jgi.p|Nanoce1779_2|149295, mRNA_1029 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|149295
Unique NamemRNA_1029
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length945
Alignment locationscaffold_2:1050078..1051022 -

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Properties
Property NameValue
TranscriptId149381
TrackFilteredModels2
ProteinId149295
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1050078..1051022 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|149295gene_1029Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|149295mRNA_1029-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1029CDS_1029Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1029 ID=mRNA_1029|Name=jgi.p|Nanoce1779_2|149295|organism=Nannochloropsis oceanica|type=mRNA|length=945bp
CTGGCGGGGCGACTACGGCAGGGCGATCCGGTCTTGCCGCCGCCTGGGCT
GCATGCACAACCAATCGTGTGGGGCCACGTTATCTACCAGGCGGGCTATT
ACTTTCGATTCAAACATACTTTTCACCTTCTTGTTTCTCATGCTTTTCCT
TCCAACATACACCGACCCCCCCCCTTATCTCCCCCAGACAAGCACATAGC
ACAAAGGATCATGTCGTCAGCACCGTCCACCCCCGAAGCGCCCTCCACCA
TCTATCACCTTGCGCGAAAACAAGAATGGGAGAAGGCCGTGGCGGAAGAA
CGCGATTACTTCACCGACTCCCTTGAAAAGGAAGGCTTCACGCACGCGAC
AGCTGAGACCAAGCTCATTCTCACAATTGCTAACGCCTTCTATCAAAGCG
CGCCGGGAGACTTTGTGCTCCTAGTCATCGACACGCCCAAACTCTCGTCC
AAGGTGGTGATGGAAAAAGATGATTCGCCTTTGCCTGGCTCAGACGATCC
AGAACCTCCGACATGCCCCCACGTCTTTGGTAAGATTGAACGGGATGCTG
TCCGGGCCGTGAAGCAGGTAACGAGGGAGGCCGGAACGGGCAAGTTTCTG
AGCATTGACATAGATTAGGAAATCTGGGGGTTGGACTTTATAGCAAGAAC
GAAGCTAGCAAGACAAAAAGAAAAGGCAAAAACATAAATCTCTTTGCGGT
TCTAGGTTTTAGTTCATCTTGATTCCTTTGCGAAATGCATGAGGGCTAGA
AGGCGCCCTTCAACCTCCTGCCCACTTGGAGGTTTTGAGAAGAAGCGAAG
GGAAGGACTTCATCCAGAAACCTCACGCATATACCCACCACCGCACAACA
AGAACACGCTCCAAGACAGGCCCGTCGATGCGATCGCATTGAGCGGCAGA
ATTTCTCGCCAGTTGTCTTCAGCGAGCCATCTTCGTCACGTTTTC
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protein sequence of jgi.p|Nanoce1779_2|149295

>mRNA_1029-protein ID=mRNA_1029-protein|Name=jgi.p|Nanoce1779_2|149295|organism=Nannochloropsis oceanica|type=polypeptide|length=136bp
MSSAPSTPEAPSTIYHLARKQEWEKAVAEERDYFTDSLEKEGFTHATAET
KLILTIANAFYQSAPGDFVLLVIDTPKLSSKVVMEKDDSPLPGSDDPEPP
TCPHVFGKIERDAVRAVKQVTREAGTGKFLSIDID*
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mRNA from alignment at scaffold_2:1050078..1051022-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1029 ID=mRNA_1029|Name=jgi.p|Nanoce1779_2|149295|organism=Nannochloropsis oceanica|type=mRNA|length=945bp|location=Sequence derived from alignment at scaffold_2:1050078..1051022- (Nannochloropsis oceanica)
CTGGCGGGGCGACTACGGCAGGGCGATCCGGTCTTGCCGCCGCCTGGGCT
GCATGCACAACCAATCGTGTGGGGCCACGTTATCTACCAGGCGGGCTATT
ACTTTCGATTCAAACATACTTTTCACCTTCTTGTTTCTCATGCTTTTCCT
TCCAACATACACCGACCCCCCCCCTTATCTCCCCCAGACAAGCACATAGC
ACAAAGGATCATGTCGTCAGCACCGTCCACCCCCGAAGCGCCCTCCACCA
TCTATCACCTTGCGCGAAAACAAGAATGGGAGAAGGCCGTGGCGGAAGAA
CGCGATTACTTCACCGACTCCCTTGAAAAGGAAGGCTTCACGCACGCGAC
AGCTGAGACCAAGCTCATTCTCACAATTGCTAACGCCTTCTATCAAAGCG
CGCCGGGAGACTTTGTGCTCCTAGTCATCGACACGCCCAAACTCTCGTCC
AAGGTGGTGATGGAAAAAGATGATTCGCCTTTGCCTGGCTCAGACGATCC
AGAACCTCCGACATGCCCCCACGTCTTTGGTAAGATTGAACGGGATGCTG
TCCGGGCCGTGAAGCAGGTAACGAGGGAGGCCGGAACGGGCAAGTTTCTG
AGCATTGACATAGATTAGGAAATCTGGGGGTTGGACTTTATAGCAAGAAC
GAAGCTAGCAAGACAAAAAGAAAAGGCAAAAACATAAATCTCTTTGCGGT
TCTAGGTTTTAGTTCATCTTGATTCCTTTGCGAAATGCATGAGGGCTAGA
AGGCGCCCTTCAACCTCCTGCCCACTTGGAGGTTTTGAGAAGAAGCGAAG
GGAAGGACTTCATCCAGAAACCTCACGCATATACCCACCACCGCACAACA
AGAACACGCTCCAAGACAGGCCCGTCGATGCGATCGCATTGAGCGGCAGA
ATTTCTCGCCAGTTGTCTTCAGCGAGCCATCTTCGTCACGTTTTC
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Coding sequence (CDS) from alignment at scaffold_2:1050078..1051022-

>mRNA_1029 ID=mRNA_1029|Name=jgi.p|Nanoce1779_2|149295|organism=Nannochloropsis oceanica|type=CDS|length=408bp|location=Sequence derived from alignment at scaffold_2:1050078..1051022- (Nannochloropsis oceanica)
ATGTCGTCAGCACCGTCCACCCCCGAAGCGCCCTCCACCATCTATCACCT
TGCGCGAAAACAAGAATGGGAGAAGGCCGTGGCGGAAGAACGCGATTACT
TCACCGACTCCCTTGAAAAGGAAGGCTTCACGCACGCGACAGCTGAGACC
AAGCTCATTCTCACAATTGCTAACGCCTTCTATCAAAGCGCGCCGGGAGA
CTTTGTGCTCCTAGTCATCGACACGCCCAAACTCTCGTCCAAGGTGGTGA
TGGAAAAAGATGATTCGCCTTTGCCTGGCTCAGACGATCCAGAACCTCCG
ACATGCCCCCACGTCTTTGGTAAGATTGAACGGGATGCTGTCCGGGCCGT
GAAGCAGGTAACGAGGGAGGCCGGAACGGGCAAGTTTCTGAGCATTGACA
TAGATTAG
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Synonyms
Publications