jgi.p|Nanoce1779_2|661067, mRNA_10254 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|661067
Unique NamemRNA_10254
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1270
Alignment locationscaffold_47:16016..17428 -

Link to JBrowse

Properties
Property NameValue
TranscriptId661153
TrackFilteredModels2
ProteinId661067
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:16016..17428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|661067gene_10254Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|661067mRNA_10254-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10254CDS_10254Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10254 ID=mRNA_10254|Name=jgi.p|Nanoce1779_2|661067|organism=Nannochloropsis oceanica|type=mRNA|length=1270bp
CCGTCCGACTTGCCCGATTTTTGTTTTGATCTTGTGCGTGATGAGAGGGG
GAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAAAAAGGAGGAGGAGGAGAAGAAGGAGGAGGAGGA
GGAGGAGGAGGAAAGGATGGAGGAATATCTTCTTGCGATGCAGGCGCAGC
AGTCGGAGGCCACTTTAAAAATGGGCCAAGAACTGGCCGTGGCCCTGGGT
CTGGAGGAGGAGGAGGAGGAGGAGGAGGGAGGGAGGGAGGAAGGGAGGGA
AGGAGGGGCTCGGTTCATGTCGTCTGCGAGCATGAGCTTGGGCGAGGACG
AGGAGGACGGGGGGATGGAGGGAGGGAGGGAGGGAGGGGAGGAGGGGCTG
CGAGTGACGTCTTTTGGATTTGTGGATAATGCGGCTTTGGAGGAAAAGGG
GAGGAAGGGAGGGGAGGAGGAGGAGAGAGGAGAAGAGGGGGAAAGAGGAG
GAGGAGGAGAGGGAGGAGGAGGAGGTGGTGGCGGAGAAGAAGGAGGAGGA
GGAGGAGGAAGACTCCTACTTTCGACTGCATCCGCTCATGAGGAGGGAGG
GAGGGGCGTGTGGAAGGGAGGGAGCGAGGGAGCGAGGAGTGGAGAGGGGA
TGGAAGGGATAGCGTTTGTGGATTTCACTGCCTCTTCTTCATGCTCCTTG
TCGCCGACCCTTCAAGGAGGGGAGGCAGGGACGGAAGGACGGAGGGATGG
TGTGATGGGGGAGATGTTGGTGTCGCAGGCTGTGATGTTTGAGACCGCAC
GGGATAGAGAGGAGGAGGAGAAGGATGAGGAGGAGGAGGAGGGGAGGGAG
GGCGTGAATCCAGAGAGGATGATGCCGCCTCTTTTTGGAAACCCAGCTGG
TGTGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGATTGTGAAGGAGAAAA
GAATGGAGGAAATGGAAGAGGAGGAGGAGGAAGAGGAGGAGGAGGAAGAG
GAGGAAGAGTTTGATGAGGTTGGAGGGGAGAGGGGGATGGAGGAAAGGGA
GGAAGAGGTGAGGGAAATGCCGGCTTCAGTGCAGGTGCCACTTGAGGACG
GGGAGGAGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGGGGATGAA
GGGGAGGAGCTTCGGGAAGAGATGTTTGGGACTGCTGTTACGACCATCAC
GGGCGAGGAAGAGGAGGAAGAAGTGGTGGAGGAAGGGGGGGGGGGGGGGT
CAAGAGCAGGAGGAAGATGA
back to top

protein sequence of jgi.p|Nanoce1779_2|661067

>mRNA_10254-protein ID=mRNA_10254-protein|Name=jgi.p|Nanoce1779_2|661067|organism=Nannochloropsis oceanica|type=polypeptide|length=410bp
MRGGRRRRRRRRRRRRRRRRRRRRRKKEEEEKKEEEEEEEERMEEYLLAM
QAQQSEATLKMGQELAVALGLEEEEEEEEGGREEGREGGARFMSSASMSL
GEDEEDGGMEGGREGGEEGLRVTSFGFVDNAALEEKGRKGGEEEERGEEG
ERGGGGEGGGGGGGGEEGGGGGGRLLLSTASAHEEGGRGVWKGGSEGARS
GEGMEGIAFVDFTASSSCSLSPTLQGGEAGTEGRRDGVMGEMLVSQAVMF
ETARDREEEEKDEEEEEGREGVNPERMMPPLFGNPAGVEEEEEEEEEEIV
KEKRMEEMEEEEEEEEEEEEEEEFDEVGGERGMEEREEEVREMPASVQVP
LEDGEEGEGGREGGREGGDEGEELREEMFGTAVTTITGEEEEEEVVEEGG
GGGSRAGGR*
back to top

