jgi.p|Nanoce1779_2|674571, mRNA_10265 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|674571
Unique Name	mRNA_10265
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	789
Alignment location	scaffold_47:66180..67363 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	674657
Track	FilteredModels2
ProteinId	674571

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_47	supercontig	scaffold_47:66180..67363 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674571	gene_10265	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674571	mRNA_10265-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10265	CDS_10265	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_47:66180..67363+
coding sequence from alignment at scaffold_47:66180..67363+

mRNA sequence

>mRNA_10265 ID=mRNA_10265|Name=jgi.p|Nanoce1779_2|674571|organism=Nannochloropsis oceanica|type=mRNA|length=789bp
ATGAATGCCAAAGCAGCTTCATTGTTGATTGATGGTGGTGGGGAGCTGAA
CATGCGGAAGCTCCAGCAGGAATTACACCAAGCCCTGGACGAAGACCAGC
GACTCACACGCGTGGACGTCGTAAAAAAACGCGCCGTGCGCACGGTTGGA
AGCTATGAGGAATTCAAGAATTTGGTGGCTTGTGCCCACCTTAGACCGCT
TACCCGCAAGGACATTCAGAATGTTGCCCAGCGCACGCAAGTATGGACTA
CGACGAGCAGTAGAGCGGCTGGGATGATCAACCGTGAATGGCAGCAGCTG
GCCAAAGCCGGCAAGACAAACCACGAAAAATTATCACTTCTTTCTGCTGG
TGGAGCGTCATCTCTGAACCGGTGCTATGTCATGGGGAAGGAGAAAAGAG
AGATGAATGCTGATGTGTTTGGTGATGTGGTCGTAGTGCTGTGGGAGGCA
TTGCAAGAAGAGGAAGGCAGTGGGGGTGGAAGTCGGAAAATGGAGGAATA
CGATGGTCATGAAGGAAGGGAAGAGAAAACAGGTGTTGATTTAATCACGG
ATGTCTTGGAGGTATTGCACGTTCTGACTAAGATTGATAGGATCCAGATC
ACCCTTGCGCTGCTGAGCAAGTCTCAGCGGGAGGCGATGAGTGCATTACT
GGGAAGACTGGAGAGAGAGAAAAGGGAGGGAAAGGATGAGAGAAGGCAGC
GCATGGAGGAGGTGCAGCGTGCGTTTTCATTTTTGGCCCGTGGTGGAGGG
AGAAAGCTAGAGGAGGCACGTGATACCGTTACGTTATAA

protein sequence of jgi.p|Nanoce1779_2|674571

>mRNA_10265-protein ID=mRNA_10265-protein|Name=jgi.p|Nanoce1779_2|674571|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MNAKAASLLIDGGGELNMRKLQQELHQALDEDQRLTRVDVVKKRAVRTVG
SYEEFKNLVACAHLRPLTRKDIQNVAQRTQVWTTTSSRAAGMINREWQQL
AKAGKTNHEKLSLLSAGGASSLNRCYVMGKEKREMNADVFGDVVVVLWEA
LQEEEGSGGGSRKMEEYDGHEGREEKTGVDLITDVLEVLHVLTKIDRIQI
TLALLSKSQREAMSALLGRLEREKREGKDERRQRMEEVQRAFSFLARGGG
RKLEEARDTVTL*

