jgi.p|Nanoce1779_2|609921, mRNA_10279 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|609921
Unique Name	mRNA_10279
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2085
Alignment location	scaffold_47:132540..134624 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	610007
Track	FilteredModels2
ProteinId	609921

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_47	supercontig	scaffold_47:132540..134624 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609921	gene_10279	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609921	mRNA_10279-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10279	CDS_10279	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_47:132540..134624+
coding sequence from alignment at scaffold_47:132540..134624+

mRNA sequence

>mRNA_10279 ID=mRNA_10279|Name=jgi.p|Nanoce1779_2|609921|organism=Nannochloropsis oceanica|type=mRNA|length=2085bp
TCCCTCGCATCCATCTCTGATTTGGCTTTTTCGTTTCCTTGCACGAATCT
CCTTCCCTTTTTTTACATGTCGATTGTTAAGGGTACATGAATTTATTTAT
AAACAGGTAGATTAAGATAAAATAATATATAAATATGAAATATGAAATTA
AATAAATAAATGTTCTTACCCATGCCATAGTGCAGCACAGCTTCCTCCAG
CCTGTATATCAAAGGCTCAGTCCGCAACACGGCACGATCATACGACCTGA
AAGGCACCTAAAGAATTCCATGTACGTATATTTATAATATCGATCAAAGG
AGTAAGCCTTCTCTTATTCCTCTCTTTCTATATTTCCTTCTCACCCTCCG
TCCTCCCCTCCCTTCGCAGTGGTTCGTTACCTCCTGCATCACTTCCAAGT
CGTCCGTTGTGAGAGTTGGCACGGCTGCCTTCATTTTCTTTGCGGTCTCG
GGCTTAAGGTGTGCCTGACGGTAGAAGAGCTTCGGGGATGACGGAGGGAG
AGAGAAAGAAAGGGAGGAAGGGAGGAAGGGAGGACGGGAGGAAGAGAGAA
GAGAGGGAGTGAGGTAGGAAAGGGTGAGTGCTGTTGCTCGCCAATGTTCT
GAGACCGCTCATAAAATTTGGAGATTGTGTCTAAGCGTGGTCACATTTGG
CCGTTAACGACAAAATGAGCAAGCGTTTCAACGCCGCTCTCCTCCCCTTT
CCTACCTACCTGGGCGACATAGGCATTTGTCAAACCCGTCTCGACCGCAA
TTTCGTCGAATGTTAAGCCTGCCTTTTTCTTGGCTGCTAACAGGTTAGAT
ACATGGAAGGCTTTGTCTTCCTCTGCAAAGGCTGTGGCGAGACGACGGGT
TGCGTTGCTGGTGGTGGGAAGGAGGGACGGACGGAGAGAGGACGAGGACA
CATGACGAGACACGGCAAGGCGGAAGGATGACAACATTTATGTTACTTGA
GACACTTTATTGAATACGATTGATAAGAGGTTATGTTTCTGTGTTGTTAC
GGGAGGATGGGCGGGCAGAGAGGTTAAATGCCTTGTAGAACGAGAGTATC
TTAAGCATTGCTGGGGGGGGGGGGAAAATTCCTTTGAAAGGCTGGCATGC
CGCAGACATTGTAGAAAAGCGCAAAGAACACAAACAGTTATCCGTTGATG
AGATTTTGCGTTTGATTTTGGCGTAATTGTATGTCGAAGGAGAGAGATAC
ACAGAACAGACGAGCATTGAAAAGTAGGCAGGACGTTGACGAGCTCCGTC
CACGGCCGAGCAATCCATCCACCAAGACAAGTCAACGCAAGCGGGGGGCA
TGAGAAAGGCGACTGCAAGGTAATGATGCTGCTAATGCCATTGCTAGTGT
CATCGCACACTGTCCATGCAAGTGGTAAGAAAGGAAGGGGAAGAGCCACT
TGTTCGTCCCATCGCCGTAATCCCATGAATTACTCGCTCTTCCCGTACGC
CCCCATACGTCCCACTTATACTACAAGGAACGAAGCAAAAAAAAAAGTCT
TCGCTTTTCTTGAGGACGTTCTTCTTTGTGATTATATATTCTGTCTCCAA
GAGACAAAATGGACGAATGGTCTACTTTCCCCTTCTCTGTATCCCTTCCT
CCCACCATTCTCTTCTCGATTGAAAGCACATAGTAGACGAATTACTCGAT
TCACAATACTACTACTGCACACACGCCACACACACCTACCGCACACAAAT
CTCCTCCCACCCACATAACTTCATTCAGGTCCCGCTGATGATGACGGACG
TTTATAATACGCCTATCTCTCTTTGGCACTTCAAAAGCGTCATACCTTTC
CTCCACACCCATATCCATAGATGGGATCAGAACAGGCATTTTGTCTCTAC
TCTCTCTGTCCTTTTGTTCTCAATCCTCCATCCCCTCCCCCCCTCTCTCT
TTTTTCTTCTTATCCTGTTGCTGAGGTTAATATGTGTGAAAATGAAAGAA
CAAATAAATGAGTACGTCTACAGTACATATATATAGCCCTACACTGCTAC
TCTATACTTATTCATCTGCTTCCCTCCCTACGTCTGCGTCCCCGCATCCA
ACGCCGAAGAAGCCAATAAAGGCATCGGCGGGCCA

