jgi.p|Nanoce1779_2|674869, mRNA_10291 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|674869
Unique NamemRNA_10291
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2058
Alignment locationscaffold_60:1177..3234 -

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Properties
Property NameValue
TranscriptId674955
TrackFilteredModels2
ProteinId674869
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1177..3234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674869gene_10291Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674869mRNA_10291-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10291CDS_10291Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10291 ID=mRNA_10291|Name=jgi.p|Nanoce1779_2|674869|organism=Nannochloropsis oceanica|type=mRNA|length=2058bp
ACAGGACATACGCTCTCCTCCCGGCACTTAAATTCCTTTCGTGCAGCAAG
TCAGCACCACCTCCATAGACATCCATTATGCCTTCGAAGGATTCCTCACC
GTCTAAGCCATTTTTTGGCATGAAACTCTTCTCCGGCCTGTGGCGCTCGT
CCGCCTCGTCTCCGTCGCGTCGCTCCTCACAAAACCGACCAACCGTCCCT
TTTGCCTTGCAAGCCCCGTCACACTCGCCTTCGACACAGGTCCAAGCTCC
ACTGGCCTCTTCCATATCTTTTGGTGACTTCTCGCGCGTGGGCAGCACCA
TGGCGAGGGACATGACCCCCCCCCCGCTCCTCCTCGTCCTCCCCTTCGGG
TCCAATCACCCCTCCACCGCCCCTTCTGAACGTGATCCGAGCAAAGGACC
CCAAGGCATTCAAGGGCAAAGCAGCTTTGACCCGGTACCTGGATGCGATG
GACCAAGAGGAAGGCAGAGGCATACAAACGGGGGGATTACTCGCGGATCC
AACGCAGGCCTCCTCGGCCAAGCACACCGAAATCCCACCGTCCACTACAG
TAGCGAGTTAGCCAAGCAGAATTTCTCCTTTCTCCGCATCATTTTTTGCG
GGAGAAATGGGATGGGGTCCTTTTGGTTTATCAAGAAAATTCTTCCACAG
TTGGTTGTCGGCATCTTGCTCAACTTGGTTGTAGAGTGGTCGGGCCTTCG
GGAGACGGGCTGGTGGGCTGGCCGTGCTGACACGCAGCGACTGCACGGGT
TCGTTGGGGCAGTCTGGCTTTTGTCTTGGTTTTTCGGAGCAATGCTAGTT
ATGACCGCTACTATGAGGCACGCAAAACGCTGGGTCTGATTACAAACCAA
TGCCGCGAAGCGGTTCTGGAATCATGTTCCGTATTTATCGTCACAGATGA
AGGTGAGCACAACAACCTGTATAGGAACGAGATTCGCAGAAAGTTCCTGG
TCATGATAGCATTCATCCGGCAAAACATTCGCGAGTCCCACGTGGGGTTC
ATGCCCAACTCTTCCGAAAGCAATACGCCTTTCCACGAAGGCACCAACTA
CATAAGGGATCCGATCCGGCCCCGCCTGTGCGACCTGCTGACGCCTTCCG
AGGTCGAAGGTTATGTCAACGTCCAACCTTCGGCGCGCGCGGCGTGTGTG
GCCAGTGAGATCAAGGGCATTGCGCAGCTTTTGGCGCGGAACGTGGAGTT
CGGCTTTTTGTATTACAGCAAGATAAGCCAGTGTCTGCAGTTGTCTTTAG
ACTCGCAAGAGACTCTGTACCGCATCGTGACCACGCCGGTTCCTATCCCT
ACACCTGGATTCTGAATGCGATGCTGGTGGTGTTTATCTACTCCGTACCT
TTTTTGTACGAATCTAAAAGGGGTGGATCTTATTTTGGGATGATCATTTT
GGTAGTGGCGTACTTTGGGTGCCAGCGAATTGCGCAGCAGTGCGAGAATC
CCTTGGAGTGGGACGCCTGCGATCTCGACGTCGAGCTCTTGACCATGAGT
