jgi.p|Nanoce1779_2|575058, mRNA_1025 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575058
Unique Name	mRNA_1025
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1301
Alignment location	scaffold_2:1038007..1039307 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	575144
Track	FilteredModels2
ProteinId	575058

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1038007..1039307 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575058	gene_1025	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575058	mRNA_1025-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1025	CDS_1025	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1038007..1039307+
coding sequence from alignment at scaffold_2:1038007..1039307+

mRNA sequence

>mRNA_1025 ID=mRNA_1025|Name=jgi.p|Nanoce1779_2|575058|organism=Nannochloropsis oceanica|type=mRNA|length=1301bp
GGAGGGAGGGAGGGGGGGGCGACGGCGACGGGTGCGAGGAAGTGGCTCTT
GAAGCCAATGGTGTCCTTGTTGGAGGCAACATTGCACGTCGAGGCCCAAT
TACAAGCGAAAGACATCGCCATGATTGCGTGGGCATTCGGCAAGATCTCT
CCGATGGATTGGAATGCCATAGGTCCGCATGTGGACATGCTTTGTGCCGT
CCTTGCGTCCTCAGCGCTGAAATCCATTCGCCGATTCAGTGCCCAGGACC
TTGCGGAGCTATCTGTTGGGGTGGTTGCGATGCAATACGATAATGCCAAC
CTCATGCAACTCGTCGCTTACGAAGCCACGCGGAAACTCCGGTCCTTCTC
CCATCGCGAGCTCAGCAATATTATTTGGGCTTATGGAAAGGTTTTCCGTC
GTCCCCGGAAGTTTGTGTTGGCGGCAGCAGCGGAGGCACGGGTAAGGCTC
CCTCATTTCACCCCCACGGAGCTGGCGAACGTGGCGTGGGCATTGACAGT
GTTGGAGGTATATGATGTCGGGCTTTTCAAGGAAGTTTTTGCGAGGGCAG
CGGCGGATGAGGGACTGCAGATGCTACAGGAAGGGGATTTGAATCAACTG
TATCAAGTATATAGCCTGTTGAGGTTACAGGCACCCGAGGCCGTGAAAGG
CATAGGAAGGGAGTTGTTGATGGCCATGGAAGCAGCTTGGGCGACAAGCA
AGGAGAAGGAGAAGAGAACTACCAAGCGGCAGGCGGCCGTGGTGAAGGTC
TTGGAGAATTTGCAGATCCGTTACGAGGTGGAAGCGGAGCATGACATTGA
TATCCTCTTACCCGACCATGGGGTTGCCTTGGAAGTGGATGGCCCCGCAC
ACTTTTTGAGAAACACTGGACATCCGATGGGACATACGATAATCAAACGG
CGGCTATTGGAATTGATGGGGTATAATGTCATCTCGGTGCCACATTTTGA
GTTTGATCGGATTCCTTACTGGTCGTCCATGGAACTGAAGAGGTACTTGC
AACGGAAGTGTGAGACGGACGAGGTGCTCTATTTCAATGACTTGGACTCA
TCCAAACATAAGCCTTATCCGCCTCGGGGTAAGAAGACGCGGTTCGATTG
ACTAGAATCTCTGAGTGTGGACGAGAATTTAGCAATGAGGGAGGGGGAAG
GGCGCGAGAGTGTTTAAGCGCGTGTGTAGAAGAAAAACATGCCGTTTTGA
GCGTTATGGAAGGCGAGAGCGAACGAGAGCAAATGCGGTGTTTTGTATAA
ATAGTCTGTGCGTGGATGAGTTTAAAGTTGGGTCATGTAGACGCAGGGGA
T

protein sequence of jgi.p|Nanoce1779_2|575058

>mRNA_1025-protein ID=mRNA_1025-protein|Name=jgi.p|Nanoce1779_2|575058|organism=Nannochloropsis oceanica|type=polypeptide|length=348bp
MVSLLEATLHVEAQLQAKDIAMIAWAFGKISPMDWNAIGPHVDMLCAVLA
SSALKSIRRFSAQDLAELSVGVVAMQYDNANLMQLVAYEATRKLRSFSHR
ELSNIIWAYGKVFRRPRKFVLAAAAEARVRLPHFTPTELANVAWALTVLE
VYDVGLFKEVFARAAADEGLQMLQEGDLNQLYQVYSLLRLQAPEAVKGIG
RELLMAMEAAWATSKEKEKRTTKRQAAVVKVLENLQIRYEVEAEHDIDIL
LPDHGVALEVDGPAHFLRNTGHPMGHTIIKRRLLELMGYNVISVPHFEFD
RIPYWSSMELKRYLQRKCETDEVLYFNDLDSSKHKPYPPRGKKTRFD*

