jgi.p|Nanoce1779_2|611880, mRNA_10293 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|611880
Unique Name	mRNA_10293
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1523
Alignment location	scaffold_60:6614..8639 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	611966
Track	FilteredModels2
ProteinId	611880

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_60	supercontig	scaffold_60:6614..8639 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611880	gene_10293	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611880	mRNA_10293-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10293	CDS_10293	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_60:6614..8639+
coding sequence from alignment at scaffold_60:6614..8639+

mRNA sequence

>mRNA_10293 ID=mRNA_10293|Name=jgi.p|Nanoce1779_2|611880|organism=Nannochloropsis oceanica|type=mRNA|length=1523bp
ACAGGTGTCTGCAATCCTCGTAGTAGTGCAACCCCAAGCCAAGACCAAGC
GAAGCATCTCCACCACCCGCGCTTAGCCTCCCGTCGGTCAGGCCTCTCAA
TCCCTGCGACGCCACGACACCACACAACGACAATGCCCTCGGACATGCGA
ACATTACCACTACCAGTCCCTTCTGTTCCTTCCACCGTCACAGCCACCAC
TTCGACACCTACTACGAGCTCGTCTACGGACATCGTCCCCAGTACTAGCA
GGCCCCCACCTCCAGCCAAACGTCAAGTCAAGCGCTTTGTCGGCAAGGCC
AATAGAATCCCGGACGATATTCTGGAAGACCCTTCCTTGATCCAAGCTAT
TGCCCAGCTCCCGTCAAACTACAACTTCGAAATTCATAAGACAATCTGGC
GGCTGCGGGAGGCAGCTGCGACGTGTGTGGCGCTGCAATTTCCTGAAGGG
CTGTTGATGTACGCCTGTACGATTGCTGATATGGTGGAACGCTTCGTGCC
ATCAGTGAAGGAGGTGGTGGTGATGGGGGATGTGACATATGGGGCATGCT
GTATCGATGACTTGGGGGCCACGGCCGCAGGGGCTGATTTTCTGGTGCAT
TATGGGCATAGTTGCTTGGTGCCTGTTACCTGCACCTCGCTCAAGGCCCT
GTATGTCTTTGTGGAGATTAGGGTGGACGCCACGCATCTCATCGCGAGTC
TGAGTCGAAATTTGGAGGGAGAGAGGAGGGTGTGCTTGATGGGTACGATC
CAGTTTGTATCGGCCGTCCATGAGGCCGCTGCGGGGCTCAAGGAGCATTT
TGCATCTGTACATGTCCCGCAGGCTCGGCCCATGTCTGCGGGCGAGGTGC
TGGGATGTACGGCTCCGACGTTGGATAGCACGGCATTTGATACCTTGGTG
TTTGTGGCGGATGGACGGTTCCATTTGGAGGCGGCCATGATCGCTAATCC
CTCCCTCGAGGCCTACAGGTATAATCCCTACGATAAGACTTTGACCAGGG
AAGTATACGACACTCCCAAAATGCTGCGTTTGCGAAAGGCAGCGGTTGAG
GCAGGAAAAGGTTCGAGGCGGTGGGGAGTGATAATGGGAACCTTGGGTCG
ACAGGGAAATCCGGCCTTAGTCAAGCACGCGATGGACCTGTTGGAGGGAG
CGGGGAAAGAGGCTTTCGTCTTGCTCTTGTCCGAGATTACCCCACAAAAA
TTAGCCTTGTTAGACGAAGAGGTGGATGCTTGGGTGCAGATAGCGTGTCC
TCGGTTGTCGATAGATTGGGGACTTTTCTTTACCACACCTGTCTTGACAG
CGTACGAGCTGGAGGTGGCCTTGGGCGGGGAAGCCTGGTCTGAGACAAGC
TACCCCATGGACTACTACGCCAAGGACGGTGGGGCCTGGGGCAACCTCCA
TCCCATTAATGCCAAGCGAGTCATGCTCTAGTGTGTACACGGAATGATGA
AAAAATCTGAAAATGATGTAATGGAGTTTCTTGTTTTTTTTATGGGGTGT
AGAAAGATGAAAAAGAAACATGG