mRNA from alignment at scaffold_47:16016..17428-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10254 ID=mRNA_10254|Name=jgi.p|Nanoce1779_2|661067|organism=Nannochloropsis oceanica|type=mRNA|length=1413bp|location=Sequence derived from alignment at scaffold_47:16016..17428- (Nannochloropsis oceanica)
CCGTCCGACTTGCCCGATTTTTGTTTTGATCTTGTGCGTGATGAGAGGGG
GAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAAAAGCAGCATCACCGGCGGCAGCTGCAGCAGAAA
GAACAGAAAGAAGGAGAGGAGGAGCAAAACGAGATGGCGAAAGACGAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AGGAAGAAGAAGAGGAGGAGGAGGAGAAGAAGGAGGAGGAGGAGGAGGAG
GAGGAAAGGATGGAGGAATATCTTCTTGCGATGCAGGCGCAGCAGTCGGA
GGCCACTTTAAAAATGGGCCAAGAACTGGCCGTGGCCCTGGGTCTGGAGG
AGGAGGAGGAGGAGGAGGAGGGAGGGAGGGAGGAAGGGAGGGAAGGAGGG
GCTCGGTTCATGTCGTCTGCGAGCATGAGCTTGGGCGAGGACGAGGAGGA
CGGGGGGATGGAGGGAGGGAGGGAGGGAGGGGAGGAGGGGCTGCGAGTGA
CGTCTTTTGGATTTGTGGATAATGCGGCTTTGGAGGAAAAGGGGAGGAAG
GGAGGGGAGGAGGAGGAGAGAGGAGAAGAGGGGGAAAGAGGAGGAGGAGG
AGAGGGAGGAGGAGGAGGTGGTGGCGGAGAAGAAGGAGGAGGAGGAGGAG
GAAGACTCCTACTTTCGACTGCATCCGCTCATGAGGAGGGAGGGAGGGGC
GTGTGGAAGGGAGGGAGCGAGGGAGCGAGGAGTGGAGAGGGGATGGAAGG
GATAGCGTTTGTGGATTTCACTGCCTCTTCTTCATGCTCCTTGTCGCCGA
CCCTTCAAGGAGGGGAGGCAGGGACGGAAGGACGGAGGGATGGTGTGATG
GGGGAGATGTTGGTGTCGCAGGCTGTGATGTTTGAGACCGCACGGGATAG
AGAGGAGGAGGAGAAGGATGAGGAGGAGGAGGAGGGGAGGGAGGGCGTGA
ATCCAGAGAGGATGATGCCGCCTCTTTTTGGAAACCCAGCTGGTGTGGAG
GAGGAGGAAGAGGAGGAGGAGGAGGAGATTGTGAAGGAGAAAAGAATGGA
GGAAATGGAAGAGGAGGAGGAGGAAGAGGAGGAGGAGGAAGAGGAGGAAG
AGTTTGATGAGGTTGGAGGGGAGAGGGGGATGGAGGAAAGGGAGGAAGAG
GTGAGGGAAATGCCGGCTTCAGTGCAGGTGCCACTTGAGGACGGGGAGGA
GGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGGGGATGAAGGGGAGG
AGCTTCGGGAAGAGATGTTTGGGACTGCTGTTACGACCATCACGGGCGAG
GAAGAGGAGGAAGAAGTGGTGGAGGAAGGGGGGGGGGGGGGGTCAAGAGC
AGGAGGAAGATGA
back to top