protein sequence of jgi.p|Nanoce1779_2|609921

>mRNA_10279-protein ID=mRNA_10279-protein|Name=jgi.p|Nanoce1779_2|609921|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MMLLMPLLVSSHTVHASGKKGRGRATCSSHRRNPMNYSLFPYAPIRPTYT
TRNEAKKKVFAFLEDVLLCDYIFCLQETKWTNGLLSPSLYPFLPPFSSRL
KAHSRRITRFTILLLHTRHTHLPHTNLLPPT*

mRNA from alignment at scaffold_47:132540..134624+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10279 ID=mRNA_10279|Name=jgi.p|Nanoce1779_2|609921|organism=Nannochloropsis oceanica|type=mRNA|length=2085bp|location=Sequence derived from alignment at scaffold_47:132540..134624+ (Nannochloropsis oceanica)
TCCCTCGCATCCATCTCTGATTTGGCTTTTTCGTTTCCTTGCACGAATCT
CCTTCCCTTTTTTTACATGTCGATTGTTAAGGGTACATGAATTTATTTAT
AAACAGGTAGATTAAGATAAAATAATATATAAATATGAAATATGAAATTA
AATAAATAAATGTTCTTACCCATGCCATAGTGCAGCACAGCTTCCTCCAG
CCTGTATATCAAAGGCTCAGTCCGCAACACGGCACGATCATACGACCTGA
AAGGCACCTAAAGAATTCCATGTACGTATATTTATAATATCGATCAAAGG
AGTAAGCCTTCTCTTATTCCTCTCTTTCTATATTTCCTTCTCACCCTCCG
TCCTCCCCTCCCTTCGCAGTGGTTCGTTACCTCCTGCATCACTTCCAAGT
CGTCCGTTGTGAGAGTTGGCACGGCTGCCTTCATTTTCTTTGCGGTCTCG
GGCTTAAGGTGTGCCTGACGGTAGAAGAGCTTCGGGGATGACGGAGGGAG
AGAGAAAGAAAGGGAGGAAGGGAGGAAGGGAGGACGGGAGGAAGAGAGAA
GAGAGGGAGTGAGGTAGGAAAGGGTGAGTGCTGTTGCTCGCCAATGTTCT
GAGACCGCTCATAAAATTTGGAGATTGTGTCTAAGCGTGGTCACATTTGG
CCGTTAACGACAAAATGAGCAAGCGTTTCAACGCCGCTCTCCTCCCCTTT
CCTACCTACCTGGGCGACATAGGCATTTGTCAAACCCGTCTCGACCGCAA
TTTCGTCGAATGTTAAGCCTGCCTTTTTCTTGGCTGCTAACAGGTTAGAT
ACATGGAAGGCTTTGTCTTCCTCTGCAAAGGCTGTGGCGAGACGACGGGT
TGCGTTGCTGGTGGTGGGAAGGAGGGACGGACGGAGAGAGGACGAGGACA
CATGACGAGACACGGCAAGGCGGAAGGATGACAACATTTATGTTACTTGA
GACACTTTATTGAATACGATTGATAAGAGGTTATGTTTCTGTGTTGTTAC
GGGAGGATGGGCGGGCAGAGAGGTTAAATGCCTTGTAGAACGAGAGTATC
TTAAGCATTGCTGGGGGGGGGGGGAAAATTCCTTTGAAAGGCTGGCATGC
