jgi.p|Nanoce1779_2|609917, mRNA_10278 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|609917
Unique Name	mRNA_10278
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	853
Alignment location	scaffold_47:130832..133531 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	610003
Track	FilteredModels2
ProteinId	609917

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_47	supercontig	scaffold_47:130832..133531 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609917	gene_10278	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609917	mRNA_10278-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10278	CDS_10278	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_47:130832..133531-
coding sequence from alignment at scaffold_47:130832..133531-

mRNA sequence

>mRNA_10278 ID=mRNA_10278|Name=jgi.p|Nanoce1779_2|609917|organism=Nannochloropsis oceanica|type=mRNA|length=853bp
ACAGAAACATAACCTCTTATCAATCGTATTCAATAAAGTGTCTCAAGTAA
CATAAATGTTGTCATCCTTCCGCCTTGCCGTGTCTCGTCATGTGTCCTCG
TCCTCTCTCCGTCCGTCCCTCCTTCCCACCACCAGCAACGCAACCCGTCG
TCTCGCCACAGCCTTTGCAGAGGAAGACAAAGCCTTCCATGTATCTAACC
TGTTAGCAGCCAAGAAAAAGGCAGGCTTAACATTCGACGAAATTGCGGTC
GAGACGGGTTTGACAAATGCCTATGTCGCCCAGCTCTTCTACCGTCAGGC
ACACCTTAAGCCCGAGACCGCAAAGAAAATGAAGGCAGCCGTGCCAACTC
TCACAACGGACGACTTGGAAGTGATGCAGGAGGTGCCTTTCAGGTCGTAT
GATCGTGCCGTGTTGCGGACTGAGCCTTTGATATACAGGCTGGAGGAAGC
TGTGCTGCACTATGGCATGGGGATCAAGGCCATCGTGAACGAAAAATTCG
GGGATGGGATCATGTCCGCGATTGACATGTACGCCACCGTCGAGAAAGTC
AAGGGCTCGCAAGGCGAGGACCGAGTTTTGGTGACCCTGAATGGGAAATT
TTTGCCCCATGTGGAGCAAAGGGTTGAGAACAATGTGCAGGCACCGGTGG
TCGAGGAGGGGGGGGTTAAAAAAACAACGCGATAGTAGCAGCCGTAGGAG
TAGCAGCAACCTTCCGGGAATGAAGGGAGGAAGGAAGGAGGAGGAGGGAG
GGAGGGAAGGAGGGAGTGAAGGAGGAGTACCTCTGGACGGTAGTCAGGAT
GTGAAGTAGAGGCAAGGACGCGGTAAGGAAATCAAGAGTAGAGATAGGAA
AAG

protein sequence of jgi.p|Nanoce1779_2|609917

>mRNA_10278-protein ID=mRNA_10278-protein|Name=jgi.p|Nanoce1779_2|609917|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MLSSFRLAVSRHVSSSSLRPSLLPTTSNATRRLATAFAEEDKAFHVSNLL
AAKKKAGLTFDEIAVETGLTNAYVAQLFYRQAHLKPETAKKMKAAVPTLT
TDDLEVMQEVPFRSYDRAVLRTEPLIYRLEEAVLHYGMGIKAIVNEKFGD
GIMSAIDMYATVEKVKGSQGEDRVLVTLNGKFLPHVEQRVENNVQAPVVE
EGGVKKTTR*

