jgi.p|Nanoce1779_2|609832, mRNA_10263 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|609832
Unique Name	mRNA_10263
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1186
Alignment location	scaffold_47:63435..64620 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	609918
Track	FilteredModels2
ProteinId	609832

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_47	supercontig	scaffold_47:63435..64620 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609832	gene_10263	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609832	mRNA_10263-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10263	CDS_10263	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_47:63435..64620+
coding sequence from alignment at scaffold_47:63435..64620+

mRNA sequence

>mRNA_10263 ID=mRNA_10263|Name=jgi.p|Nanoce1779_2|609832|organism=Nannochloropsis oceanica|type=mRNA|length=1186bp
GGGTATCATGTGCGTCTCTTGGGGTGGGGAGATTGCCCATTTAGACTTGA
CGCAATTTAATTCTGTATCTCTTTGATACATGCCCATTCGAGAAAGGCCC
AAACATCATGTCTTCCTATTTTAATGGCGAATAGCTTTTATGTAATCGGA
TTTGTCGCGAGGATGTCCTCAAAAGGCGGTACACGGTATTAGGAAAGAAG
AAAGTGGCAACGGAAAACTTGCCGTTTGTAGATGAAGCTGGCTTGATTAC
ATTGTATCACGACGTGTGATACACTTTCCTCATCCGGCACCGCCAGTAGA
ACCAGACAAGGGAAACCAAGCTTAAGTGCGCGCCTATACTTGTTGAGGGG
CCGATGCGACCAAGATACCATTGACAACCTATCAGTTATTGCCGTCCCCC
CTTCCCTCCTCCATTTCTCCAACACAACACCCTGGGGCCAGAGATGCCAC
GAGCACGCTCGTTGCTTTCCCATTTTCTGCTGGGCTTCCTTCCCTTCCTC
GTCGTGCCTATTGCTGGCGCCGCTGCCTTCCTCCCATCTTCCCCCACCAG
CCCCCTTCTTTCCCTGCCACCTACAAGCACCGCTACCACACTCTCCTCCT
CTTCCTCCTCTTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TTTTTACCATCTTTATCTCCCACCTCCTCCATCTCTCCCTCTGAAACTTC
CCGCACCTGCCGTATCTGCCTTCAGCCCTTCCTCCCCTCCCTTAACCATC
CCTCTGCCTGCAGGTACCATCCCAGTGCATACTTGGGAAATGAGAAAAGT
AAATTTTGTGGAACGAGGAGTGGAGGGAAGGATCGAGGACTGGCCAGATT
CTGGGATTGCTGCGGAGAGACAAGTGCGACGGCGCCAGGGTGTGTGGCGT
GTCGGCATCGTTCGTATGATGATTAGGGGAGGGAGAATGAGGGGTTCGGG
AGAGAAGACGAAAAGAGCTGAGAAATAGGAAGAATGGACGCACAGCAGCC
ATAAACTAACCTCATCCAATGTTAGAACTGTCGGAACTGTTGGGTTTTAC
TTCACTTCAAAGCTCAATCAACGCCCTCATCATTGATTCCTCTTTAACTC
CGGCTATACCTTTCCCTGCTCCTGCTCCTGCTCCCGCTCCTGCTCCGCCT
CCTCCCTCCTCCTCCCCCACCATACTTCCCTCCCCC

protein sequence of jgi.p|Nanoce1779_2|609832

>mRNA_10263-protein ID=mRNA_10263-protein|Name=jgi.p|Nanoce1779_2|609832|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MPRARSLLSHFLLGFLPFLVVPIAGAAAFLPSSPTSPLLSLPPTSTATTL
SSSSSSSSSSSSSSSSSSSFLPSLSPTSSISPSETSRTCRICLQPFLPSL
NHPSACRYHPSAYLGNEKSKFCGTRSGGKDRGLARFWDCCGETSATAPGC
VACRHRSYDD*