mRNA from alignment at scaffold_47:66180..67363+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10265 ID=mRNA_10265|Name=jgi.p|Nanoce1779_2|674571|organism=Nannochloropsis oceanica|type=mRNA|length=1184bp|location=Sequence derived from alignment at scaffold_47:66180..67363+ (Nannochloropsis oceanica)
ATGAATGCCAAAGCAGCTTCATTGTTGATTGATGGTGGTGGGGAGCTGAA
CATGCGGAAGCTCCAGCAGGAATTAGTACGTGCTTTTAATCATGCCTTTT
CCCAACCCTACGCCCCCAGGCCCATTTTCACTTTTCACCCCTTTGTCCAT
ACGTTCAGTCATTTGAGCCACGCATTGAACAATACACAGGTAGCTTGGCT
TGGCAGTAGTGTATTTAGGTTCCAGATCCCCTCCCAAAGTAATGTCGCTT
TGTTTTTCAGGCTCATTTTCCCCGAATCCTCCTTTCCTCCCCTTCCCCTC
ACAAGCACCAAGCCCTGGACGAAGACCAGCGACTCACACGCGTGGACGTC
GTAAAAAAACGCGCCGTGCGCACGGTTGGAAGCTATGAGGAATTCAAGAA
TTTGGTGGCTTGTGCCCACCTTAGACCGCTTACCCGCAAGGACATTCAGA
ATGTTGCCCAGCGCACGCAAGTATGGACTACGACGAGCAGTAGAGCGGCT
GGGATGATCAACGTAAAAAGAAATGAAAGGAACGGAAGGAACAGTAATGC
TCTATATGAGCTGCAAGATGAATATGACAGAAAGAATGCGGCGACGACAA
TGCATGGAAATCAAAACTCCTCCTCTTCAATCCCCTCATCCTCATCCGCT
ACCGCTACTACCCCCCTGACCTTTGAGCGTGAATGGCAGCAGCTGGCCAA
AGCCGGCAAGACAAACCACGAAAAATTATCACTTCTTTCTGCTGGTGGAG
CGTCATCTCTGAACCGGTGCTATGTCATGGGGAAGGAGAAAAGAGAGATG
AATGCTGATGTGTTTGGTGATGTGGTCGTAGTGCTGTGGGAGGCATTGCA
AGAAGAGGAAGGCAGTGGGGGTGGAAGTCGGAAAATGGAGGAATACGATG
GTCATGAAGGAAGGGAAGAGAAAACAGGTGTTGATTTAATCACGGATGTC
TTGGAGGTATTGCACGTTCTGACTAAGATTGATAGGATCCAGATCACCCT
TGCGCTGCTGAGCAAGTCTCAGCGGGAGGCGATGAGTGCATTACTGGGAA
GACTGGAGAGAGAGAAAAGGGAGGGAAAGGATGAGAGAAGGCAGCGCATG
GAGGAGGTGCAGCGTGCGTTTTCATTTTTGGCCCGTGGTGGAGGGAGAAA
GCTAGAGGAGGCACGTGATACCGTTACGTTATAA