mRNA from alignment at scaffold_47:130832..133531-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10278 ID=mRNA_10278|Name=jgi.p|Nanoce1779_2|609917|organism=Nannochloropsis oceanica|type=mRNA|length=2700bp|location=Sequence derived from alignment at scaffold_47:130832..133531- (Nannochloropsis oceanica)
ACAGAAACATAACCTCTTATCAATCGTATTCAATAAAGTGTCTCAAGTAA
CATAAATGTTGTCATCCTTCCGCCTTGCCGTGTCTCGTCATGTGTCCTCG
TCCTCTCTCCGTCCGTCCCTCCTTCCCACCACCAGCAACGCAACCCGTCG
TCTCGCCACAGCCTTTGCAGAGGAAGACAAAGCCTTCCATGTATCTAACC
TGTTAGCAGCCAAGAAAAAGGCAGGCTTAACATTCGACGAAATTGCGGTC
GAGACGGGTTTGACAAATGCCTATGTCGCCCAGGTAGGTAGGAAAGGGGA
GGAGAGCGGCGTTGAAACGCTTGCTCATTTTGTCGTTAACGGCCAAATGT
GACCACGCTTAGACACAATCTCCAAATTTTATGAGCGGTCTCAGAACATT
GGCGAGCAACAGCACTCACCCTTTCCTACCTCACTCCCTCTCTTCTCTCT
TCCTCCCGTCCTCCCTTCCTCCCTTCCTCCCTTTCTTTCTCTCTCCCTCC
GTCATCCCCGAAGCTCTTCTACCGTCAGGCACACCTTAAGCCCGAGACCG
CAAAGAAAATGAAGGCAGCCGTGCCAACTCTCACAACGGACGACTTGGAA
GTGATGCAGGAGGTAACGAACCACTGCGAAGGGAGGGGAGGACGGAGGGT
GAGAAGGAAATATAGAAAGAGAGGAATAAGAGAAGGCTTACTCCTTTGAT
CGATATTATAAATATACGTACATGGAATTCTTTAGGTGCCTTTCAGGTCG
TATGATCGTGCCGTGTTGCGGACTGAGCCTTTGATATACAGGCTGGAGGA
AGCTGTGCTGCACTATGGCATGGGTAAGAACATTTATTTATTTAATTTCA
TATTTCATATTTATATATTATTTTATCTTAATCTACCTGTTTATAAATAA
ATTCATGTACCCTTAACAATCGACATGTAAAAAAAGGGAAGGAGATTCGT
GCAAGGAAACGAAAAAGCCAAATCAGAGATGGATGCGAGGGAGGGGAAGA
GGAAGGGAGGGGAAGAGGGGAAGAGGGAGCGAGGGATAGAAAGAGGTCGG
GAGGAAAGCATACTCCAAAAGTGTTTTACACAATGACCGGTCTTCCCGGT
CGTTGACACTGTGCATTTCCTCCCTATCTTCCTCTCCTCTCCTGCTTTCC
TTTCCTCTCTCTTCACCCTTTCTTTTCTCCTTCCCTCCCTCCCTCCTTGA
TGACACACTTTTGCGTGCACCAAGAAGAGTACTTAAGTAATTGGTGGGCA
TGCCCCTTTGAGCGCGGATCAGGCCTATATCTATTTCTCCATCCTCATTA
CGTATCCATATCTCCCGTATCTTCCCTTCTTATTCCTCCCTCCCTCCTCT
TGTTCTGCCTCCTCCCTCCTTTTTACCGTCCTTTTCTGTTCTGATGTAAG
ATATATGTAAATATCATGACTGTCATATATCTCCTTTCCGCGCGCCCTTT
TTCGGTCAAAAAGGCACAGCTCACACGCATGCGCATGCGTCGGGAGCGGG
AGGTGGTGGGACTACCATGCGATTCCATGCTCCGCCTTCCCTGTGTGCCG
TACGATACACCCTGTGTGCCGTACGATACATATGTATATATATATATACA
TAAGCAACCATATAACATGGTATATATGGTTGCTTATATATATATATATA
TACATAAGCAGCTATATAACATGAACAAACCAATAAATCGATAAATATAT
ATATACACATACAAGCAACCATATAACATGAATAAATCGACAAATGAATA
AATAAACAGATAAACTTATATGTAGACACCGGAGTAAACAATGCAGGCCA
TGATTAGACTCGAATGACTTTTCAATTACCCAAGGCGGGGGCAAAAAGCC
TATCACCGACGTGCGGGACCAATTAATAACTACACTTGAACTGAGCCGCT
TCCGACTACATGCATGCACGAGGGAGGGAAGGAGGAAGGGAGAAATGACA
TTATTGCGTACATGCACGAGGGAGGGAAGGAGGAAAAGAGAAGATAAGTG
GAACAGGACCTTCCTCTGACAGAACGCTCACTTTCACCGTCTTCCTTCAT
CTCATTCTCTCGATTTATACAAACAGGGATCAAGGCCATCGTGAACGAAA
AATTCGGGGATGGTACGTCCTTTCGGGCATGGGGATGCTTTCCCTCCCTC
CCTCCCTCCCTCCTCCCATCCCCCCCCTCCCTCTCTCCCTCCCTCCCTCC
CTCCCTCCAATCCTTCCTTCTCTTACTCGCCCTTGACCTCCCACCCCCCC
CACACTCTCTCTTTTACTTTCTATTACAAAAAATGAAACATGATTGTGTT
TCATCCCCTTTCCTTCCCCTCCCTCCCCTCCCTCCTCTTCGCCCTGCCCT
CAGGGATCATGTCCGCGATTGACATGTACGCCACCGTCGAGAAAGTCAAG
GGCTCGCAAGGCGAGGACCGAGTTTTGGTGACCCTGAATGGGAAATTTTT
GCCCCATGTGGAGCAAAGGGTTGAGAACAATGTGCAGGCACCGGTGGTCG
AGGAGGGGGGGGTTAAAAAAACAACGCGATAGTAGCAGCCGTAGGAGTAG
CAGCAACCTTCCGGGAATGAAGGGAGGAAGGAAGGAGGAGGAGGGAGGGA
GGGAAGGAGGGAGTGAAGGAGGAGTACCTCTGGACGGTAGTCAGGATGTG
AAGTAGAGGCAAGGACGCGGTAAGGAAATCAAGAGTAGAGATAGGAAAAG