AACCATGACGACACGCGCGACATTTCCAACTTTACGCACAGCCTCAACAA
GGGCTTCATCCCCAGCAATATTCGTCGCACTGCCCCTGAGCCTCCCGCGC
CTGTCCCTGACCTGGCCACTACCACCCCTCCGGAGCCCGAAGGAGAGGCA
ACAACGCCAACCAATCCCAAGGGGGAGGCAACAACTCTGATCAAGCCCAC
GTCGTCTATGGCTGAAGAGACTGGGTCGCCCAAGTCGGCTGCGACCGCAC
CATCGTCGTCCGTGCTCGCCGATGCAAAAGTAGTGAGCCGTGAGAGTGAT
AAGTGATGATACGCACAGAAAACGAAGTTATTTTTCCTCCAAATACTTCT
CTTTTTAAATCGCCATAATGTGGTTTGCCACCAGCTTGCATGGTGATATA
TATTTTACCACATAATTAGCAACAATAAATAAATAAATAAATAGGCCCGC
CCGGCTAACCTGAACATCATCATACAGCCTTCCTTGGATCCCTCAATCAA
CAAAAAGCGCGAAGCGCGAAGCGCAAAATTAAAACAAAAACACACTAAAT
ACCATGAA
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protein sequence of jgi.p|Nanoce1779_2|674869

>mRNA_10291-protein ID=mRNA_10291-protein|Name=jgi.p|Nanoce1779_2|674869|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MPSKDSSPSKPFFGMKLFSGLWRSSASSPSRRSSQNRPTVPFALQAPSHS
PSTQVQAPLASSISFGDFSRVGSTMARDMTPPPLLLVLPFGSNHPSTAPS
ERDPSKGPQGIQGQSSFDPVPGCDGPRGRQRHTNGGITRGSNAGLLGQAH
RNPTVHYSSELAKQNFSFLRIIFCGRNGMGSFWFIKKILPQLVVGILLNL
VVEWSGLRETGWWAGRADTQRLHGFVGAVWLLSWFFGAMLVMTATMRHAK
RWV*
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mRNA from alignment at scaffold_60:1177..3234-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10291 ID=mRNA_10291|Name=jgi.p|Nanoce1779_2|674869|organism=Nannochloropsis oceanica|type=mRNA|length=2058bp|location=Sequence derived from alignment at scaffold_60:1177..3234- (Nannochloropsis oceanica)
ACAGGACATACGCTCTCCTCCCGGCACTTAAATTCCTTTCGTGCAGCAAG
TCAGCACCACCTCCATAGACATCCATTATGCCTTCGAAGGATTCCTCACC
GTCTAAGCCATTTTTTGGCATGAAACTCTTCTCCGGCCTGTGGCGCTCGT
CCGCCTCGTCTCCGTCGCGTCGCTCCTCACAAAACCGACCAACCGTCCCT
TTTGCCTTGCAAGCCCCGTCACACTCGCCTTCGACACAGGTCCAAGCTCC
ACTGGCCTCTTCCATATCTTTTGGTGACTTCTCGCGCGTGGGCAGCACCA
TGGCGAGGGACATGACCCCCCCCCCGCTCCTCCTCGTCCTCCCCTTCGGG
TCCAATCACCCCTCCACCGCCCCTTCTGAACGTGATCCGAGCAAAGGACC
CCAAGGCATTCAAGGGCAAAGCAGCTTTGACCCGGTACCTGGATGCGATG
GACCAAGAGGAAGGCAGAGGCATACAAACGGGGGGATTACTCGCGGATCC
AACGCAGGCCTCCTCGGCCAAGCACACCGAAATCCCACCGTCCACTACAG
TAGCGAGTTAGCCAAGCAGAATTTCTCCTTTCTCCGCATCATTTTTTGCG
GGAGAAATGGGATGGGGTCCTTTTGGTTTATCAAGAAAATTCTTCCACAG
TTGGTTGTCGGCATCTTGCTCAACTTGGTTGTAGAGTGGTCGGGCCTTCG
GGAGACGGGCTGGTGGGCTGGCCGTGCTGACACGCAGCGACTGCACGGGT
TCGTTGGGGCAGTCTGGCTTTTGTCTTGGTTTTTCGGAGCAATGCTAGTT
ATGACCGCTACTATGAGGCACGCAAAACGCTGGGTCTGATTACAAACCAA
TGCCGCGAAGCGGTTCTGGAATCATGTTCCGTATTTATCGTCACAGATGA