Coding sequence (CDS) from alignment at scaffold_47:16016..17428-

>mRNA_10254 ID=mRNA_10254|Name=jgi.p|Nanoce1779_2|661067|organism=Nannochloropsis oceanica|type=CDS|length=2460bp|location=Sequence derived from alignment at scaffold_47:16016..17428- (Nannochloropsis oceanica)
AGGAGGAGGAGGAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGAAAGGATG
GAGGAATATCTTCTTGCGATGCAGGCGCAGCAGTCGGAGGCCACTTTAAA
AATGGGCCAAGAACTGGCCGTGGCCCTGGGTCTGGAGGAGGAGGAGGAGG
AGGAGGAGGGAGGGAGGGAGGAAGGGAGGGAAGGAGGGGCTCGGTTCATG
TCGTCTGCGAGCATGAGCTTGGGCGAGGACGAGGAGGACGGGGGGATGGA
GGGAGGGAGGGAGGGAGGGGAGGAGGGGCTGCGAGTGACGTCTTTTGGAT
TTGTGGATAATGCGGCTTTGGAGGAAAAGGGGAGGAAGGGAGGGGAGGAG
GAGGAGAGAGGAGAAGAGGGGGAAAGAGGAGGAGGAGGAGAGGGAGGAGG
AGGAGGTGGTGGCGGAGAAGAAGGAGGAGGAGGAGGAGGAAGACTCCTAC
TTTCGACTGCATCCGCTCATGAGGAGGGAGGGAGGGGCGTGTGGAAGGGA
GGGAGCGAGGGAGCGAGGAGTGGAGAGGGGATGGAAGGGATAGCGTTTGT
GGATTTCACTGCCTCTTCTTCATGCTCCTTGTCGCCGACCCTTCAAGGAG
GGGAGGCAGGGACGGAAGGACGGAGGGATGGTGTGATGGGGGAGATGTTG
GTGTCGCAGGCTGTGATGTTTGAGACCGCACGGGATAGAGAGGAGGAGGA
GAAGGATGAGGAGGAGGAGGAGGGGAGGGAGGGCGTGAATCCAGAGAGGA
TGATGCCGCCTCTTTTTGGAAACCCAGCTGGTGTGGAGGAGGAGGAAGAG
GAGGAGGAGGAGGAGATTGTGAAGGAGAAAAGAATGGAGGAAATGGAAGA
GGAGGAGGAGGAAGAGGAGGAGGAGGAAGAGGAGGAAGAGTTTGATGAGG
TTGGAGGGGAGAGGGGGATGGAGGAAAGGGAGGAAGAGGTGAGGGAAATG
CCGGCTTCAGTGCAGGTGCCACTTGAGGACGGGGAGGAGGGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGGGGGGATGAAGGGGAGGAGCTTCGGGAAG
AGATGTTTGGGACTGCTGTTACGACCATCACGGGCGAGGAAGAGGAGGAA
GAAGTGGTGGAGGAAGGGGGGGGGGGGGGGTCAAGAGCAGGAGGAAGATG
AATGAGAGGGGGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAAAAAGGAGGAGGAGGAGAAGAAG
GAGGAGGAGGAGGAGGAGGAGGAAAGGATGGAGGAATATCTTCTTGCGAT
GCAGGCGCAGCAGTCGGAGGCCACTTTAAAAATGGGCCAAGAACTGGCCG
TGGCCCTGGGTCTGGAGGAGGAGGAGGAGGAGGAGGAGGGAGGGAGGGAG
GAAGGGAGGGAAGGAGGGGCTCGGTTCATGTCGTCTGCGAGCATGAGCTT
GGGCGAGGACGAGGAGGACGGGGGGATGGAGGGAGGGAGGGAGGGAGGGG
AGGAGGGGCTGCGAGTGACGTCTTTTGGATTTGTGGATAATGCGGCTTTG
GAGGAAAAGGGGAGGAAGGGAGGGGAGGAGGAGGAGAGAGGAGAAGAGGG
GGAAAGAGGAGGAGGAGGAGAGGGAGGAGGAGGAGGTGGTGGCGGAGAAG
AAGGAGGAGGAGGAGGAGGAAGACTCCTACTTTCGACTGCATCCGCTCAT
GAGGAGGGAGGGAGGGGCGTGTGGAAGGGAGGGAGCGAGGGAGCGAGGAG
TGGAGAGGGGATGGAAGGGATAGCGTTTGTGGATTTCACTGCCTCTTCTT
CATGCTCCTTGTCGCCGACCCTTCAAGGAGGGGAGGCAGGGACGGAAGGA
CGGAGGGATGGTGTGATGGGGGAGATGTTGGTGTCGCAGGCTGTGATGTT
TGAGACCGCACGGGATAGAGAGGAGGAGGAGAAGGATGAGGAGGAGGAGG
AGGGGAGGGAGGGCGTGAATCCAGAGAGGATGATGCCGCCTCTTTTTGGA
AACCCAGCTGGTGTGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGATTGT
GAAGGAGAAAAGAATGGAGGAAATGGAAGAGGAGGAGGAGGAAGAGGAGG
AGGAGGAAGAGGAGGAAGAGTTTGATGAGGTTGGAGGGGAGAGGGGGATG
GAGGAAAGGGAGGAAGAGGTGAGGGAAATGCCGGCTTCAGTGCAGGTGCC
ACTTGAGGACGGGGAGGAGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GGGGGGATGAAGGGGAGGAGCTTCGGGAAGAGATGTTTGGGACTGCTGTT
ACGACCATCACGGGCGAGGAAGAGGAGGAAGAAGTGGTGGAGGAAGGGGG
GGGGGGGGGGTCAAGAGCAGGAGGAAGATGAATGAGAGGGGGAAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAAAA
back to top
Synonyms
Publications