Coding sequence (CDS) from alignment at scaffold_47:130832..133531-

>mRNA_10278 ID=mRNA_10278|Name=jgi.p|Nanoce1779_2|609917|organism=Nannochloropsis oceanica|type=CDS|length=3150bp|location=Sequence derived from alignment at scaffold_47:130832..133531- (Nannochloropsis oceanica)
GGATCATGTCCGCGATTGACATGTACGCCACCGTCGAGAAAGTCAAGGGC
TCGCAAGGCGAGGACCGAGTTTTGGTGACCCTGAATGGGAAATTTTTGCC
CCATGTGGAGCAAAGGGTTGAGAACAATGTGCAGGCACCGGTGGTCGAGG
AGGGGGGGGTTAAAAAAACAACGCGATAGGGATCAAGGCCATCGTGAACG
AAAAATTCGGGGATGGTGCCTTTCAGGTCGTATGATCGTGCCGTGTTGCG
GACTGAGCCTTTGATATACAGGCTGGAGGAAGCTGTGCTGCACTATGGCA
TGGCTCTTCTACCGTCAGGCACACCTTAAGCCCGAGACCGCAAAGAAAAT
GAAGGCAGCCGTGCCAACTCTCACAACGGACGACTTGGAAGTGATGCAGG
AGATGTTGTCATCCTTCCGCCTTGCCGTGTCTCGTCATGTGTCCTCGTCC
TCTCTCCGTCCGTCCCTCCTTCCCACCACCAGCAACGCAACCCGTCGTCT
CGCCACAGCCTTTGCAGAGGAAGACAAAGCCTTCCATGTATCTAACCTGT
TAGCAGCCAAGAAAAAGGCAGGCTTAACATTCGACGAAATTGCGGTCGAG
ACGGGTTTGACAAATGCCTATGTCGCCCAGGGATCATGTCCGCGATTGAC
ATGTACGCCACCGTCGAGAAAGTCAAGGGCTCGCAAGGCGAGGACCGAGT
TTTGGTGACCCTGAATGGGAAATTTTTGCCCCATGTGGAGCAAAGGGTTG
AGAACAATGTGCAGGCACCGGTGGTCGAGGAGGGGGGGGTTAAAAAAACA
ACGCGATAGGGATCAAGGCCATCGTGAACGAAAAATTCGGGGATGGTGCC
TTTCAGGTCGTATGATCGTGCCGTGTTGCGGACTGAGCCTTTGATATACA
GGCTGGAGGAAGCTGTGCTGCACTATGGCATGGCTCTTCTACCGTCAGGC
ACACCTTAAGCCCGAGACCGCAAAGAAAATGAAGGCAGCCGTGCCAACTC
TCACAACGGACGACTTGGAAGTGATGCAGGAGATGTTGTCATCCTTCCGC
CTTGCCGTGTCTCGTCATGTGTCCTCGTCCTCTCTCCGTCCGTCCCTCCT
TCCCACCACCAGCAACGCAACCCGTCGTCTCGCCACAGCCTTTGCAGAGG
AAGACAAAGCCTTCCATGTATCTAACCTGTTAGCAGCCAAGAAAAAGGCA
GGCTTAACATTCGACGAAATTGCGGTCGAGACGGGTTTGACAAATGCCTA
TGTCGCCCAGGGATCATGTCCGCGATTGACATGTACGCCACCGTCGAGAA
AGTCAAGGGCTCGCAAGGCGAGGACCGAGTTTTGGTGACCCTGAATGGGA
AATTTTTGCCCCATGTGGAGCAAAGGGTTGAGAACAATGTGCAGGCACCG
GTGGTCGAGGAGGGGGGGGTTAAAAAAACAACGCGATAGGGATCAAGGCC
