jgi.p|Nanoce1779_2|533826, mRNA_10289 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|533826
Unique NamemRNA_10289
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1020
Alignment locationscaffold_47:157337..158356 -

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Properties
Property NameValue
TranscriptId533912
TrackFilteredModels2
ProteinId533826
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:157337..158356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533826gene_10289Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10289CDS_10289Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533826mRNA_10289-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10289 ID=mRNA_10289|Name=jgi.p|Nanoce1779_2|533826|organism=Nannochloropsis oceanica|type=mRNA|length=1020bp
ATGTGGAGTCTGTTTATCGGTGAGATTGCGCTGACCTCGCATAATTTTTC
TATCGCCATCCGTCGCGTGAGAATCCTTGACAGCCCCTTGTGCATTCGAC
GAGCTCACTCCGCCTCTTTGTCATCCCCACTACAGGTCGTTCTCTTCGCC
ATATTCAACCCCAAGTATTCCCGCGGCGTGCTCAACAACAGCAATGAAGA
AGGGATCAGCTTTTCAGTGTACGATTTTTTTTGGCGTTTATCTCAGATCG
CCACCATTTTGAGCACCTGGCTGTGGGACGTAATTATAGACTGGGGTCTC
TTCAAGAATAGGAGAGGTCTGCGTAGTAATCTTCTCTTTCGACGCCACAT
CTGGGTGTATTATATCGCTATCGTCTTGGATTTAATGCTGCGAATTGTGT
GGACGGTCTCGCTCCTCCCCCAAGCCACCGTTGGACTGCTATACAAGTTT
CAGTCTCGGATGCGCTTCTTCACCCCACTGTTAGAGTTGTTTCGCCGTTC
CGTGTGGTCTTGGCTTCGGCTAGAGCATGAACAGAGCTTGCGTGATGTGC
AGGAGGATGATACAGTGGCAGTGAGCAACGATGTTTTGCGTGAAAAGCGG
GCAAACGAGAGCAAAGCGGAGCGCACAAAACGCCTGGGAGAAATTGCCCG
CGAGGTGACGCGCCTTAGTAAGGCAGTCCAGCTCATTGAAGCTTGTACCG
AGGCAAAAACTGCGCCGAGCGGCAGAGTCCGTAGATATGCGAGAACAGGA
ACAACAACGACTGACGCCGCGTGTCCCGACCTCGATAGAACTTGTGTACC
GGAAGGGAGCAGCACAACCTGTAACCCTGGTGTGAGTAACTGGGATGAGG
ATTTTGAAGCTGAGACCGACGAGGATGACGAGGAAGACGAGGACACACTC
GTTGATGCACAAGATAACTTGCAAATGGATTTGGTCAGCTATAGAAGTGT
CATCTTGGAAGCATGTGTAGTGTTTTGTTTCTTTGTGGGGTTGGCAATCT
GGGCTGCGGGAGACCATTGA
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protein sequence of jgi.p|Nanoce1779_2|533826

