jgi.p|Nanoce1779_2|609778, mRNA_10251 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609778
Unique NamemRNA_10251
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1168
Alignment locationscaffold_47:6592..7949 -

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Properties
Property NameValue
TranscriptId609864
TrackFilteredModels2
ProteinId609778
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:6592..7949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609778gene_10251Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609778mRNA_10251-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10251CDS_10251Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10251 ID=mRNA_10251|Name=jgi.p|Nanoce1779_2|609778|organism=Nannochloropsis oceanica|type=mRNA|length=1168bp
CTTCCATAAGACCTTGCTTTTTTAATTACATCAAAAATAAAACATTTTAC
TTTCCCCCTGTGTCCATGCCCTCGACATTGTGTCGATTTCTTTGCTCCTT
ACTTTTTCTGTGTGATGCCTTCCCCGCTTCCGTCATTCATGTGCTCTTGT
TTATCTGTTTTTCAATTTCGTTCCATTCCATCTCTCTCTCCTCGTCAATA
TGTACCGTTCCTCTCGATCCCTCCATCTTTACCCCATCTTTTCCCCTTTG
TTTTCTAACATTCACTTACTGATTCAACTACATACACGAACACACCTCCC
TCCGTAGTCTCCTCCCCCCCCCCTCACACGGCCATTTCCCCACCACCACT
TCCATTCACAGCAACCACCACAGGTTGTGAATGCGGAAATGCAGCAGCCT
CCTCCTCTCCTCTCATTCTCTTCCCTTGTGTTTCTTCCATTGCTCCCCCA
TCCCTCCTCAATGCCTTTCCTATATCGTCCAAGAACACCTTCACCTCCTC
CATCCCCTTTCCTTCCTCCTTCCCTCCCTCCTTCCCTCCCTCCCTCCTTC
CCGTCCACCCCTCAACGGCCGCAAAAACGTTTTCCTCCTCACTCCACAAT
AAGACCAGGGCATCAAGGCAGAGAGAGCGGGGCAAGGAGTCCTCCTCCGT
GCCTCGCAGCAGCAAGCCTACGTAGTCTTCGAAAGCACGACGGGCAGGAC
TCGGTTCTCCGCTTGAGGCATGGCAGGGGTACGCGCATCTTCCCTCATCA
TACGCTGCCGTCAGTACTGGCAAAACAATTTTTTCTCCTCCCTCATTCCC
TCCTTCTCCTCTTTCGTCCCCCTCCCCTCCATGTCTACCAGTGGCCGCTT
CTGAGGTGGATGAGGAAGAGGAAGGGAGGGAGGAAGGAGTAGCCGCAGCT
GCAGCTTCTCCTGACGAAAGGGAAGGGAGACTTGCAGCAGCTGCAGCAGC
CGCAGCAGCAGCGGTAGGGGCAAGGAGGTTGGACTGGTACGTGTTGACAG
TAACATAAGAAGGGGCAGAGGGAGGGAGGGAGGGAGGGAGTGAGGGAGGG
GTAGCGTCCTCTTCCTCCTCCTTCTCCCGTCTTGCCTCCGACTCCAGAGG
CGACTCTTCTGGTTGATTTTGTTGTTGTTGTTGTTGCTGCTGCTGCTGCT
GCTGGTGGTGGTGGTGCT
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protein sequence of jgi.p|Nanoce1779_2|609778

