jgi.p|Nanoce1779_2|319384, mRNA_10264 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|319384
Unique NamemRNA_10264
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length984
Alignment locationscaffold_47:64599..65962 -

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Properties
Property NameValue
TranscriptId319470
TrackFilteredModels2
ProteinId319384
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:64599..65962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|319384gene_10264Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|319384mRNA_10264-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10264CDS_10264Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10264 ID=mRNA_10264|Name=jgi.p|Nanoce1779_2|319384|organism=Nannochloropsis oceanica|type=mRNA|length=984bp
CCGAAACCCTCGCCCGTCTTGGACACGGCATTATCTTTTTCACTCAATCA
TAATTATCCGGCCTCGTCTCACTTCATTCACCATACGGCATTATTTTTCA
ACCCTCCGGGCAGCCCCTAGGATGAACGACAGCCCACCCCCTGGTGGAGG
TAGAGGAGACGGTCGAGGTGCTGGACGGGGTCGTGGCGGCGGCCCTGTGG
GTGAGCCACTGTTTGCTCCCGACAATGACGACTCCACCAGCCTCCCCTCC
GGCCCTCCTCCCTCAAGCAATGGCGGTCGAGGCCGAGGCCGTGGCAATGG
CCTACCGTCCTCTTCTCACGACAACGACGACGCCGAAAGTGGCCGCAGTG
GAGGCGGCCGAGGTGGAGGGCGTGGAGACAAGGACATTGACTTTGCACGT
GGCCCGCCAGGATTGTTTTCGACGGCCGATTGGACCTGCCCTTCGTGTGG
TAATACCAACTGGGCCCGTCGTGAGATATGCAACATGTGCGGTGGGAAGA
AGCCGACCCTGGCAGGCGCGGGCGAGGCGAGGGAGGGGTTAGGGGGAGGG
TTTAATGAACGACAGGAGAGGGGAGCAGCGACCTTGGGAGTGGAAATTGG
GGATGATGGTTTTGATGATTTTGGAAGGAAGAAACAGAAGGAGAAGGTGG
ATAGGAAGGCAAAGGAGGTGGCAGCATTGGCACGGTTGAAGGCGACGTTT
GGAACGGAATCCCTTAGCATCGTGTCGTCCTGCTGGTGGTGGTAACAATG
GTGATGGTTTCTATCGGCGGAAAGAGGTATATAAGGGGGGCAGGCGGCGA
GATAGTCGCAGTCGAAGCCGGGAGAGAGAGCGGGGAGGAGAACGGGAGGG
AGGAAGTGGGGGAAAAGGAGAGAGGGGAAGGTCTCGAGATCGATCGCGTG
AAAGAGATTATCGAGGAGAGAGGGGAAGGTCTCGAGATCGATCACGTGAA
AGAGATGATCGAGGGGGAGGGAAGTATGGTGGGG
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protein sequence of jgi.p|Nanoce1779_2|319384

>mRNA_10264-protein ID=mRNA_10264-protein|Name=jgi.p|Nanoce1779_2|319384|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MNDSPPPGGGRGDGRGAGRGRGGGPVGEPLFAPDNDDSTSLPSGPPPSSN
GGRGRGRGNGLPSSSHDNDDAESGRSGGGRGGGRGDKDIDFARGPPGLFS
TADWTCPSCGNTNWARREICNMCGGKKPTLAGAGEAREGLGGGFNERQER
GAATLGVEIGDDGFDDFGRKKQKEKVDRKAKEVAALARLKATFGTESLSI
VSSCWWW*
