jgi.p|Nanoce1779_2|318612, mRNA_10249 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|318612
Unique NamemRNA_10249
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length378
Alignment locationscaffold_47:960..1337 -

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Properties
Property NameValue
TranscriptId318698
TrackFilteredModels2
ProteinId318612
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:960..1337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|318612gene_10249Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|318612mRNA_10249-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10249CDS_10249Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10249 ID=mRNA_10249|Name=jgi.p|Nanoce1779_2|318612|organism=Nannochloropsis oceanica|type=mRNA|length=378bp
GGCGGGAAACGAAGGAAATGGCGGAGGGGGGATCGAGAAACATCGCGCGA
CGTAAATATGTGGGATTGTGGTCTTCTTCGCTTCCGTTCTCATCAGTTTC
GCACGGCGTGGCTTTTTCTACAGTGCTCGTCGTTGTTCCCTTCCTCCCTC
GCGATGACCATCATCATTCACTGCCATCCCGTAATAAGCCAGAATGCAGC
GTATCCTCTCCCAATTATTGGTGGTGATGAATCCTTGTTATCCCACTCTT
TTCTTCGGATAAATACGCCGTGGGGAGGGGAGGTCTGTGGTAGTAGTGGT
AGTTAGTTAGTCACGGATTGGAATTCCTTGTAAAACTGCTGCTGTCCTTG
TCTGAGACAGGCGAAGAAATAGGAGAGA
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protein sequence of jgi.p|Nanoce1779_2|318612

>mRNA_10249-protein ID=mRNA_10249-protein|Name=jgi.p|Nanoce1779_2|318612|organism=Nannochloropsis oceanica|type=polypeptide|length=83bp
MWDCGLLRFRSHQFRTAWLFLQCSSLFPSSLAMTIIIHCHPVISQNAAYP
LPIIGGDESLLSHSFLRINTPWGGEVCGSSGS*
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mRNA from alignment at scaffold_47:960..1337-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10249 ID=mRNA_10249|Name=jgi.p|Nanoce1779_2|318612|organism=Nannochloropsis oceanica|type=mRNA|length=378bp|location=Sequence derived from alignment at scaffold_47:960..1337- (Nannochloropsis oceanica)
GGCGGGAAACGAAGGAAATGGCGGAGGGGGGATCGAGAAACATCGCGCGA
CGTAAATATGTGGGATTGTGGTCTTCTTCGCTTCCGTTCTCATCAGTTTC
GCACGGCGTGGCTTTTTCTACAGTGCTCGTCGTTGTTCCCTTCCTCCCTC
GCGATGACCATCATCATTCACTGCCATCCCGTAATAAGCCAGAATGCAGC
GTATCCTCTCCCAATTATTGGTGGTGATGAATCCTTGTTATCCCACTCTT
TTCTTCGGATAAATACGCCGTGGGGAGGGGAGGTCTGTGGTAGTAGTGGT
AGTTAGTTAGTCACGGATTGGAATTCCTTGTAAAACTGCTGCTGTCCTTG
TCTGAGACAGGCGAAGAAATAGGAGAGA
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Coding sequence (CDS) from alignment at scaffold_47:960..1337-

>mRNA_10249 ID=mRNA_10249|Name=jgi.p|Nanoce1779_2|318612|organism=Nannochloropsis oceanica|type=CDS|length=249bp|location=Sequence derived from alignment at scaffold_47:960..1337- (Nannochloropsis oceanica)
ATGTGGGATTGTGGTCTTCTTCGCTTCCGTTCTCATCAGTTTCGCACGGC
GTGGCTTTTTCTACAGTGCTCGTCGTTGTTCCCTTCCTCCCTCGCGATGA
CCATCATCATTCACTGCCATCCCGTAATAAGCCAGAATGCAGCGTATCCT
CTCCCAATTATTGGTGGTGATGAATCCTTGTTATCCCACTCTTTTCTTCG
GATAAATACGCCGTGGGGAGGGGAGGTCTGTGGTAGTAGTGGTAGTTAG
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Synonyms
Publications