jgi.p|Nanoce1779_2|575057, mRNA_1024 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575057
Unique NamemRNA_1024
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1261
Alignment locationscaffold_2:1036758..1038018 +

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Properties
Property NameValue
TranscriptId575143
TrackFilteredModels2
ProteinId575057
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1036758..1038018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575057gene_1024Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575057mRNA_1024-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1024CDS_1024Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1024 ID=mRNA_1024|Name=jgi.p|Nanoce1779_2|575057|organism=Nannochloropsis oceanica|type=mRNA|length=1261bp
CAGGCGACAAAGCAGTTCCTTGAATGGTGGCAAGGGTAGCGCGGGCATAT
AGCACTCTATCCAGCCTGCCAATTCGACTAGCACCATGCCAAGACCAGCC
GAATTAGAGGGAAATCAGACCTCAAAAGGTGCCCGCAGGCGGCCACGGGC
AGCAACAGCAGTGAGCATCACATCTATCGCCACTCTTTTGTGTTGCCTGC
AGCATGTTACACACACCGCCGCTTTTCAATCCCTCCTCCCCCAACCACCA
CCAATGCCAGCAGCACCACCATGCCACCGCAGCCGACGAAGACCGACCTC
CTTCTTTTCCTCCATTGCGGGCAGCAGCAGCGATGGAATCGGCTTCGGCA
TCGATTTTGACGAGCTATTGCGCAGCGGCACCAATAACGGCAGCCCCTTC
GGGCCTACCTCCGCGCCAACGACCTGGCGAGAACTGACATCACCTCGCCT
TTCTAAGCAGCAGCAGAAGCACCAGCACCAGCACCAGCACACGCCTTTCC
CTACTCAACCATCATCCACCAGGCCTAAGGCTGCTGGTATCGCTTCCCCT
GCAGGCCAACAGCAACCACAACATCGCACCACGAAGCCCTCCTCCTCTTC
ATCCTCCTCTTCCTCCTCCTTCCCCGGCAGATGGCAAGCCACCAAAGACG
AATCCCAACACATGCAAGACCGCATCCTCTGTGCCCAATCCGATCCCTCC
GAGATGTTGCGCCTTCTGTTCGACAACCCTCTCGCCTGCAACCACGTGAA
TATCTGCACCGTCCTTCACCGTTGTGGCAAGCTTTCAGGGACTCCTAGTC
TTACGCCGGCGGTCGACAATGCCATAACCCAACGCCTCCTCCCCGTCCTC
ACCCTCGTTCTCCCAGCGTGCAAAGGCCGGCAGCTGTGTAACGTAGCATG
GGCGCTCGTCCGCCTGGGCATGCCAGATGAGGAGCTCTTCTCCCGAATAA
TTAGTCGACTCCAAGCGAACAACGGCGCGTTGCTCGAAGCGTGTAATGCG
GGAGAGCTGGCGATGGTTCTATGGGCCATAGCTTCCGCAGGAATGACACT
ACAGTATGCGTCATTTTTTGAAATGGCTGCAGAACCCATAGCGGCGAAGG
CTGTGGGTCTAAGGCCAAGGGAAATCGGTTTGATCACCTGGGCGTATGCG
ACATGGCTCGGAAATGACATGAAACTGAATGGACAGCAGCTTCAAGGGTT
GGGGAATGTTATGCATGGCAGTTTTGTTGAGACTGCTGAAGGGAGGAAAG
GAGGGAGGGAG
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protein sequence of jgi.p|Nanoce1779_2|575057

