jgi.p|Nanoce1779_2|609923, mRNA_10281 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|609923
Unique Name	mRNA_10281
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1819
Alignment location	scaffold_47:134600..136439 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	610009
Track	FilteredModels2
ProteinId	609923

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_47	supercontig	scaffold_47:134600..136439 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609923	gene_10281	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609923	mRNA_10281-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10281	CDS_10281	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_47:134600..136439+
coding sequence from alignment at scaffold_47:134600..136439+

mRNA sequence

>mRNA_10281 ID=mRNA_10281|Name=jgi.p|Nanoce1779_2|609923|organism=Nannochloropsis oceanica|type=mRNA|length=1819bp
AGCCAATAAAGGCATCGGCGGGCCATGGTGTGCTACACTCGCTGTTGTCG
CCGTCACTCTAGGTGACCTGGGCTGCTGCGCCCGTCCCTCCTTCCCTCCC
TCCGTCTTGTTTGTCGACCCCAATCCCTCCCCCATGCCCTGTCCTCCATC
CCCGGCCTGGAGGAACGGGTGCCGCAGGGCCTCGGTGGGCGTAATCCTCA
TGGCGGGATCTAGATGCAACATCTTCAAAATGAGGTCGAGGAAGGCTTGG
TAATGAGGGACAGTGTGTCCGGGGTCGTTCGCTCGTCTTCCTGACGGTCC
ACCTGTTGTGACACCGAGGATATCGGCCAGTTTGGCGTAGGGCGAGGCAG
AGGACGGGAGGTTGGAAGGGGTGGAGGAGGAGGAGGAGGAGGAGGAGGTG
CCGGGGGCCGGAACCTTGAACCGCCACGTGGAGGACGGGAAAGAGGACGG
GTTGGAAGCGAGCTCGAAGAAGTTGTCGCGGGAAGCGGCCGGGGCAGCGT
GGAGCATGCTGGAAGGAGGGAGGCCTAAAATGTCAACCAGCCGCTTCATT
TGGTCGTACTGATCCACACCACCAAACAGGGGCTCACCCGTGTGCATCTC
CACCAGGACACACCCCAAGCTCCACATATCAATGGCCACAGAATAGGGCA
ATCCGAGCATCACTTCCGGGGAGCGATAAAAACGCGATTGGATGTAAGAA
TACATGCGTTTGTGACTCCTGCATGAAGATCCAAAGTCGATGACTTTGAT
GCCGGACCGCTTGGGGTGGCGGAGCAGAATGTTCTCGGGCTTGAGATCGC
AGTGAATAATGTCCACGTCGGGCCGAGCCAGGAACTGAAGGGCCTTGAGG
ATTTGCTTTGTGAATTTCCGGAGGAGCGTCAGGGAGACACCTGCGAATTT
GGTGTATTTAAGCAGGTCGTAAAGATTGTAGGAAAGCATCTCAAAGACCA
AGCATTGGTGGCCCCGGTGGATAAAGTGATGCTGCAGACGGACTAAGTTG
AACTCGTCGTTCTTATCCTTGACTCGCAGCGTCTGCAGTAGCTCTACCTC
CGTCTTGGCCTGCAGCATGAAGGGTTTTCTGCTCTTGATGATTTTAACCG
CTACTTCTCGTCCCGTGGCACGGTCAACTCCTCGCACCACCTGCCCAAAG
CTACCCTTGCCGATCCTGTTCTTCAGCAAGTACCGGTCTTGGAGAAGCTC
GTCCCTCTCAAAGAGATAATCGTAGTGCTCGTCATCCCAGCCGTTGTTGT
AAACTCCTTTGCCAACCGTTGGTGCTGGGGCCGCGGCGGGGGCGATTGGG
GGTTGGCGGTGTGAAGATGAGTAGGACATGGAGGGGGCAGCGTGTAAGGG
AGCGGTCGAAAGGAGGGAGGCATCGGCTGTCTTTTGGGGATGGGCAAGAT
GCTGCAGAGCTCCTGCAGCGGTACTAGCAGCGCTCCCTTCACCGCTGCTG
CTGCTCTTGACGTGCTGCTCCTGCTTGGAGGAAGACGTAGATGTGGACAT
GGCCGCGGAGACCGCTGCCTCGTCTTGTTGCTGGAGTTGCCGTTGAGCTT
TTCTCTCGTAGTATTGGGTGTTGATGGCCTTATAGGTATCAATCAATTGA
ACCGAGAGACGGTTCAAAGGACGTGTGTGCGGCGGGCGGCGTCTCCTACG
TGCCCCACAGCCACCGGTGCTACCATTGCTGCTGCTGCTGCTGGTGGTGG
TGGTATATGTGGCTGTGTCTGCCTCTGCTGTTCCTGCTGCTAGCGTGCCT
TGCAAATGCTCCACGGCGGCGGCTCCAGCCCCCGTTGGTGCACGCTGCTG
CTCCTGCTGCTGCTGCTTC

protein sequence of jgi.p|Nanoce1779_2|609923

>mRNA_10281-protein ID=mRNA_10281-protein|Name=jgi.p|Nanoce1779_2|609923|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MGKMLQSSCSGTSSAPFTAAAALDVLLLLGGRRRCGHGRGDRCLVLLLEL
PLSFSLVVLGVDGLIGINQLNRETVQRTCVRRAASPTCPTATGATIAAAA
AGGGGICGCVCLCCSCC*

