jgi.p|Nanoce1779_2|319206, mRNA_10260 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|319206
Unique Name	mRNA_10260
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	950
Alignment location	scaffold_47:53969..54918 +

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Properties


Property Name	Value
TranscriptId	319292
Track	FilteredModels2
ProteinId	319206

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_47	supercontig	scaffold_47:53969..54918 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|319206	gene_10260	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|319206	mRNA_10260-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10260	CDS_10260	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_47:53969..54918+
coding sequence from alignment at scaffold_47:53969..54918+

mRNA sequence

>mRNA_10260 ID=mRNA_10260|Name=jgi.p|Nanoce1779_2|319206|organism=Nannochloropsis oceanica|type=mRNA|length=950bp
GCTGTGGTGGCGGTTGCTGCCACAGGGAGCTGTTATTGCTGCTGTACTGC
ATGACGCGATGTGTCGTCTTTACTTTCATATCTCCCCAGCATCTGCCTCT
CTTCTTCGTGTCGCGGTCTTTGATCATTCGCTCTCAAAGCCTTCCTATAT
AAAATTGATTACCCCTGTGTTCCCTCTTATTTTATTGCTTGCAATTTGAT
GAGTAAAAGACGCTGCTGTATTTCGTCTGCTTGCTGCTGCTTCTCCTCAC
TTGCTACTGCTGCTGCTGCGACTCGCGTACCCGTGATGAACGTCTTTAGC
CCCCGTCGAAGATTTCCCATAAAACAAAAACAAAAATATTCACTTTTTAA
TGTCCCTTGATGCTGCTACCGCTACCGCTGCTGCTGCTGCTGCTGTTGCT
GCTGCGAATGCGGCTGTATATGCTGCCACTTCATCGTTATCTCTCCTCCT
CCTCCTTCAGCTCCCTTCTTTCCCCTTCTTTCCCGCCTCTTCGTCTTCGT
TTCTGTCTCCTCTTTCATCGTTTCCCCCCTCCCCCCCCCTCTACATCGAT
GTCAACGCTGCTATATCCTTCGCATTTTCTGTTCACCCTGCTACTGCCAT
TACAGCTCCTGCATATCGCACGCCCCTCTTTGCTTCATTCCCTCCCTCCC
TCTTTCCCTCCCTCCCTCCTCCCATCCGCCCCATACGTTCGACTGCCTCA
ACGCACACCCTCCCTCCCTCTCTTCCTCCCTCCCTCCCTCCCTCCCTCTT
TAGCGGCTACTGTCCATCTCCCCGCTCTTCCTCCTGGAGAAGAAGGCTTT
CTTGGAACGAGGGGTAGCGTCCGCGGAGAAGGAGCTCATGTGCTTGGCCA
TGGAATTGCCTCCCTTGCCCGTTAAATTAACGGCGCCTTTTAGACCGTTT
CCCTGTGAGGGAATGGAGGAAGAAAGGAAGGTAGGGAGGGTGTAAATTTC

protein sequence of jgi.p|Nanoce1779_2|319206

>mRNA_10260-protein ID=mRNA_10260-protein|Name=jgi.p|Nanoce1779_2|319206|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MLLPLPLLLLLLLLLRMRLYMLPLHRYLSSSSFSSLLSPSFPPLRLRFCL
LFHRFPPPPPSTSMSTLLYPSHFLFTLLLPLQLLHIARPSLLHSLPPSFP
PSLLPSAPYVRLPQRTPSLPLFLPPSLPPSLAATVHLPALPPGEEGFLGT
RGSVRGEGAHVLGHGIASLAR*