>mRNA_10251-protein ID=mRNA_10251-protein|Name=jgi.p|Nanoce1779_2|609778|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MQQPPPLLSFSSLVFLPLLPHPSSMPFLYRPRTPSPPPSPFLPPSLPPSL
PPSFPSTPQRPQKRFPPHSTIRPGHQGRESGARSPPPCLAAASLRSLRKH
DGQDSVLRLRHGRGTRIFPHHTLPSVLAKQFFLLPHSLLLLFRPPPLHVY
QWPLLRWMRKRKGGRKE*
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mRNA from alignment at scaffold_47:6592..7949-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10251 ID=mRNA_10251|Name=jgi.p|Nanoce1779_2|609778|organism=Nannochloropsis oceanica|type=mRNA|length=1358bp|location=Sequence derived from alignment at scaffold_47:6592..7949- (Nannochloropsis oceanica)
CTTCCATAAGACCTTGCTTTTTTAATTACATCAAAAATAAAACATTTTAC
TTTCCCCCTGTGTCCATGCCCTCGACATTGTGTCGATTTCTTTGCTCCTT
ACTTTTTCTGTGTGATGCCTTCCCCGCTTCCGTCATTCATGTGCTCTTGT
TTATCTGTTTTTCAATTTCGTTCCATTCCATCTCTCTCTCCTCGTCAATA
TGTACCGTTCCTCTCGATCCCTCCATCTTTACCCCATCTTTTCCCCTTTG
TTTTCTAACATTCACTTACTGATTCAACTACATACACGAACACACCTCCC
TCCGTAGTCTCCTCCCCCCCCCCTCACACGGCCATTTCCCCACCACCACT
TCCATTCACAGCAACCACCACAGGTTGTGAATGCGGAAATGCAGCAGCCT
CCTCCTCTCCTCTCATTCTCTTCCCTTGTGTTTCTTCCATTGCTCCCCCA
TCCCTCCTCAATGCCTTTCCTATATCGTCCAAGAACACCTTCACCTCCTC
CATCCCCTTTCCTTCCTCCTTCCCTCCCTCCTTCCCTCCCTCCCTCCTTC
CCGTCCACCCCTCAACGGCCGCAAAAACGTTTTCCTCCTCACTCCACAAT
AAGACCAGGGCATCAAGGCAGAGAGAGCGGGGCAAGGAGTCCTCCTCCGT
GCCTCGCAGCAGCAAGCCTACGTAGTCTTCGAAAGCACGACGGGCAGGAC
TGACGGGAAGGAGGGAGCAAGGGAGGGAGGGAGGGAGGGAGGGAGGAGGA
CGAGGGTAAGAAGGTGAGTGATTGAAATAAGTGCATTGTCCAATCCCTTT
TAGATAGCCATGACAATAATGAGGAAGGATGGAGGGAGAAAGGGAGGGAG
GGAATGAAGGAGGGAAGGTCATCTATAGATCGTACCTACCTCGGTTCTCC
GCTTGAGGCATGGCAGGGGTACGCGCATCTTCCCTCATCATACGCTGCCG
TCAGTACTGGCAAAACAATTTTTTCTCCTCCCTCATTCCCTCCTTCTCCT
CTTTCGTCCCCCTCCCCTCCATGTCTACCAGTGGCCGCTTCTGAGGTGGA
TGAGGAAGAGGAAGGGAGGGAGGAAGGAGTAGCCGCAGCTGCAGCTTCTC
CTGACGAAAGGGAAGGGAGACTTGCAGCAGCTGCAGCAGCCGCAGCAGCA
GCGGTAGGGGCAAGGAGGTTGGACTGGTACGTGTTGACAGTAACATAAGA
AGGGGCAGAGGGAGGGAGGGAGGGAGGGAGTGAGGGAGGGGTAGCGTCCT
CTTCCTCCTCCTTCTCCCGTCTTGCCTCCGACTCCAGAGGCGACTCTTCT
GGTTGATTTTGTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGGTGGTG
GTGGTGCT
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Coding sequence (CDS) from alignment at scaffold_47:6592..7949-

>mRNA_10251 ID=mRNA_10251|Name=jgi.p|Nanoce1779_2|609778|organism=Nannochloropsis oceanica|type=CDS|length=1008bp|location=Sequence derived from alignment at scaffold_47:6592..7949- (Nannochloropsis oceanica)
CTCGGTTCTCCGCTTGAGGCATGGCAGGGGTACGCGCATCTTCCCTCATC
ATACGCTGCCGTCAGTACTGGCAAAACAATTTTTTCTCCTCCCTCATTCC
CTCCTTCTCCTCTTTCGTCCCCCTCCCCTCCATGTCTACCAGTGGCCGCT
TCTGAGGTGGATGAGGAAGAGGAAGGGAGGGAGGAAGGAGTAGATGCAGC
AGCCTCCTCCTCTCCTCTCATTCTCTTCCCTTGTGTTTCTTCCATTGCTC
CCCCATCCCTCCTCAATGCCTTTCCTATATCGTCCAAGAACACCTTCACC
TCCTCCATCCCCTTTCCTTCCTCCTTCCCTCCCTCCTTCCCTCCCTCCCT
CCTTCCCGTCCACCCCTCAACGGCCGCAAAAACGTTTTCCTCCTCACTCC
ACAATAAGACCAGGGCATCAAGGCAGAGAGAGCGGGGCAAGGAGTCCTCC
TCCGTGCCTCGCAGCAGCAAGCCTACGTAGTCTTCGAAAGCACGACGGGC
AGGACTCGGTTCTCCGCTTGAGGCATGGCAGGGGTACGCGCATCTTCCCT
CATCATACGCTGCCGTCAGTACTGGCAAAACAATTTTTTCTCCTCCCTCA
TTCCCTCCTTCTCCTCTTTCGTCCCCCTCCCCTCCATGTCTACCAGTGGC
CGCTTCTGAGGTGGATGAGGAAGAGGAAGGGAGGGAGGAAGGAGTAGATG
CAGCAGCCTCCTCCTCTCCTCTCATTCTCTTCCCTTGTGTTTCTTCCATT
GCTCCCCCATCCCTCCTCAATGCCTTTCCTATATCGTCCAAGAACACCTT
CACCTCCTCCATCCCCTTTCCTTCCTCCTTCCCTCCCTCCTTCCCTCCCT
CCCTCCTTCCCGTCCACCCCTCAACGGCCGCAAAAACGTTTTCCTCCTCA
CTCCACAATAAGACCAGGGCATCAAGGCAGAGAGAGCGGGGCAAGGAGTC
CTCCTCCGTGCCTCGCAGCAGCAAGCCTACGTAGTCTTCGAAAGCACGAC
GGGCAGGA
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Synonyms
Publications