jgi.p|Nanoce1779_2|575064, mRNA_1027 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575064
Unique NamemRNA_1027
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1282
Alignment locationscaffold_2:1044210..1045503 +

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Properties
Property NameValue
TranscriptId575150
TrackFilteredModels2
ProteinId575064
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1044210..1045503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575064gene_1027Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575064mRNA_1027-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1027CDS_1027Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1027 ID=mRNA_1027|Name=jgi.p|Nanoce1779_2|575064|organism=Nannochloropsis oceanica|type=mRNA|length=1282bp
CAAGAAGGACGAGCAATGAATATTATGATGAGGAACGGGCGAAGTTGCTA
AAAAGGGAAGAAGGAGAAGTAACAGCAGTAGAACAAGGAGGAGGAGGAGG
AGGAGGAGGGGAGGAAGATCTGGATGATTTGCTGGATATGGGAGGGACGG
CCGAGTTGAAGGGTGGAGGTGCCTCTCCCTCATCTGCTGCTTCGTCGACT
TTGCCTGCTGAAGTGAAAGAAGAGGGAGGAGGGAGGAAGGAAGAGGGTGT
GAAGAAGCCGCGTCGTCGCAAGATCTCTGAGGATGGCGGGTCTGGAGGGA
TTGAGGAAGAGGTGGTGGGAAAAGGCGACACAAATGTCGAGATTCAACCG
TCTTGGGGTTGCAAGGAGATGATCAGAATAGATGATTCCAACGAGGAGGA
GGAGGTGGAGGAGAAGGACGGAGTGAAGGATGAGAGAAAAAAGAGGGAGT
CTGTGAAAGGGTCCGATAATGTGATTGCAAAATGTGATAAAGGAGGAGGG
GGAAGGAGAGGAGAAGTTGGAGGAGGGAAGACAGTGAAACACGAAGGGGT
TGGCGAGGGAGAAGGAGGGGAGGGCGGGGAGGATAGTGACTTAGTTTTGG
ACATGCTGGATATGCTGGAAGAGCTTAAAGACGAAGATATCATTTCGAAG
AAGGAAGCGAAAGATCTTCGGTCGAGGGCGGTGAAGAAGGAAACGTTGAT
GGTGGAGGCGTTTTGGAAGGCACAGGCGTGTAGTTCTTTATTTACTGGGG
GGCAAATATTTCGAAAGATCGCGTTGGGCTTATAAGCACAGTATTCTTCA
AAAAGACCTACGAAGGGGTATCGAACAAAGTAATCAGGACCGTTCTTACG
TGGGGGTGCAGGAGCAAGTCACCAAAGCATCAAGGGTGCTAAACCAATAA
GGTCAAGAAAGAGGGAAGGGGGGGAGGAAGAACGAAATATGGAGGAGAGA
TGGTAGGGTGGAAACCTCTGAGCAAACGAAGGGAAGAAGAGGGAAGGAAT
TGATATGCATGTATGTAAAGTGATTAAAGAAGTTTATACGGGTGTACGTG
TACATGATAGTATTGATAGAGACAATCATTCAAAGTGAACAAACGAGCGA
GGGGTGGAGGGTTTGAAGCGCGTATGCCAGTAAAGGGCAAGATAGACTCG
CGTTGAAAGAGGGAGGCAGAATTTCACCTGGCATTGCAGCAATTTTATAT
AAATAATGACACAACAACATGAGTCATTATTGTACAGCCACGGAAATCAA
GGAAGAAAGAAACAAATATTGAACACGTTGAA
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protein sequence of jgi.p|Nanoce1779_2|575064