>mRNA_1024-protein ID=mRNA_1024-protein|Name=jgi.p|Nanoce1779_2|575057|organism=Nannochloropsis oceanica|type=polypeptide|length=392bp
MPRPAELEGNQTSKGARRRPRAATAVSITSIATLLCCLQHVTHTAAFQSL
LPQPPPMPAAPPCHRSRRRPTSFFSSIAGSSSDGIGFGIDFDELLRSGTN
NGSPFGPTSAPTTWRELTSPRLSKQQQKHQHQHQHTPFPTQPSSTRPKAA
GIASPAGQQQPQHRTTKPSSSSSSSSSSFPGRWQATKDESQHMQDRILCA
QSDPSEMLRLLFDNPLACNHVNICTVLHRCGKLSGTPSLTPAVDNAITQR
LLPVLTLVLPACKGRQLCNVAWALVRLGMPDEELFSRIISRLQANNGALL
EACNAGELAMVLWAIASAGMTLQYASFFEMAAEPIAAKAVGLRPREIGLI
TWAYATWLGNDMKLNGQQLQGLGNVMHGSFVETAEGRKGGRE
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mRNA from alignment at scaffold_2:1036758..1038018+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1024 ID=mRNA_1024|Name=jgi.p|Nanoce1779_2|575057|organism=Nannochloropsis oceanica|type=mRNA|length=1261bp|location=Sequence derived from alignment at scaffold_2:1036758..1038018+ (Nannochloropsis oceanica)
CAGGCGACAAAGCAGTTCCTTGAATGGTGGCAAGGGTAGCGCGGGCATAT
AGCACTCTATCCAGCCTGCCAATTCGACTAGCACCATGCCAAGACCAGCC
GAATTAGAGGGAAATCAGACCTCAAAAGGTGCCCGCAGGCGGCCACGGGC
AGCAACAGCAGTGAGCATCACATCTATCGCCACTCTTTTGTGTTGCCTGC
AGCATGTTACACACACCGCCGCTTTTCAATCCCTCCTCCCCCAACCACCA
CCAATGCCAGCAGCACCACCATGCCACCGCAGCCGACGAAGACCGACCTC
CTTCTTTTCCTCCATTGCGGGCAGCAGCAGCGATGGAATCGGCTTCGGCA
TCGATTTTGACGAGCTATTGCGCAGCGGCACCAATAACGGCAGCCCCTTC
GGGCCTACCTCCGCGCCAACGACCTGGCGAGAACTGACATCACCTCGCCT
TTCTAAGCAGCAGCAGAAGCACCAGCACCAGCACCAGCACACGCCTTTCC
CTACTCAACCATCATCCACCAGGCCTAAGGCTGCTGGTATCGCTTCCCCT
GCAGGCCAACAGCAACCACAACATCGCACCACGAAGCCCTCCTCCTCTTC
ATCCTCCTCTTCCTCCTCCTTCCCCGGCAGATGGCAAGCCACCAAAGACG
AATCCCAACACATGCAAGACCGCATCCTCTGTGCCCAATCCGATCCCTCC
GAGATGTTGCGCCTTCTGTTCGACAACCCTCTCGCCTGCAACCACGTGAA
TATCTGCACCGTCCTTCACCGTTGTGGCAAGCTTTCAGGGACTCCTAGTC
TTACGCCGGCGGTCGACAATGCCATAACCCAACGCCTCCTCCCCGTCCTC
ACCCTCGTTCTCCCAGCGTGCAAAGGCCGGCAGCTGTGTAACGTAGCATG
GGCGCTCGTCCGCCTGGGCATGCCAGATGAGGAGCTCTTCTCCCGAATAA
TTAGTCGACTCCAAGCGAACAACGGCGCGTTGCTCGAAGCGTGTAATGCG
GGAGAGCTGGCGATGGTTCTATGGGCCATAGCTTCCGCAGGAATGACACT
ACAGTATGCGTCATTTTTTGAAATGGCTGCAGAACCCATAGCGGCGAAGG
CTGTGGGTCTAAGGCCAAGGGAAATCGGTTTGATCACCTGGGCGTATGCG
ACATGGCTCGGAAATGACATGAAACTGAATGGACAGCAGCTTCAAGGGTT
GGGGAATGTTATGCATGGCAGTTTTGTTGAGACTGCTGAAGGGAGGAAAG
GAGGGAGGGAG
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Coding sequence (CDS) from alignment at scaffold_2:1036758..1038018+

>mRNA_1024 ID=mRNA_1024|Name=jgi.p|Nanoce1779_2|575057|organism=Nannochloropsis oceanica|type=CDS|length=1176bp|location=Sequence derived from alignment at scaffold_2:1036758..1038018+ (Nannochloropsis oceanica)
ATGCCAAGACCAGCCGAATTAGAGGGAAATCAGACCTCAAAAGGTGCCCG
CAGGCGGCCACGGGCAGCAACAGCAGTGAGCATCACATCTATCGCCACTC
TTTTGTGTTGCCTGCAGCATGTTACACACACCGCCGCTTTTCAATCCCTC
CTCCCCCAACCACCACCAATGCCAGCAGCACCACCATGCCACCGCAGCCG
ACGAAGACCGACCTCCTTCTTTTCCTCCATTGCGGGCAGCAGCAGCGATG
GAATCGGCTTCGGCATCGATTTTGACGAGCTATTGCGCAGCGGCACCAAT
AACGGCAGCCCCTTCGGGCCTACCTCCGCGCCAACGACCTGGCGAGAACT
GACATCACCTCGCCTTTCTAAGCAGCAGCAGAAGCACCAGCACCAGCACC
AGCACACGCCTTTCCCTACTCAACCATCATCCACCAGGCCTAAGGCTGCT
GGTATCGCTTCCCCTGCAGGCCAACAGCAACCACAACATCGCACCACGAA
GCCCTCCTCCTCTTCATCCTCCTCTTCCTCCTCCTTCCCCGGCAGATGGC
AAGCCACCAAAGACGAATCCCAACACATGCAAGACCGCATCCTCTGTGCC
CAATCCGATCCCTCCGAGATGTTGCGCCTTCTGTTCGACAACCCTCTCGC
CTGCAACCACGTGAATATCTGCACCGTCCTTCACCGTTGTGGCAAGCTTT
CAGGGACTCCTAGTCTTACGCCGGCGGTCGACAATGCCATAACCCAACGC
CTCCTCCCCGTCCTCACCCTCGTTCTCCCAGCGTGCAAAGGCCGGCAGCT
GTGTAACGTAGCATGGGCGCTCGTCCGCCTGGGCATGCCAGATGAGGAGC
TCTTCTCCCGAATAATTAGTCGACTCCAAGCGAACAACGGCGCGTTGCTC
GAAGCGTGTAATGCGGGAGAGCTGGCGATGGTTCTATGGGCCATAGCTTC
CGCAGGAATGACACTACAGTATGCGTCATTTTTTGAAATGGCTGCAGAAC
CCATAGCGGCGAAGGCTGTGGGTCTAAGGCCAAGGGAAATCGGTTTGATC
ACCTGGGCGTATGCGACATGGCTCGGAAATGACATGAAACTGAATGGACA
GCAGCTTCAAGGGTTGGGGAATGTTATGCATGGCAGTTTTGTTGAGACTG
CTGAAGGGAGGAAAGGAGGGAGGGAG
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Synonyms
Publications