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mRNA from alignment at scaffold_47:64599..65962-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10264 ID=mRNA_10264|Name=jgi.p|Nanoce1779_2|319384|organism=Nannochloropsis oceanica|type=mRNA|length=1364bp|location=Sequence derived from alignment at scaffold_47:64599..65962- (Nannochloropsis oceanica)
CCGAAACCCTCGCCCGTCTTGGACACGGCATTATCTTTTTCACTCAATCA
TAATTATCCGGCCTCGTCTCACTTCATTCACCATACGGCATTATTTTTCA
ACCCTCCGGGCAGCCCCTAGGATGAACGACAGCCCACCCCCTGGTGGAGG
TAGAGGAGACGGTCGAGGTGCTGGACGGGGTCGTGGCGGCGGCCCTGTGG
GTGAGCCACTGTTTGCTCCCGACAATGACGACTCCACCAGCCTCCCCTCC
GGCCCTCCTCCCTCAAGCAATGGCGGTCGAGGCCGAGGCCGTGGCAATGG
CCTACCGTCCTCTTCTCACGACAACGACGACGCCGAAAGTGGCCGCAGTG
GCGGCGGAGGAAGAGGGCGGGGTCGAGGAGGAGGAGGAGGAGGAGGCGGC
CGAGGTGGAGGGCGTGGAGACAAGGACATTGACTTTGCACGTGGCCCGCC
AGGATTGTTTTCGACGGCCGATTGGACCTGCCCTTCGTGTGGTAATACCA
ACTGGGCCCGTCGTGAGATATGCAACATGTGCGGTGGGAAGAAGCCGACC
CTGGCAGGCGCGGGCGAGGCGAGGGAGGGGTTAGGGGGAGGGTTTAATGA
ACGACAGGAGAGGGGAGCAGCGACCTTGGGAGTGGAAATTGGGGATGATG
GTTTTGATGATTTTGGAAGGAAGAAACAGAAGGAGAAGGTGGATAGGAAG
GCAAAGGAGGTGGCAGCATTGGCACGGTTGAAGGCGACGTTTGGGTGCGT
AGAGGGAGGGAAGGAGGAAGGGAGGGAGGGAGGGAAGGAGGGAGGGTGGA
CTGCCCGAGTGGGTTACGGATGGAAGTGAGAGAGGAAGAGAATGAGAGAG
AGAGGTGTTAGAGCCTATGACAAACTCGTTTTCCTAATAATAGTAACGTT
TGTTGCTTCTTTCTACCGCCTTTCACCTCACAGAACGGAATCCCTTAGCA
TCGTGCAGCCCAAACTGGCGACCTCCTCCTCCTCCGCGACCTCCGCTTTG
TTTCCTGCCTCCTCCTCCTCCTCCTCGACGGGCCGGAGTGACAGCAGAGG
CAGAGATGGAAGAAGGGAAAGAGGGCGATTTGATGACGCAGAGGAGGAGA
GAGGTCGTCCTGCTGGTGGTGGTAACAATGGTGATGGTTTCTATCGGCGG
AAAGAGGTATATAAGGGGGGCAGGCGGCGAGATAGTCGCAGTCGAAGCCG
GGAGAGAGAGCGGGGAGGAGAACGGGAGGGAGGAAGTGGGGGAAAAGGAG
AGAGGGGAAGGTCTCGAGATCGATCGCGTGAAAGAGATTATCGAGGAGAG
AGGGGAAGGTCTCGAGATCGATCACGTGAAAGAGATGATCGAGGGGGAGG
GAAGTATGGTGGGG
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Coding sequence (CDS) from alignment at scaffold_47:64599..65962-

>mRNA_10264 ID=mRNA_10264|Name=jgi.p|Nanoce1779_2|319384|organism=Nannochloropsis oceanica|type=CDS|length=2496bp|location=Sequence derived from alignment at scaffold_47:64599..65962- (Nannochloropsis oceanica)
GTCGTCCTGCTGGTGGTGGTAAAACGGAATCCCTTAGCATCGTGAGGCGG
CCGAGGTGGAGGGCGTGGAGACAAGGACATTGACTTTGCACGTGGCCCGC
CAGGATTGTTTTCGACGGCCGATTGGACCTGCCCTTCGTGTGGTAATACC
AACTGGGCCCGTCGTGAGATATGCAACATGTGCGGTGGGAAGAAGCCGAC
CCTGGCAGGCGCGGGCGAGGCGAGGGAGGGGTTAGGGGGAGGGTTTAATG
AACGACAGGAGAGGGGAGCAGCGACCTTGGGAGTGGAAATTGGGGATGAT