protein sequence of jgi.p|Nanoce1779_2|611880

>mRNA_10293-protein ID=mRNA_10293-protein|Name=jgi.p|Nanoce1779_2|611880|organism=Nannochloropsis oceanica|type=polypeptide|length=433bp
MPSDMRTLPLPVPSVPSTVTATTSTPTTSSSTDIVPSTSRPPPPAKRQVK
RFVGKANRIPDDILEDPSLIQAIAQLPSNYNFEIHKTIWRLREAAATCVA
LQFPEGLLMYACTIADMVERFVPSVKEVVVMGDVTYGACCIDDLGATAAG
ADFLVHYGHSCLVPVTCTSLKALYVFVEIRVDATHLIASLSRNLEGERRV
CLMGTIQFVSAVHEAAAGLKEHFASVHVPQARPMSAGEVLGCTAPTLDST
AFDTLVFVADGRFHLEAAMIANPSLEAYRYNPYDKTLTREVYDTPKMLRL
RKAAVEAGKGSRRWGVIMGTLGRQGNPALVKHAMDLLEGAGKEAFVLLLS
EITPQKLALLDEEVDAWVQIACPRLSIDWGLFFTTPVLTAYELEVALGGE
AWSETSYPMDYYAKDGGAWGNLHPINAKRVML*

mRNA from alignment at scaffold_60:6614..8639+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10293 ID=mRNA_10293|Name=jgi.p|Nanoce1779_2|611880|organism=Nannochloropsis oceanica|type=mRNA|length=2026bp|location=Sequence derived from alignment at scaffold_60:6614..8639+ (Nannochloropsis oceanica)
ACAGGTGTCTGCAATCCTCGTAGTAGTGCAACCCCAAGCCAAGACCAAGC
GAAGCATCTCCACCACCCGCGCTTAGCCTCCCGTCGGTCAGGCCTCTCAA
TCCCTGCGACGCCACGACACCACACAACGACAATGCCCTCGGACATGCGA
ACATTACCACTACCAGTCCCTTCTGTTCCTTCCACCGTCACAGCCACCAC
TTCGACACCTACTACGAGCTCGTCTACGGACATCGTCCCCAGTACTAGCA
GGCCCCCACCTCCAGCCAAACGTCAAGTCAAGGTACGTCTTGATGTTCGT
TTGCACAACCACGATTTTCCATCTCACTTTTTTGCTGGAATAGGAAGGCC
CAGGCCACCGGTGATGTCGTTTGGCGGCTTGAATTGCACGAGCTACAGTA
TCATGCATTAGCTTCGCTGCAGGCAATGCTTGCACACACTCCAGACACTG
ACCCCTTAGTTTTTTAACCACTAACGCGTACCAAATTAGTCAAGAAATAC
TTGATCAAACCAATCGATGCACACTTGACTAGGCCAAGTATCATTTCTGC
CAGCAAAGAGTACATGAGTCGACCTTCTTGCATCTGCGCCTCTGCTACAC
CCCCGCTGGAATCGTTTTCCCTTCTCTCTTCAATCTCTCGACACTCCGAT
CTAGATCACACATTAAACTCGTGATTATTTCCCAATGAGAGGGTCTCCTT
GCCCTCCTTTCTTCCCCCCAATCCCCCTCCCTCATTTCCCTCCCTCCCCT
TCTCCCTTCCCCTCCAACCCCTGCACAACGAACAGCGCTTTGTCGGCAAG
GCCAATAGAATCCCGGACGATATTCTGGAAGACCCTTCCTTGATCCAAGC
TATTGCCCAGCTCCCGTCAAACTACAACTTCGAAATTCATAAGACAATCT
GGCGGCTGCGGGAGGCAGCTGCGACGTGTGTGGCGCTGCAATTTCCTGAA
GGGCTGTTGATGTACGCCTGTACGATTGCTGATATGGTGGAACGCTTCGT
GCCATCAGTGAAGGAGGTGGTGGTGATGGGGGATGTGACATATGGGGCAT
GCTGTATCGATGACTTGGGGGCCACGGCCGCAGGGGCTGATTTTCTGGTG
CATTATGGGCATAGTTGCTTGGTGCCTGTTACCTGCACCTCGCTCAAGGC
CCTGTATGTCTTTGTGGAGATTAGGGTGGACGCCACGCATCTCATCGCGA
GTCTGAGTCGAAATTTGGAGGGAGAGAGGAGGGTGTGCTTGATGGGTACG
ATCCAGTTTGTATCGGCCGTCCATGAGGCCGCTGCGGGGCTCAAGGAGCA
TTTTGCATCTGTACATGTCCCGCAGGCTCGGCCCATGTCTGCGGGCGAGG
TGCTGGGATGTACGGCTCCGACGTTGGATAGCACGGCATTTGATACCTTG
GTGTTTGTGGCGGATGGACGGTTCCATTTGGAGGCGGCCATGATCGCTAA
TCCCTCCCTCGAGGCCTACAGGTATAATCCCTACGATAAGACTTTGACCA
GGGAAGTATACGACACTCCCAAAATGCTGCGTTTGCGAAAGGCAGCGGTT
GAGGCAGGAAAAGGTTCGAGGCGGTGGGGAGTGATAATGGGAACCTTGGG
TCGACAGGGAAATCCGGCCTTAGTCAAGCACGCGATGGACCTGTTGGAGG
GAGCGGGGAAAGAGGCTTTCGTCTTGCTCTTGTCCGAGATTACCCCACAA
AAATTAGCCTTGTTAGACGAAGAGGTGGATGCTTGGGTGCAGATAGCGTG
TCCTCGGTTGTCGATAGATTGGGGACTTTTCTTTACCACACCTGTCTTGA
CAGCGTACGAGCTGGAGGTGGCCTTGGGCGGGGAAGCCTGGTCTGAGACA
AGCTACCCCATGGACTACTACGCCAAGGACGGTGGGGCCTGGGGCAACCT
CCATCCCATTAATGCCAAGCGAGTCATGCTCTAGTGTGTACACGGAATGA
TGAAAAAATCTGAAAATGATGTAATGGAGTTTCTTGTTTTTTTTATGGGG
TGTAGAAAGATGAAAAAGAAACATGG

