgi.p|Nanoce1779_2|611886, mRNA_10297 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611886
Unique NamemRNA_10297
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length802
Alignment locationscaffold_60:12868..13926 +

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Properties
Property NameValue
TranscriptId611972
TrackFilteredModels2
ProteinId611886
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:12868..13926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611886gene_10297Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611886mRNA_10297-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10297CDS_10297Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10297 ID=mRNA_10297|Name=jgi.p|Nanoce1779_2|611886|organism=Nannochloropsis oceanica|type=mRNA|length=802bp
AACAGGCAGTCAAATTGTAGGCCTAGCCACCGAGCCTCGTGTTAATCATG
CGCGGCGCTCTCCTTTCCACCGCTGTCGTGGCTTTGTCCCTGGGCTTGGT
GCGAGGAGGGGCGAGTGGGGACGCCAGTGGCAATATCCCGGCCCGGCTTC
GAGCCACCGGCCATGCTGAGGATAACCACGAACTGCGAAAGCTTCATGAT
GAACTTGTCAAGGAGCAGCATCAGCACGAAGCCAAGTTTGAAAGGCGTGT
ATCCGTAGAAGAGATCAAGGCTTTGGTGGCCCACCAACGAGAAGCGCATC
CTGCTCACCAGACCGCCAAGGAGAACTTCCAGCGGATGAAGTTGCAGCGC
AAGGCTCGCTTTGACAGCATGCTCCGAGAGGGGGAAAAGGCGGCGATCGC
ATCCGGTCACCTGCTGCAAGGGTTCATCTACGGAAAAGAGGCCGTACAGG
AACACGAAATTCGAATGGAGCAAGCGAATCGGATTTTACTACAGCAAGGG
GCACGATAGAGTGGCGTGTGGGAAAGAGATGAATGAAGAAAGCGGCATGG
GCAGGGGTAGCGCGTGTATACGAAGATTGCCATAGGTTTAAAAAGCTTGT
TAGAAATCAACCAATGGGTGGAGAGAAAGAAGAGTACGCAATAATTTAAA
AGGCCGAGAGAATTGAAAAGACAACCTAGTGGATGAAATAAAAAGCAACC
GATGTCTAAGTTCATACGCATAACTATCTGACAATTGATTTTCCATTCTA
CTCAAGAAGCAGGAAAGCAAACAGAAAAAGCAGACATAAAGTGACTCTAA
AA
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protein sequence of jgi.p|Nanoce1779_2|611886

>mRNA_10297-protein ID=mRNA_10297-protein|Name=jgi.p|Nanoce1779_2|611886|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MRGALLSTAVVALSLGLVRGGASGDASGNIPARLRATGHAEDNHELRKLH
DELVKEQHQHEAKFERRVSVEEIKALVAHQREAHPAHQTAKENFQRMKLQ
RKARFDSMLREGEKAAIASGHLLQGFIYGKEAVQEHEIRMEQANRILLQQ
GAR*
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mRNA from alignment at scaffold_60:12868..13926+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10297 ID=mRNA_10297|Name=jgi.p|Nanoce1779_2|611886|organism=Nannochloropsis oceanica|type=mRNA|length=1059bp|location=Sequence derived from alignment at scaffold_60:12868..13926+ (Nannochloropsis oceanica)
AACAGGCAGTCAAATTGTAGGCCTAGCCACCGAGCCTCGTGTTAATCATG
CGCGGCGCTCTCCTTTCCACCGCTGTCGTGGCTTTGTCCCTGGGCTTGGT
GCGAGGAGGGGCGAGTGGGGACGCCAGTGGCAATATCCCGGCCCGGCTTC
GAGCCACCGGCCATGCTGAGGATAACCACGAACTGCGAAAGCTTCATGAT
GAACTTGTCAAGGAGCAGCATCAGCACGAAGCCAAGTTTGAAAGGCGTGT
ATCCGTAGAAGAGATCAAGGCTTTGGTGGCCCACCAACGAGAAGCGCATC
CTGGTAAGTCCGAAATGTCATCGCGAGGGTGCGAGAGGAGCAAAAAGATA
GAGAGGGAAAGCGGAGGTATGCCGTAATACTCGGCTGGACATACCAAACG
CCGTGAATAGACCAGAGATCGAGAGTAGGCTGAGATGGAGAGAGCATGGT
GACAATTCTTGCTTCGGATTCGTCTATCATTCAGCAAAGAGTAATTCACC
GATACTCGCCTCCCTCCCTTCTTCACTTTCACATTTTATTATCCTACAAT
CAATTCACAGCTCACCAGACCGCCAAGGAGAACTTCCAGCGGATGAAGTT
GCAGCGCAAGGCTCGCTTTGACAGCATGCTCCGAGAGGGGGAAAAGGCGG
CGATCGCATCCGGTCACCTGCTGCAAGGGTTCATCTACGGAAAAGAGGCC
GTACAGGAACACGAAATTCGAATGGAGCAAGCGAATCGGATTTTACTACA
GCAAGGGGCACGATAGAGTGGCGTGTGGGAAAGAGATGAATGAAGAAAGC
GGCATGGGCAGGGGTAGCGCGTGTATACGAAGATTGCCATAGGTTTAAAA
AGCTTGTTAGAAATCAACCAATGGGTGGAGAGAAAGAAGAGTACGCAATA
ATTTAAAAGGCCGAGAGAATTGAAAAGACAACCTAGTGGATGAAATAAAA
AGCAACCGATGTCTAAGTTCATACGCATAACTATCTGACAATTGATTTTC
CATTCTACTCAAGAAGCAGGAAAGCAAACAGAAAAAGCAGACATAAAGTG
ACTCTAAAA
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Coding sequence (CDS) from alignment at scaffold_60:12868..13926+