GGTTTTGATGATTTTGGAAGGAAGAAACAGAAGGAGAAGGTGGATAGGAA
GGCAAAGGAGGTGGCAGCATTGGCACGGTTGAAGGCGACGTTTGGATGAA
CGACAGCCCACCCCCTGGTGGAGGTAGAGGAGACGGTCGAGGTGCTGGAC
GGGGTCGTGGCGGCGGCCCTGTGGGTGAGCCACTGTTTGCTCCCGACAAT
GACGACTCCACCAGCCTCCCCTCCGGCCCTCCTCCCTCAAGCAATGGCGG
TCGAGGCCGAGGCCGTGGCAATGGCCTACCGTCCTCTTCTCACGACAACG
ACGACGCCGAAAGTGGCCGCAGTGGTCGTCCTGCTGGTGGTGGTAAAACG
GAATCCCTTAGCATCGTGAGGCGGCCGAGGTGGAGGGCGTGGAGACAAGG
ACATTGACTTTGCACGTGGCCCGCCAGGATTGTTTTCGACGGCCGATTGG
ACCTGCCCTTCGTGTGGTAATACCAACTGGGCCCGTCGTGAGATATGCAA
CATGTGCGGTGGGAAGAAGCCGACCCTGGCAGGCGCGGGCGAGGCGAGGG
AGGGGTTAGGGGGAGGGTTTAATGAACGACAGGAGAGGGGAGCAGCGACC
TTGGGAGTGGAAATTGGGGATGATGGTTTTGATGATTTTGGAAGGAAGAA
ACAGAAGGAGAAGGTGGATAGGAAGGCAAAGGAGGTGGCAGCATTGGCAC
GGTTGAAGGCGACGTTTGGATGAACGACAGCCCACCCCCTGGTGGAGGTA
GAGGAGACGGTCGAGGTGCTGGACGGGGTCGTGGCGGCGGCCCTGTGGGT
GAGCCACTGTTTGCTCCCGACAATGACGACTCCACCAGCCTCCCCTCCGG
CCCTCCTCCCTCAAGCAATGGCGGTCGAGGCCGAGGCCGTGGCAATGGCC
TACCGTCCTCTTCTCACGACAACGACGACGCCGAAAGTGGCCGCAGTGGT
CGTCCTGCTGGTGGTGGTAAAACGGAATCCCTTAGCATCGTGAGGCGGCC
GAGGTGGAGGGCGTGGAGACAAGGACATTGACTTTGCACGTGGCCCGCCA
GGATTGTTTTCGACGGCCGATTGGACCTGCCCTTCGTGTGGTAATACCAA
CTGGGCCCGTCGTGAGATATGCAACATGTGCGGTGGGAAGAAGCCGACCC
TGGCAGGCGCGGGCGAGGCGAGGGAGGGGTTAGGGGGAGGGTTTAATGAA
CGACAGGAGAGGGGAGCAGCGACCTTGGGAGTGGAAATTGGGGATGATGG
TTTTGATGATTTTGGAAGGAAGAAACAGAAGGAGAAGGTGGATAGGAAGG
CAAAGGAGGTGGCAGCATTGGCACGGTTGAAGGCGACGTTTGGATGAACG
ACAGCCCACCCCCTGGTGGAGGTAGAGGAGACGGTCGAGGTGCTGGACGG
GGTCGTGGCGGCGGCCCTGTGGGTGAGCCACTGTTTGCTCCCGACAATGA
CGACTCCACCAGCCTCCCCTCCGGCCCTCCTCCCTCAAGCAATGGCGGTC
GAGGCCGAGGCCGTGGCAATGGCCTACCGTCCTCTTCTCACGACAACGAC
GACGCCGAAAGTGGCCGCAGTGGTCGTCCTGCTGGTGGTGGTAAAACGGA
ATCCCTTAGCATCGTGAGGCGGCCGAGGTGGAGGGCGTGGAGACAAGGAC
ATTGACTTTGCACGTGGCCCGCCAGGATTGTTTTCGACGGCCGATTGGAC
CTGCCCTTCGTGTGGTAATACCAACTGGGCCCGTCGTGAGATATGCAACA
TGTGCGGTGGGAAGAAGCCGACCCTGGCAGGCGCGGGCGAGGCGAGGGAG
GGGTTAGGGGGAGGGTTTAATGAACGACAGGAGAGGGGAGCAGCGACCTT
GGGAGTGGAAATTGGGGATGATGGTTTTGATGATTTTGGAAGGAAGAAAC
AGAAGGAGAAGGTGGATAGGAAGGCAAAGGAGGTGGCAGCATTGGCACGG
TTGAAGGCGACGTTTGGATGAACGACAGCCCACCCCCTGGTGGAGGTAGA
GGAGACGGTCGAGGTGCTGGACGGGGTCGTGGCGGCGGCCCTGTGGGTGA
GCCACTGTTTGCTCCCGACAATGACGACTCCACCAGCCTCCCCTCCGGCC
CTCCTCCCTCAAGCAATGGCGGTCGAGGCCGAGGCCGTGGCAATGGCCTA
CCGTCCTCTTCTCACGACAACGACGACGCCGAAAGTGGCCGCAGTG
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Synonyms
Publications