>mRNA_10289-protein ID=mRNA_10289-protein|Name=jgi.p|Nanoce1779_2|533826|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MWSLFIGEIALTSHNFSIAIRRVRILDSPLCIRRAHSASLSSPLQVVLFA
IFNPKYSRGVLNNSNEEGISFSVYDFFWRLSQIATILSTWLWDVIIDWGL
FKNRRGLRSNLLFRRHIWVYYIAIVLDLMLRIVWTVSLLPQATVGLLYKF
QSRMRFFTPLLELFRRSVWSWLRLEHEQSLRDVQEDDTVAVSNDVLREKR
ANESKAERTKRLGEIAREVTRLSKAVQLIEACTEAKTAPSGRVRRYARTG
TTTTDAACPDLDRTCVPEGSSTTCNPGVSNWDEDFEAETDEDDEEDEDTL
VDAQDNLQMDLVSYRSVILEACVVFCFFVGLAIWAAGDH*
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mRNA from alignment at scaffold_47:157337..158356-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10289 ID=mRNA_10289|Name=jgi.p|Nanoce1779_2|533826|organism=Nannochloropsis oceanica|type=mRNA|length=1020bp|location=Sequence derived from alignment at scaffold_47:157337..158356- (Nannochloropsis oceanica)
ATGTGGAGTCTGTTTATCGGTGAGATTGCGCTGACCTCGCATAATTTTTC
TATCGCCATCCGTCGCGTGAGAATCCTTGACAGCCCCTTGTGCATTCGAC
GAGCTCACTCCGCCTCTTTGTCATCCCCACTACAGGTCGTTCTCTTCGCC
ATATTCAACCCCAAGTATTCCCGCGGCGTGCTCAACAACAGCAATGAAGA
AGGGATCAGCTTTTCAGTGTACGATTTTTTTTGGCGTTTATCTCAGATCG
CCACCATTTTGAGCACCTGGCTGTGGGACGTAATTATAGACTGGGGTCTC
TTCAAGAATAGGAGAGGTCTGCGTAGTAATCTTCTCTTTCGACGCCACAT
CTGGGTGTATTATATCGCTATCGTCTTGGATTTAATGCTGCGAATTGTGT
GGACGGTCTCGCTCCTCCCCCAAGCCACCGTTGGACTGCTATACAAGTTT
CAGTCTCGGATGCGCTTCTTCACCCCACTGTTAGAGTTGTTTCGCCGTTC
CGTGTGGTCTTGGCTTCGGCTAGAGCATGAACAGAGCTTGCGTGATGTGC
AGGAGGATGATACAGTGGCAGTGAGCAACGATGTTTTGCGTGAAAAGCGG
GCAAACGAGAGCAAAGCGGAGCGCACAAAACGCCTGGGAGAAATTGCCCG
CGAGGTGACGCGCCTTAGTAAGGCAGTCCAGCTCATTGAAGCTTGTACCG
AGGCAAAAACTGCGCCGAGCGGCAGAGTCCGTAGATATGCGAGAACAGGA
ACAACAACGACTGACGCCGCGTGTCCCGACCTCGATAGAACTTGTGTACC
GGAAGGGAGCAGCACAACCTGTAACCCTGGTGTGAGTAACTGGGATGAGG
ATTTTGAAGCTGAGACCGACGAGGATGACGAGGAAGACGAGGACACACTC
GTTGATGCACAAGATAACTTGCAAATGGATTTGGTCAGCTATAGAAGTGT
CATCTTGGAAGCATGTGTAGTGTTTTGTTTCTTTGTGGGGTTGGCAATCT
GGGCTGCGGGAGACCATTGA
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Coding sequence (CDS) from alignment at scaffold_47:157337..158356-

>mRNA_10289 ID=mRNA_10289|Name=jgi.p|Nanoce1779_2|533826|organism=Nannochloropsis oceanica|type=CDS|length=1020bp|location=Sequence derived from alignment at scaffold_47:157337..158356- (Nannochloropsis oceanica)
ATGTGGAGTCTGTTTATCGGTGAGATTGCGCTGACCTCGCATAATTTTTC
TATCGCCATCCGTCGCGTGAGAATCCTTGACAGCCCCTTGTGCATTCGAC
GAGCTCACTCCGCCTCTTTGTCATCCCCACTACAGGTCGTTCTCTTCGCC
ATATTCAACCCCAAGTATTCCCGCGGCGTGCTCAACAACAGCAATGAAGA
AGGGATCAGCTTTTCAGTGTACGATTTTTTTTGGCGTTTATCTCAGATCG
CCACCATTTTGAGCACCTGGCTGTGGGACGTAATTATAGACTGGGGTCTC
TTCAAGAATAGGAGAGGTCTGCGTAGTAATCTTCTCTTTCGACGCCACAT
CTGGGTGTATTATATCGCTATCGTCTTGGATTTAATGCTGCGAATTGTGT
GGACGGTCTCGCTCCTCCCCCAAGCCACCGTTGGACTGCTATACAAGTTT
CAGTCTCGGATGCGCTTCTTCACCCCACTGTTAGAGTTGTTTCGCCGTTC
CGTGTGGTCTTGGCTTCGGCTAGAGCATGAACAGAGCTTGCGTGATGTGC
AGGAGGATGATACAGTGGCAGTGAGCAACGATGTTTTGCGTGAAAAGCGG
GCAAACGAGAGCAAAGCGGAGCGCACAAAACGCCTGGGAGAAATTGCCCG
CGAGGTGACGCGCCTTAGTAAGGCAGTCCAGCTCATTGAAGCTTGTACCG
AGGCAAAAACTGCGCCGAGCGGCAGAGTCCGTAGATATGCGAGAACAGGA
ACAACAACGACTGACGCCGCGTGTCCCGACCTCGATAGAACTTGTGTACC
GGAAGGGAGCAGCACAACCTGTAACCCTGGTGTGAGTAACTGGGATGAGG
ATTTTGAAGCTGAGACCGACGAGGATGACGAGGAAGACGAGGACACACTC
GTTGATGCACAAGATAACTTGCAAATGGATTTGGTCAGCTATAGAAGTGT
CATCTTGGAAGCATGTGTAGTGTTTTGTTTCTTTGTGGGGTTGGCAATCT
GGGCTGCGGGAGACCATTGA
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Synonyms
Publications