Coding sequence (CDS) from alignment at scaffold_60:6614..8639+

>mRNA_10293 ID=mRNA_10293|Name=jgi.p|Nanoce1779_2|611880|organism=Nannochloropsis oceanica|type=CDS|length=2598bp|location=Sequence derived from alignment at scaffold_60:6614..8639+ (Nannochloropsis oceanica)
ATGCCCTCGGACATGCGAACATTACCACTACCAGTCCCTTCTGTTCCTTC
CACCGTCACAGCCACCACTTCGACACCTACTACGAGCTCGTCTACGGACA
TCGTCCCCAGTACTAGCAGGCCCCCACCTCCAGCCAAACGTCAAGTCAAG
CGCTTTGTCGGCAAGGCCAATAGAATCCCGGACGATATTCTGGAAGACCC
TTCCTTGATCCAAGCTATTGCCCAGCTCCCGTCAAACTACAACTTCGAAA
TTCATAAGACAATCTGGCGGCTGCGGGAGGCAGCTGCGACGTGTGTGGCG
CTGCAATTTCCTGAAGGGCTGTTGATGTACGCCTGTACGATTGCTGATAT
GGTGGAACGCTTCGTGCCATCAGTGAAGGAGGTGGTGGTGATGGGGGATG
TGACATATGGGGCATGCTGTATCGATGACTTGGGGGCCACGGCCGCAGGG
GCTGATTTTCTGGTGCATTATGGGCATAGTTGCTTGGTGCCTGTTACCTG
CACCTCGCTCAAGGCCCTGTATGTCTTTGTGGAGATTAGGGTGGACGCCA
CGCATCTCATCGCGAGTCTGAGTCGAAATTTGGAGGGAGAGAGGAGGGTG
TGCTTGATGGGTACGATCCAGTTTGTATCGGCCGTCCATGAGGCCGCTGC
GGGGCTCAAGGAGCATTTTGCATCTGTACATGTCCCGCAGGCTCGGCCCA
TGTCTGCGGGCGAGGTGCTGGGATGTACGGCTCCGACGTTGGATAGCACG
GCATTTGATACCTTGGTGTTTGTGGCGGATGGACGGTTCCATTTGGAGGC
GGCCATGATCGCTAATCCCTCCCTCGAGGCCTACAGGTATAATCCCTACG
ATAAGACTTTGACCAGGGAAGTATACGACACTCCCAAAATGCTGCGTTTG
CGAAAGGCAGCGGTTGAGGCAGGAAAAGGTTCGAGGCGGTGGGGAGTGAT
AATGGGAACCTTGGGTCGACAGGGAAATCCGGCCTTAGTCAAGCACGCGA
TGGACCTGTTGGAGGGAGCGGGGAAAGAGGCTTTCGTCTTGCTCTTGTCC
GAGATTACCCCACAAAAATTAGCCTTGTTAGACGAAGAGGTGGATGCTTG
GGTGCAGATAGCGTGTCCTCGGTTGTCGATAGATTGGGGACTTTTCTTTA
CCACACCTGTCTTGACAGCGTACGAGCTGGAGGTGGCCTTGGGCGGGGAA