mRNA from alignment at scaffold_2:1038007..1039307+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1025 ID=mRNA_1025|Name=jgi.p|Nanoce1779_2|575058|organism=Nannochloropsis oceanica|type=mRNA|length=1301bp|location=Sequence derived from alignment at scaffold_2:1038007..1039307+ (Nannochloropsis oceanica)
GGAGGGAGGGAGGGGGGGGCGACGGCGACGGGTGCGAGGAAGTGGCTCTT
GAAGCCAATGGTGTCCTTGTTGGAGGCAACATTGCACGTCGAGGCCCAAT
TACAAGCGAAAGACATCGCCATGATTGCGTGGGCATTCGGCAAGATCTCT
CCGATGGATTGGAATGCCATAGGTCCGCATGTGGACATGCTTTGTGCCGT
CCTTGCGTCCTCAGCGCTGAAATCCATTCGCCGATTCAGTGCCCAGGACC
TTGCGGAGCTATCTGTTGGGGTGGTTGCGATGCAATACGATAATGCCAAC
CTCATGCAACTCGTCGCTTACGAAGCCACGCGGAAACTCCGGTCCTTCTC
CCATCGCGAGCTCAGCAATATTATTTGGGCTTATGGAAAGGTTTTCCGTC
GTCCCCGGAAGTTTGTGTTGGCGGCAGCAGCGGAGGCACGGGTAAGGCTC
CCTCATTTCACCCCCACGGAGCTGGCGAACGTGGCGTGGGCATTGACAGT
GTTGGAGGTATATGATGTCGGGCTTTTCAAGGAAGTTTTTGCGAGGGCAG
CGGCGGATGAGGGACTGCAGATGCTACAGGAAGGGGATTTGAATCAACTG
TATCAAGTATATAGCCTGTTGAGGTTACAGGCACCCGAGGCCGTGAAAGG
CATAGGAAGGGAGTTGTTGATGGCCATGGAAGCAGCTTGGGCGACAAGCA
AGGAGAAGGAGAAGAGAACTACCAAGCGGCAGGCGGCCGTGGTGAAGGTC
TTGGAGAATTTGCAGATCCGTTACGAGGTGGAAGCGGAGCATGACATTGA
TATCCTCTTACCCGACCATGGGGTTGCCTTGGAAGTGGATGGCCCCGCAC
ACTTTTTGAGAAACACTGGACATCCGATGGGACATACGATAATCAAACGG
CGGCTATTGGAATTGATGGGGTATAATGTCATCTCGGTGCCACATTTTGA
GTTTGATCGGATTCCTTACTGGTCGTCCATGGAACTGAAGAGGTACTTGC
AACGGAAGTGTGAGACGGACGAGGTGCTCTATTTCAATGACTTGGACTCA
TCCAAACATAAGCCTTATCCGCCTCGGGGTAAGAAGACGCGGTTCGATTG
ACTAGAATCTCTGAGTGTGGACGAGAATTTAGCAATGAGGGAGGGGGAAG
GGCGCGAGAGTGTTTAAGCGCGTGTGTAGAAGAAAAACATGCCGTTTTGA
GCGTTATGGAAGGCGAGAGCGAACGAGAGCAAATGCGGTGTTTTGTATAA
ATAGTCTGTGCGTGGATGAGTTTAAAGTTGGGTCATGTAGACGCAGGGGA
T

Coding sequence (CDS) from alignment at scaffold_2:1038007..1039307+

>mRNA_1025 ID=mRNA_1025|Name=jgi.p|Nanoce1779_2|575058|organism=Nannochloropsis oceanica|type=CDS|length=1044bp|location=Sequence derived from alignment at scaffold_2:1038007..1039307+ (Nannochloropsis oceanica)
ATGGTGTCCTTGTTGGAGGCAACATTGCACGTCGAGGCCCAATTACAAGC
GAAAGACATCGCCATGATTGCGTGGGCATTCGGCAAGATCTCTCCGATGG
ATTGGAATGCCATAGGTCCGCATGTGGACATGCTTTGTGCCGTCCTTGCG
TCCTCAGCGCTGAAATCCATTCGCCGATTCAGTGCCCAGGACCTTGCGGA
GCTATCTGTTGGGGTGGTTGCGATGCAATACGATAATGCCAACCTCATGC
AACTCGTCGCTTACGAAGCCACGCGGAAACTCCGGTCCTTCTCCCATCGC
GAGCTCAGCAATATTATTTGGGCTTATGGAAAGGTTTTCCGTCGTCCCCG
GAAGTTTGTGTTGGCGGCAGCAGCGGAGGCACGGGTAAGGCTCCCTCATT
TCACCCCCACGGAGCTGGCGAACGTGGCGTGGGCATTGACAGTGTTGGAG
GTATATGATGTCGGGCTTTTCAAGGAAGTTTTTGCGAGGGCAGCGGCGGA
TGAGGGACTGCAGATGCTACAGGAAGGGGATTTGAATCAACTGTATCAAG
TATATAGCCTGTTGAGGTTACAGGCACCCGAGGCCGTGAAAGGCATAGGA
AGGGAGTTGTTGATGGCCATGGAAGCAGCTTGGGCGACAAGCAAGGAGAA
GGAGAAGAGAACTACCAAGCGGCAGGCGGCCGTGGTGAAGGTCTTGGAGA
ATTTGCAGATCCGTTACGAGGTGGAAGCGGAGCATGACATTGATATCCTC
TTACCCGACCATGGGGTTGCCTTGGAAGTGGATGGCCCCGCACACTTTTT
GAGAAACACTGGACATCCGATGGGACATACGATAATCAAACGGCGGCTAT
TGGAATTGATGGGGTATAATGTCATCTCGGTGCCACATTTTGAGTTTGAT
CGGATTCCTTACTGGTCGTCCATGGAACTGAAGAGGTACTTGCAACGGAA
GTGTGAGACGGACGAGGTGCTCTATTTCAATGACTTGGACTCATCCAAAC
ATAAGCCTTATCCGCCTCGGGGTAAGAAGACGCGGTTCGATTGA

Synonyms

Publications