CGCAGACATTGTAGAAAAGCGCAAAGAACACAAACAGTTATCCGTTGATG
AGATTTTGCGTTTGATTTTGGCGTAATTGTATGTCGAAGGAGAGAGATAC
ACAGAACAGACGAGCATTGAAAAGTAGGCAGGACGTTGACGAGCTCCGTC
CACGGCCGAGCAATCCATCCACCAAGACAAGTCAACGCAAGCGGGGGGCA
TGAGAAAGGCGACTGCAAGGTAATGATGCTGCTAATGCCATTGCTAGTGT
CATCGCACACTGTCCATGCAAGTGGTAAGAAAGGAAGGGGAAGAGCCACT
TGTTCGTCCCATCGCCGTAATCCCATGAATTACTCGCTCTTCCCGTACGC
CCCCATACGTCCCACTTATACTACAAGGAACGAAGCAAAAAAAAAAGTCT
TCGCTTTTCTTGAGGACGTTCTTCTTTGTGATTATATATTCTGTCTCCAA
GAGACAAAATGGACGAATGGTCTACTTTCCCCTTCTCTGTATCCCTTCCT
CCCACCATTCTCTTCTCGATTGAAAGCACATAGTAGACGAATTACTCGAT
TCACAATACTACTACTGCACACACGCCACACACACCTACCGCACACAAAT
CTCCTCCCACCCACATAACTTCATTCAGGTCCCGCTGATGATGACGGACG
TTTATAATACGCCTATCTCTCTTTGGCACTTCAAAAGCGTCATACCTTTC
CTCCACACCCATATCCATAGATGGGATCAGAACAGGCATTTTGTCTCTAC
TCTCTCTGTCCTTTTGTTCTCAATCCTCCATCCCCTCCCCCCCTCTCTCT
TTTTTCTTCTTATCCTGTTGCTGAGGTTAATATGTGTGAAAATGAAAGAA
CAAATAAATGAGTACGTCTACAGTACATATATATAGCCCTACACTGCTAC
TCTATACTTATTCATCTGCTTCCCTCCCTACGTCTGCGTCCCCGCATCCA
ACGCCGAAGAAGCCAATAAAGGCATCGGCGGGCCA

Coding sequence (CDS) from alignment at scaffold_47:132540..134624+

>mRNA_10279 ID=mRNA_10279|Name=jgi.p|Nanoce1779_2|609921|organism=Nannochloropsis oceanica|type=CDS|length=396bp|location=Sequence derived from alignment at scaffold_47:132540..134624+ (Nannochloropsis oceanica)
ATGATGCTGCTAATGCCATTGCTAGTGTCATCGCACACTGTCCATGCAAG
TGGTAAGAAAGGAAGGGGAAGAGCCACTTGTTCGTCCCATCGCCGTAATC
CCATGAATTACTCGCTCTTCCCGTACGCCCCCATACGTCCCACTTATACT
ACAAGGAACGAAGCAAAAAAAAAAGTCTTCGCTTTTCTTGAGGACGTTCT
TCTTTGTGATTATATATTCTGTCTCCAAGAGACAAAATGGACGAATGGTC
TACTTTCCCCTTCTCTGTATCCCTTCCTCCCACCATTCTCTTCTCGATTG
AAAGCACATAGTAGACGAATTACTCGATTCACAATACTACTACTGCACAC
ACGCCACACACACCTACCGCACACAAATCTCCTCCCACCCACATAA

Synonyms

Publications