mRNA from alignment at scaffold_47:134600..136439+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10281 ID=mRNA_10281|Name=jgi.p|Nanoce1779_2|609923|organism=Nannochloropsis oceanica|type=mRNA|length=1840bp|location=Sequence derived from alignment at scaffold_47:134600..136439+ (Nannochloropsis oceanica)
AGCCAATAAAGGCATCGGCGGGCCATGGTGTGCTACACTCGCTGTTGTCG
CCGTCACTCTAGGTGACCTGGGCTGCTGCGCCCGTCCCTCCTTCCCTCCC
TCCGTCTTGTTTGTCGACCCCAATCCCTCCCCCATGCCCTGTCCTCCATC
CCCGGCCTGGAGGAACGGGTGCCGCAGGGCCTCGGTGGGCGTAATCCTCA
TGGCGGGATCTAGATGCAACATCTTCAAAATGAGGTCGAGGAAGGCTTGG
TAATGAGGGACAGTGTGTCCGGGGTCGTTCGCTCGTCTTCCTGACGGTCC
ACCTGTTGTGACACCGAGGATATCGGCCAGTTTGGCGTAGGGCGAGGCAG
AGGACGGGAGGTTGGAAGGGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGTGCCGGGGGCCGGAACCTTGAACCGCCACGT
GGAGGACGGGAAAGAGGACGGGTTGGAAGCGAGCTCGAAGAAGTTGTCGC
GGGAAGCGGCCGGGGCAGCGTGGAGCATGCTGGAAGGAGGGAGGCCTAAA
ATGTCAACCAGCCGCTTCATTTGGTCGTACTGATCCACACCACCAAACAG
GGGCTCACCCGTGTGCATCTCCACCAGGACACACCCCAAGCTCCACATAT
CAATGGCCACAGAATAGGGCAATCCGAGCATCACTTCCGGGGAGCGATAA
AAACGCGATTGGATGTAAGAATACATGCGTTTGTGACTCCTGCATGAAGA
TCCAAAGTCGATGACTTTGATGCCGGACCGCTTGGGGTGGCGGAGCAGAA
TGTTCTCGGGCTTGAGATCGCAGTGAATAATGTCCACGTCGGGCCGAGCC
AGGAACTGAAGGGCCTTGAGGATTTGCTTTGTGAATTTCCGGAGGAGCGT
CAGGGAGACACCTGCGAATTTGGTGTATTTAAGCAGGTCGTAAAGATTGT
AGGAAAGCATCTCAAAGACCAAGCATTGGTGGCCCCGGTGGATAAAGTGA
TGCTGCAGACGGACTAAGTTGAACTCGTCGTTCTTATCCTTGACTCGCAG
CGTCTGCAGTAGCTCTACCTCCGTCTTGGCCTGCAGCATGAAGGGTTTTC
TGCTCTTGATGATTTTAACCGCTACTTCTCGTCCCGTGGCACGGTCAACT
CCTCGCACCACCTGCCCAAAGCTACCCTTGCCGATCCTGTTCTTCAGCAA
GTACCGGTCTTGGAGAAGCTCGTCCCTCTCAAAGAGATAATCGTAGTGCT
CGTCATCCCAGCCGTTGTTGTAAACTCCTTTGCCAACCGTTGGTGCTGGG
GCCGCGGCGGGGGCGATTGGGGGTTGGCGGTGTGAAGATGAGTAGGACAT
GGAGGGGGCAGCGTGTAAGGGAGCGGTCGAAAGGAGGGAGGCATCGGCTG
TCTTTTGGGGATGGGCAAGATGCTGCAGAGCTCCTGCAGCGGTACTAGCA
GCGCTCCCTTCACCGCTGCTGCTGCTCTTGACGTGCTGCTCCTGCTTGGA
GGAAGACGTAGATGTGGACATGGCCGCGGAGACCGCTGCCTCGTCTTGTT
GCTGGAGTTGCCGTTGAGCTTTTCTCTCGTAGTATTGGGTGTTGATGGCC
TTATAGGTATCAATCAATTGAACCGAGAGACGGTTCAAAGGACGTGTGTG
CGGCGGGCGGCGTCTCCTACGTGCCCCACAGCCACCGGTGCTACCATTGC
TGCTGCTGCTGCTGGTGGTGGTGGTATATGTGGCTGTGTCTGCCTCTGCT
GTTCCTGCTGCTAGCGTGCCTTGCAAATGCTCCACGGCGGCGGCTCCAGC
CCCCGTTGGTGCACGCTGCTGCTCCTGCTGCTGCTGCTTC

Coding sequence (CDS) from alignment at scaffold_47:134600..136439+

>mRNA_10281 ID=mRNA_10281|Name=jgi.p|Nanoce1779_2|609923|organism=Nannochloropsis oceanica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_47:134600..136439+ (Nannochloropsis oceanica)
ATGGGCAAGATGCTGCAGAGCTCCTGCAGCGGTACTAGCAGCGCTCCCTT
CACCGCTGCTGCTGCTCTTGACGTGCTGCTCCTGCTTGGAGGAAGACGTA
GATGTGGACATGGCCGCGGAGACCGCTGCCTCGTCTTGTTGCTGGAGTTG
CCGTTGAGCTTTTCTCTCGTAGTATTGGGTGTTGATGGCCTTATAGGTAT
CAATCAATTGAACCGAGAGACGGTTCAAAGGACGTGTGTGCGGCGGGCGG
CGTCTCCTACGTGCCCCACAGCCACCGGTGCTACCATTGCTGCTGCTGCT
GCTGGTGGTGGTGGTATATGTGGCTGTGTCTGCCTCTGCTGTTCCTGCTG
CTAG

Synonyms

Publications