mRNA from alignment at scaffold_47:53969..54918+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10260 ID=mRNA_10260|Name=jgi.p|Nanoce1779_2|319206|organism=Nannochloropsis oceanica|type=mRNA|length=950bp|location=Sequence derived from alignment at scaffold_47:53969..54918+ (Nannochloropsis oceanica)
GCTGTGGTGGCGGTTGCTGCCACAGGGAGCTGTTATTGCTGCTGTACTGC
ATGACGCGATGTGTCGTCTTTACTTTCATATCTCCCCAGCATCTGCCTCT
CTTCTTCGTGTCGCGGTCTTTGATCATTCGCTCTCAAAGCCTTCCTATAT
AAAATTGATTACCCCTGTGTTCCCTCTTATTTTATTGCTTGCAATTTGAT
GAGTAAAAGACGCTGCTGTATTTCGTCTGCTTGCTGCTGCTTCTCCTCAC
TTGCTACTGCTGCTGCTGCGACTCGCGTACCCGTGATGAACGTCTTTAGC
CCCCGTCGAAGATTTCCCATAAAACAAAAACAAAAATATTCACTTTTTAA
TGTCCCTTGATGCTGCTACCGCTACCGCTGCTGCTGCTGCTGCTGTTGCT
GCTGCGAATGCGGCTGTATATGCTGCCACTTCATCGTTATCTCTCCTCCT
CCTCCTTCAGCTCCCTTCTTTCCCCTTCTTTCCCGCCTCTTCGTCTTCGT
TTCTGTCTCCTCTTTCATCGTTTCCCCCCTCCCCCCCCCTCTACATCGAT
GTCAACGCTGCTATATCCTTCGCATTTTCTGTTCACCCTGCTACTGCCAT
TACAGCTCCTGCATATCGCACGCCCCTCTTTGCTTCATTCCCTCCCTCCC
TCTTTCCCTCCCTCCCTCCTCCCATCCGCCCCATACGTTCGACTGCCTCA
ACGCACACCCTCCCTCCCTCTCTTCCTCCCTCCCTCCCTCCCTCCCTCTT
TAGCGGCTACTGTCCATCTCCCCGCTCTTCCTCCTGGAGAAGAAGGCTTT
CTTGGAACGAGGGGTAGCGTCCGCGGAGAAGGAGCTCATGTGCTTGGCCA
TGGAATTGCCTCCCTTGCCCGTTAAATTAACGGCGCCTTTTAGACCGTTT
CCCTGTGAGGGAATGGAGGAAGAAAGGAAGGTAGGGAGGGTGTAAATTTC

Coding sequence (CDS) from alignment at scaffold_47:53969..54918+

>mRNA_10260 ID=mRNA_10260|Name=jgi.p|Nanoce1779_2|319206|organism=Nannochloropsis oceanica|type=CDS|length=516bp|location=Sequence derived from alignment at scaffold_47:53969..54918+ (Nannochloropsis oceanica)
ATGCTGCTACCGCTACCGCTGCTGCTGCTGCTGCTGTTGCTGCTGCGAAT
GCGGCTGTATATGCTGCCACTTCATCGTTATCTCTCCTCCTCCTCCTTCA
GCTCCCTTCTTTCCCCTTCTTTCCCGCCTCTTCGTCTTCGTTTCTGTCTC
CTCTTTCATCGTTTCCCCCCTCCCCCCCCCTCTACATCGATGTCAACGCT
GCTATATCCTTCGCATTTTCTGTTCACCCTGCTACTGCCATTACAGCTCC
TGCATATCGCACGCCCCTCTTTGCTTCATTCCCTCCCTCCCTCTTTCCCT
CCCTCCCTCCTCCCATCCGCCCCATACGTTCGACTGCCTCAACGCACACC
CTCCCTCCCTCTCTTCCTCCCTCCCTCCCTCCCTCCCTCTTTAGCGGCTA
CTGTCCATCTCCCCGCTCTTCCTCCTGGAGAAGAAGGCTTTCTTGGAACG
AGGGGTAGCGTCCGCGGAGAAGGAGCTCATGTGCTTGGCCATGGAATTGC
CTCCCTTGCCCGTTAA

Synonyms

Publications