>mRNA_10297 ID=mRNA_10297|Name=jgi.p|Nanoce1779_2|611886|organism=Nannochloropsis oceanica|type=CDS|length=924bp|location=Sequence derived from alignment at scaffold_60:12868..13926+ (Nannochloropsis oceanica)
ATGCGCGGCGCTCTCCTTTCCACCGCTGTCGTGGCTTTGTCCCTGGGCTT
GGTGCGAGGAGGGGCGAGTGGGGACGCCAGTGGCAATATCCCGGCCCGGC
TTCGAGCCACCGGCCATGCTGAGGATAACCACGAACTGCGAAAGCTTCAT
GATGAACTTGTCAAGGAGCAGCATCAGCACGAAGCCAAGTTTGAAAGGCG
TGTATCCGTAGAAGAGATCAAGGCTTTGGTGGCCCACCAACGAGAAGCGC
ATCCTGCTCACCAGACCGCCAAGGAGAACTTCCAGCGGATGAAGTTGCAG
CGCAAGGCTCGCTTTGACAGCATGCTCCGAGAGGGGGAAAAGGCGGCGAT
CGCATCCGGTCACCTGCTGCAAGGGTTCATCTACGGAAAAGAGGCCGTAC
AGGAACACGAAATTCGAATGGAGCAAGCGAATCGGATTTTACTACAGCAA
GGGGCACGATAGATGCGCGGCGCTCTCCTTTCCACCGCTGTCGTGGCTTT
GTCCCTGGGCTTGGTGCGAGGAGGGGCGAGTGGGGACGCCAGTGGCAATA
TCCCGGCCCGGCTTCGAGCCACCGGCCATGCTGAGGATAACCACGAACTG
CGAAAGCTTCATGATGAACTTGTCAAGGAGCAGCATCAGCACGAAGCCAA
GTTTGAAAGGCGTGTATCCGTAGAAGAGATCAAGGCTTTGGTGGCCCACC
AACGAGAAGCGCATCCTGCTCACCAGACCGCCAAGGAGAACTTCCAGCGG
ATGAAGTTGCAGCGCAAGGCTCGCTTTGACAGCATGCTCCGAGAGGGGGA
AAAGGCGGCGATCGCATCCGGTCACCTGCTGCAAGGGTTCATCTACGGAA
AAGAGGCCGTACAGGAACACGAAATTCGAATGGAGCAAGCGAATCGGATT
TTACTACAGCAAGGGGCACGATAG
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Synonyms
Publications