ATCGTGAACGAAAAATTCGGGGATGGTGCCTTTCAGGTCGTATGATCGTG
CCGTGTTGCGGACTGAGCCTTTGATATACAGGCTGGAGGAAGCTGTGCTG
CACTATGGCATGGCTCTTCTACCGTCAGGCACACCTTAAGCCCGAGACCG
CAAAGAAAATGAAGGCAGCCGTGCCAACTCTCACAACGGACGACTTGGAA
GTGATGCAGGAGATGTTGTCATCCTTCCGCCTTGCCGTGTCTCGTCATGT
GTCCTCGTCCTCTCTCCGTCCGTCCCTCCTTCCCACCACCAGCAACGCAA
CCCGTCGTCTCGCCACAGCCTTTGCAGAGGAAGACAAAGCCTTCCATGTA
TCTAACCTGTTAGCAGCCAAGAAAAAGGCAGGCTTAACATTCGACGAAAT
TGCGGTCGAGACGGGTTTGACAAATGCCTATGTCGCCCAGGGATCATGTC
CGCGATTGACATGTACGCCACCGTCGAGAAAGTCAAGGGCTCGCAAGGCG
AGGACCGAGTTTTGGTGACCCTGAATGGGAAATTTTTGCCCCATGTGGAG
CAAAGGGTTGAGAACAATGTGCAGGCACCGGTGGTCGAGGAGGGGGGGGT
TAAAAAAACAACGCGATAGGGATCAAGGCCATCGTGAACGAAAAATTCGG
GGATGGTGCCTTTCAGGTCGTATGATCGTGCCGTGTTGCGGACTGAGCCT
TTGATATACAGGCTGGAGGAAGCTGTGCTGCACTATGGCATGGCTCTTCT
ACCGTCAGGCACACCTTAAGCCCGAGACCGCAAAGAAAATGAAGGCAGCC
GTGCCAACTCTCACAACGGACGACTTGGAAGTGATGCAGGAGATGTTGTC
ATCCTTCCGCCTTGCCGTGTCTCGTCATGTGTCCTCGTCCTCTCTCCGTC
CGTCCCTCCTTCCCACCACCAGCAACGCAACCCGTCGTCTCGCCACAGCC
TTTGCAGAGGAAGACAAAGCCTTCCATGTATCTAACCTGTTAGCAGCCAA
GAAAAAGGCAGGCTTAACATTCGACGAAATTGCGGTCGAGACGGGTTTGA
CAAATGCCTATGTCGCCCAGGGATCATGTCCGCGATTGACATGTACGCCA
CCGTCGAGAAAGTCAAGGGCTCGCAAGGCGAGGACCGAGTTTTGGTGACC
CTGAATGGGAAATTTTTGCCCCATGTGGAGCAAAGGGTTGAGAACAATGT
GCAGGCACCGGTGGTCGAGGAGGGGGGGGTTAAAAAAACAACGCGATAGG
GATCAAGGCCATCGTGAACGAAAAATTCGGGGATGGTGCCTTTCAGGTCG
TATGATCGTGCCGTGTTGCGGACTGAGCCTTTGATATACAGGCTGGAGGA
AGCTGTGCTGCACTATGGCATGGCTCTTCTACCGTCAGGCACACCTTAAG
CCCGAGACCGCAAAGAAAATGAAGGCAGCCGTGCCAACTCTCACAACGGA
CGACTTGGAAGTGATGCAGGAGATGTTGTCATCCTTCCGCCTTGCCGTGT
CTCGTCATGTGTCCTCGTCCTCTCTCCGTCCGTCCCTCCTTCCCACCACC
AGCAACGCAACCCGTCGTCTCGCCACAGCCTTTGCAGAGGAAGACAAAGC
CTTCCATGTATCTAACCTGTTAGCAGCCAAGAAAAAGGCAGGCTTAACAT
TCGACGAAATTGCGGTCGAGACGGGTTTGACAAATGCCTATGTCGCCCAG

Synonyms

Publications