Coding sequence (CDS) from alignment at scaffold_47:66180..67363+

>mRNA_10265 ID=mRNA_10265|Name=jgi.p|Nanoce1779_2|674571|organism=Nannochloropsis oceanica|type=CDS|length=2367bp|location=Sequence derived from alignment at scaffold_47:66180..67363+ (Nannochloropsis oceanica)
ATGAATGCCAAAGCAGCTTCATTGTTGATTGATGGTGGTGGGGAGCTGAA
CATGCGGAAGCTCCAGCAGGAATTACACCAAGCCCTGGACGAAGACCAGC
GACTCACACGCGTGGACGTCGTAAAAAAACGCGCCGTGCGCACGGTTGGA
AGCTATGAGGAATTCAAGAATTTGGTGGCTTGTGCCCACCTTAGACCGCT
TACCCGCAAGGACATTCAGAATGTTGCCCAGCGCACGCAAGTATGGACTA
CGACGAGCAGTAGAGCGGCTGGGATGATCAACCGTGAATGGCAGCAGCTG
GCCAAAGCCGGCAAGACAAACCACGAAAAATTATCACTTCTTTCTGCTGG
TGGAGCGTCATCTCTGAACCGGTGCTATGTCATGGGGAAGGAGAAAAGAG
AGATGAATGCTGATGTGTTTGGTGATGTGGTCGTAGTGCTGTGGGAGGCA
TTGCAAGAAGAGGAAGGCAGTGGGGGTGGAAGTCGGAAAATGGAGGAATA
CGATGGTCATGAAGGAAGGGAAGAGAAAACAGGTGTTGATTTAATCACGG
ATGTCTTGGAGGTATTGCACGTTCTGACTAAGATTGATAGGATCCAGATC
ACCCTTGCGCTGCTGAGCAAGTCTCAGCGGGAGGCGATGAGTGCATTACT
GGGAAGACTGGAGAGAGAGAAAAGGGAGGGAAAGGATGAGAGAAGGCAGC
GCATGGAGGAGGTGCAGCGTGCGTTTTCATTTTTGGCCCGTGGTGGAGGG
AGAAAGCTAGAGGAGGCACGTGATACCGTTACGTTATAAATGAATGCCAA
AGCAGCTTCATTGTTGATTGATGGTGGTGGGGAGCTGAACATGCGGAAGC
TCCAGCAGGAATTACACCAAGCCCTGGACGAAGACCAGCGACTCACACGC
GTGGACGTCGTAAAAAAACGCGCCGTGCGCACGGTTGGAAGCTATGAGGA
ATTCAAGAATTTGGTGGCTTGTGCCCACCTTAGACCGCTTACCCGCAAGG
ACATTCAGAATGTTGCCCAGCGCACGCAAGTATGGACTACGACGAGCAGT
AGAGCGGCTGGGATGATCAACCGTGAATGGCAGCAGCTGGCCAAAGCCGG
CAAGACAAACCACGAAAAATTATCACTTCTTTCTGCTGGTGGAGCGTCAT
CTCTGAACCGGTGCTATGTCATGGGGAAGGAGAAAAGAGAGATGAATGCT
GATGTGTTTGGTGATGTGGTCGTAGTGCTGTGGGAGGCATTGCAAGAAGA
GGAAGGCAGTGGGGGTGGAAGTCGGAAAATGGAGGAATACGATGGTCATG
AAGGAAGGGAAGAGAAAACAGGTGTTGATTTAATCACGGATGTCTTGGAG
GTATTGCACGTTCTGACTAAGATTGATAGGATCCAGATCACCCTTGCGCT
GCTGAGCAAGTCTCAGCGGGAGGCGATGAGTGCATTACTGGGAAGACTGG
AGAGAGAGAAAAGGGAGGGAAAGGATGAGAGAAGGCAGCGCATGGAGGAG
GTGCAGCGTGCGTTTTCATTTTTGGCCCGTGGTGGAGGGAGAAAGCTAGA
GGAGGCACGTGATACCGTTACGTTATAAATGAATGCCAAAGCAGCTTCAT
TGTTGATTGATGGTGGTGGGGAGCTGAACATGCGGAAGCTCCAGCAGGAA
TTACACCAAGCCCTGGACGAAGACCAGCGACTCACACGCGTGGACGTCGT
AAAAAAACGCGCCGTGCGCACGGTTGGAAGCTATGAGGAATTCAAGAATT
TGGTGGCTTGTGCCCACCTTAGACCGCTTACCCGCAAGGACATTCAGAAT
GTTGCCCAGCGCACGCAAGTATGGACTACGACGAGCAGTAGAGCGGCTGG
GATGATCAACCGTGAATGGCAGCAGCTGGCCAAAGCCGGCAAGACAAACC
ACGAAAAATTATCACTTCTTTCTGCTGGTGGAGCGTCATCTCTGAACCGG
TGCTATGTCATGGGGAAGGAGAAAAGAGAGATGAATGCTGATGTGTTTGG
TGATGTGGTCGTAGTGCTGTGGGAGGCATTGCAAGAAGAGGAAGGCAGTG
GGGGTGGAAGTCGGAAAATGGAGGAATACGATGGTCATGAAGGAAGGGAA
GAGAAAACAGGTGTTGATTTAATCACGGATGTCTTGGAGGTATTGCACGT
TCTGACTAAGATTGATAGGATCCAGATCACCCTTGCGCTGCTGAGCAAGT
CTCAGCGGGAGGCGATGAGTGCATTACTGGGAAGACTGGAGAGAGAGAAA
AGGGAGGGAAAGGATGAGAGAAGGCAGCGCATGGAGGAGGTGCAGCGTGC
GTTTTCATTTTTGGCCCGTGGTGGAGGGAGAAAGCTAGAGGAGGCACGTG
ATACCGTTACGTTATAA

Synonyms

Publications