AGGTGAGCACAACAACCTGTATAGGAACGAGATTCGCAGAAAGTTCCTGG
TCATGATAGCATTCATCCGGCAAAACATTCGCGAGTCCCACGTGGGGTTC
ATGCCCAACTCTTCCGAAAGCAATACGCCTTTCCACGAAGGCACCAACTA
CATAAGGGATCCGATCCGGCCCCGCCTGTGCGACCTGCTGACGCCTTCCG
AGGTCGAAGGTTATGTCAACGTCCAACCTTCGGCGCGCGCGGCGTGTGTG
GCCAGTGAGATCAAGGGCATTGCGCAGCTTTTGGCGCGGAACGTGGAGTT
CGGCTTTTTGTATTACAGCAAGATAAGCCAGTGTCTGCAGTTGTCTTTAG
ACTCGCAAGAGACTCTGTACCGCATCGTGACCACGCCGGTTCCTATCCCT
ACACCTGGATTCTGAATGCGATGCTGGTGGTGTTTATCTACTCCGTACCT
TTTTTGTACGAATCTAAAAGGGGTGGATCTTATTTTGGGATGATCATTTT
GGTAGTGGCGTACTTTGGGTGCCAGCGAATTGCGCAGCAGTGCGAGAATC
CCTTGGAGTGGGACGCCTGCGATCTCGACGTCGAGCTCTTGACCATGAGT
AACCATGACGACACGCGCGACATTTCCAACTTTACGCACAGCCTCAACAA
GGGCTTCATCCCCAGCAATATTCGTCGCACTGCCCCTGAGCCTCCCGCGC
CTGTCCCTGACCTGGCCACTACCACCCCTCCGGAGCCCGAAGGAGAGGCA
ACAACGCCAACCAATCCCAAGGGGGAGGCAACAACTCTGATCAAGCCCAC
GTCGTCTATGGCTGAAGAGACTGGGTCGCCCAAGTCGGCTGCGACCGCAC
CATCGTCGTCCGTGCTCGCCGATGCAAAAGTAGTGAGCCGTGAGAGTGAT
AAGTGATGATACGCACAGAAAACGAAGTTATTTTTCCTCCAAATACTTCT
CTTTTTAAATCGCCATAATGTGGTTTGCCACCAGCTTGCATGGTGATATA
TATTTTACCACATAATTAGCAACAATAAATAAATAAATAAATAGGCCCGC
CCGGCTAACCTGAACATCATCATACAGCCTTCCTTGGATCCCTCAATCAA
CAAAAAGCGCGAAGCGCGAAGCGCAAAATTAAAACAAAAACACACTAAAT
ACCATGAA
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Coding sequence (CDS) from alignment at scaffold_60:1177..3234-

>mRNA_10291 ID=mRNA_10291|Name=jgi.p|Nanoce1779_2|674869|organism=Nannochloropsis oceanica|type=CDS|length=762bp|location=Sequence derived from alignment at scaffold_60:1177..3234- (Nannochloropsis oceanica)
ATGCCTTCGAAGGATTCCTCACCGTCTAAGCCATTTTTTGGCATGAAACT
CTTCTCCGGCCTGTGGCGCTCGTCCGCCTCGTCTCCGTCGCGTCGCTCCT
CACAAAACCGACCAACCGTCCCTTTTGCCTTGCAAGCCCCGTCACACTCG
CCTTCGACACAGGTCCAAGCTCCACTGGCCTCTTCCATATCTTTTGGTGA
CTTCTCGCGCGTGGGCAGCACCATGGCGAGGGACATGACCCCCCCCCCGC
TCCTCCTCGTCCTCCCCTTCGGGTCCAATCACCCCTCCACCGCCCCTTCT
GAACGTGATCCGAGCAAAGGACCCCAAGGCATTCAAGGGCAAAGCAGCTT
TGACCCGGTACCTGGATGCGATGGACCAAGAGGAAGGCAGAGGCATACAA
ACGGGGGGATTACTCGCGGATCCAACGCAGGCCTCCTCGGCCAAGCACAC
CGAAATCCCACCGTCCACTACAGTAGCGAGTTAGCCAAGCAGAATTTCTC
CTTTCTCCGCATCATTTTTTGCGGGAGAAATGGGATGGGGTCCTTTTGGT
TTATCAAGAAAATTCTTCCACAGTTGGTTGTCGGCATCTTGCTCAACTTG
GTTGTAGAGTGGTCGGGCCTTCGGGAGACGGGCTGGTGGGCTGGCCGTGC
TGACACGCAGCGACTGCACGGGTTCGTTGGGGCAGTCTGGCTTTTGTCTT
GGTTTTTCGGAGCAATGCTAGTTATGACCGCTACTATGAGGCACGCAAAA
CGCTGGGTCTGA
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Synonyms
Publications