>mRNA_1027-protein ID=mRNA_1027-protein|Name=jgi.p|Nanoce1779_2|575064|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
MGGTAELKGGGASPSSAASSTLPAEVKEEGGGRKEEGVKKPRRRKISEDG
GSGGIEEEVVGKGDTNVEIQPSWGCKEMIRIDDSNEEEEVEEKDGVKDER
KKRESVKGSDNVIAKCDKGGGGRRGEVGGGKTVKHEGVGEGEGGEGGEDS
DLVLDMLDMLEELKDEDIISKKEAKDLRSRAVKKETLMVEAFWKAQACSS
LFTGGQIFRKIALGL*
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mRNA from alignment at scaffold_2:1044210..1045503+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1027 ID=mRNA_1027|Name=jgi.p|Nanoce1779_2|575064|organism=Nannochloropsis oceanica|type=mRNA|length=1294bp|location=Sequence derived from alignment at scaffold_2:1044210..1045503+ (Nannochloropsis oceanica)
CAAGAAGGACGAGCAATGAATATTATGATGAGGAACGGGCGAAGTTGCTA
AAAAGGGAAGAAGGAGAAGTAACAGCAGTAGAACAAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGGGAGGAAGATCTGGATGATTTGCTGGATA
TGGGAGGGACGGCCGAGTTGAAGGGTGGAGGTGCCTCTCCCTCATCTGCT
GCTTCGTCGACTTTGCCTGCTGAAGTGAAAGAAGAGGGAGGAGGGAGGAA
GGAAGAGGGTGTGAAGAAGCCGCGTCGTCGCAAGATCTCTGAGGATGGCG
GGTCTGGAGGGATTGAGGAAGAGGTGGTGGGAAAAGGCGACACAAATGTC
GAGATTCAACCGTCTTGGGGTTGCAAGGAGATGATCAGAATAGATGATTC
CAACGAGGAGGAGGAGGTGGAGGAGAAGGACGGAGTGAAGGATGAGAGAA
AAAAGAGGGAGTCTGTGAAAGGGTCCGATAATGTGATTGCAAAATGTGAT
AAAGGAGGAGGGGGAAGGAGAGGAGAAGTTGGAGGAGGGAAGACAGTGAA
ACACGAAGGGGTTGGCGAGGGAGAAGGAGGGGAGGGCGGGGAGGATAGTG
ACTTAGTTTTGGACATGCTGGATATGCTGGAAGAGCTTAAAGACGAAGAT
ATCATTTCGAAGAAGGAAGCGAAAGATCTTCGGTCGAGGGCGGTGAAGAA
GGAAACGTTGATGGTGGAGGCGTTTTGGAAGGCACAGGCGTGTAGTTCTT
TATTTACTGGGGGGCAAATATTTCGAAAGATCGCGTTGGGCTTATAAGCA
CAGTATTCTTCAAAAAGACCTACGAAGGGGTATCGAACAAAGTAATCAGG
ACCGTTCTTACGTGGGGGTGCAGGAGCAAGTCACCAAAGCATCAAGGGTG
CTAAACCAATAAGGTCAAGAAAGAGGGAAGGGGGGGAGGAAGAACGAAAT
ATGGAGGAGAGATGGTAGGGTGGAAACCTCTGAGCAAACGAAGGGAAGAA
GAGGGAAGGAATTGATATGCATGTATGTAAAGTGATTAAAGAAGTTTATA
CGGGTGTACGTGTACATGATAGTATTGATAGAGACAATCATTCAAAGTGA
ACAAACGAGCGAGGGGTGGAGGGTTTGAAGCGCGTATGCCAGTAAAGGGC
AAGATAGACTCGCGTTGAAAGAGGGAGGCAGAATTTCACCTGGCATTGCA
GCAATTTTATATAAATAATGACACAACAACATGAGTCATTATTGTACAGC
CACGGAAATCAAGGAAGAAAGAAACAAATATTGAACACGTTGAA
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Coding sequence (CDS) from alignment at scaffold_2:1044210..1045503+

>mRNA_1027 ID=mRNA_1027|Name=jgi.p|Nanoce1779_2|575064|organism=Nannochloropsis oceanica|type=CDS|length=648bp|location=Sequence derived from alignment at scaffold_2:1044210..1045503+ (Nannochloropsis oceanica)
ATGGGAGGGACGGCCGAGTTGAAGGGTGGAGGTGCCTCTCCCTCATCTGC
TGCTTCGTCGACTTTGCCTGCTGAAGTGAAAGAAGAGGGAGGAGGGAGGA
AGGAAGAGGGTGTGAAGAAGCCGCGTCGTCGCAAGATCTCTGAGGATGGC
GGGTCTGGAGGGATTGAGGAAGAGGTGGTGGGAAAAGGCGACACAAATGT
CGAGATTCAACCGTCTTGGGGTTGCAAGGAGATGATCAGAATAGATGATT
CCAACGAGGAGGAGGAGGTGGAGGAGAAGGACGGAGTGAAGGATGAGAGA
AAAAAGAGGGAGTCTGTGAAAGGGTCCGATAATGTGATTGCAAAATGTGA
TAAAGGAGGAGGGGGAAGGAGAGGAGAAGTTGGAGGAGGGAAGACAGTGA
AACACGAAGGGGTTGGCGAGGGAGAAGGAGGGGAGGGCGGGGAGGATAGT
GACTTAGTTTTGGACATGCTGGATATGCTGGAAGAGCTTAAAGACGAAGA
TATCATTTCGAAGAAGGAAGCGAAAGATCTTCGGTCGAGGGCGGTGAAGA
AGGAAACGTTGATGGTGGAGGCGTTTTGGAAGGCACAGGCGTGTAGTTCT
TTATTTACTGGGGGGCAAATATTTCGAAAGATCGCGTTGGGCTTATAA
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Synonyms
Publications