GCCTGGTCTGAGACAAGCTACCCCATGGACTACTACGCCAAGGACGGTGG
GGCCTGGGGCAACCTCCATCCCATTAATGCCAAGCGAGTCATGCTCTAGA
TGCCCTCGGACATGCGAACATTACCACTACCAGTCCCTTCTGTTCCTTCC
ACCGTCACAGCCACCACTTCGACACCTACTACGAGCTCGTCTACGGACAT
CGTCCCCAGTACTAGCAGGCCCCCACCTCCAGCCAAACGTCAAGTCAAGC
GCTTTGTCGGCAAGGCCAATAGAATCCCGGACGATATTCTGGAAGACCCT
TCCTTGATCCAAGCTATTGCCCAGCTCCCGTCAAACTACAACTTCGAAAT
TCATAAGACAATCTGGCGGCTGCGGGAGGCAGCTGCGACGTGTGTGGCGC
TGCAATTTCCTGAAGGGCTGTTGATGTACGCCTGTACGATTGCTGATATG
GTGGAACGCTTCGTGCCATCAGTGAAGGAGGTGGTGGTGATGGGGGATGT
GACATATGGGGCATGCTGTATCGATGACTTGGGGGCCACGGCCGCAGGGG
CTGATTTTCTGGTGCATTATGGGCATAGTTGCTTGGTGCCTGTTACCTGC
ACCTCGCTCAAGGCCCTGTATGTCTTTGTGGAGATTAGGGTGGACGCCAC
GCATCTCATCGCGAGTCTGAGTCGAAATTTGGAGGGAGAGAGGAGGGTGT
GCTTGATGGGTACGATCCAGTTTGTATCGGCCGTCCATGAGGCCGCTGCG
GGGCTCAAGGAGCATTTTGCATCTGTACATGTCCCGCAGGCTCGGCCCAT
GTCTGCGGGCGAGGTGCTGGGATGTACGGCTCCGACGTTGGATAGCACGG
CATTTGATACCTTGGTGTTTGTGGCGGATGGACGGTTCCATTTGGAGGCG
GCCATGATCGCTAATCCCTCCCTCGAGGCCTACAGGTATAATCCCTACGA
TAAGACTTTGACCAGGGAAGTATACGACACTCCCAAAATGCTGCGTTTGC
GAAAGGCAGCGGTTGAGGCAGGAAAAGGTTCGAGGCGGTGGGGAGTGATA
ATGGGAACCTTGGGTCGACAGGGAAATCCGGCCTTAGTCAAGCACGCGAT
GGACCTGTTGGAGGGAGCGGGGAAAGAGGCTTTCGTCTTGCTCTTGTCCG
AGATTACCCCACAAAAATTAGCCTTGTTAGACGAAGAGGTGGATGCTTGG
GTGCAGATAGCGTGTCCTCGGTTGTCGATAGATTGGGGACTTTTCTTTAC
CACACCTGTCTTGACAGCGTACGAGCTGGAGGTGGCCTTGGGCGGGGAAG
CCTGGTCTGAGACAAGCTACCCCATGGACTACTACGCCAAGGACGGTGGG
GCCTGGGGCAACCTCCATCCCATTAATGCCAAGCGAGTCATGCTCTAG

Synonyms

Publications