mRNA from alignment at scaffold_47:63435..64620+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10263 ID=mRNA_10263|Name=jgi.p|Nanoce1779_2|609832|organism=Nannochloropsis oceanica|type=mRNA|length=1186bp|location=Sequence derived from alignment at scaffold_47:63435..64620+ (Nannochloropsis oceanica)
GGGTATCATGTGCGTCTCTTGGGGTGGGGAGATTGCCCATTTAGACTTGA
CGCAATTTAATTCTGTATCTCTTTGATACATGCCCATTCGAGAAAGGCCC
AAACATCATGTCTTCCTATTTTAATGGCGAATAGCTTTTATGTAATCGGA
TTTGTCGCGAGGATGTCCTCAAAAGGCGGTACACGGTATTAGGAAAGAAG
AAAGTGGCAACGGAAAACTTGCCGTTTGTAGATGAAGCTGGCTTGATTAC
ATTGTATCACGACGTGTGATACACTTTCCTCATCCGGCACCGCCAGTAGA
ACCAGACAAGGGAAACCAAGCTTAAGTGCGCGCCTATACTTGTTGAGGGG
CCGATGCGACCAAGATACCATTGACAACCTATCAGTTATTGCCGTCCCCC
CTTCCCTCCTCCATTTCTCCAACACAACACCCTGGGGCCAGAGATGCCAC
GAGCACGCTCGTTGCTTTCCCATTTTCTGCTGGGCTTCCTTCCCTTCCTC
GTCGTGCCTATTGCTGGCGCCGCTGCCTTCCTCCCATCTTCCCCCACCAG
CCCCCTTCTTTCCCTGCCACCTACAAGCACCGCTACCACACTCTCCTCCT
CTTCCTCCTCTTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TTTTTACCATCTTTATCTCCCACCTCCTCCATCTCTCCCTCTGAAACTTC
CCGCACCTGCCGTATCTGCCTTCAGCCCTTCCTCCCCTCCCTTAACCATC
CCTCTGCCTGCAGGTACCATCCCAGTGCATACTTGGGAAATGAGAAAAGT
AAATTTTGTGGAACGAGGAGTGGAGGGAAGGATCGAGGACTGGCCAGATT
CTGGGATTGCTGCGGAGAGACAAGTGCGACGGCGCCAGGGTGTGTGGCGT
GTCGGCATCGTTCGTATGATGATTAGGGGAGGGAGAATGAGGGGTTCGGG
AGAGAAGACGAAAAGAGCTGAGAAATAGGAAGAATGGACGCACAGCAGCC
ATAAACTAACCTCATCCAATGTTAGAACTGTCGGAACTGTTGGGTTTTAC
TTCACTTCAAAGCTCAATCAACGCCCTCATCATTGATTCCTCTTTAACTC
CGGCTATACCTTTCCCTGCTCCTGCTCCTGCTCCCGCTCCTGCTCCGCCT
CCTCCCTCCTCCTCCCCCACCATACTTCCCTCCCCC

Coding sequence (CDS) from alignment at scaffold_47:63435..64620+

>mRNA_10263 ID=mRNA_10263|Name=jgi.p|Nanoce1779_2|609832|organism=Nannochloropsis oceanica|type=CDS|length=483bp|location=Sequence derived from alignment at scaffold_47:63435..64620+ (Nannochloropsis oceanica)
ATGCCACGAGCACGCTCGTTGCTTTCCCATTTTCTGCTGGGCTTCCTTCC
CTTCCTCGTCGTGCCTATTGCTGGCGCCGCTGCCTTCCTCCCATCTTCCC
CCACCAGCCCCCTTCTTTCCCTGCCACCTACAAGCACCGCTACCACACTC
TCCTCCTCTTCCTCCTCTTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTTTTTACCATCTTTATCTCCCACCTCCTCCATCTCTCCCTCTG
AAACTTCCCGCACCTGCCGTATCTGCCTTCAGCCCTTCCTCCCCTCCCTT
AACCATCCCTCTGCCTGCAGGTACCATCCCAGTGCATACTTGGGAAATGA
GAAAAGTAAATTTTGTGGAACGAGGAGTGGAGGGAAGGATCGAGGACTGG
CCAGATTCTGGGATTGCTGCGGAGAGACAAGTGCGACGGCGCCAGGGTGT
GTGGCGTGTCGGCATCGTTCGTATGATGATTAG

Synonyms

Publications