jgi.p|Nanoce1779_2|575053, mRNA_1023 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575053
Unique NamemRNA_1023
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length875
Alignment locationscaffold_2:1034726..1035600 -

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Properties
Property NameValue
TranscriptId575139
TrackFilteredModels2
ProteinId575053
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1034726..1035600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575053gene_1023Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575053mRNA_1023-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1023CDS_1023Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1023 ID=mRNA_1023|Name=jgi.p|Nanoce1779_2|575053|organism=Nannochloropsis oceanica|type=mRNA|length=875bp
AATGACGCGGACGACACGGTGATGGAGGTGTGTTGGGGCAGCACTGGCTC
CAGCACAGTAGCAGCCGCAACAGTGGCAGCGATCGTAGCGGTCGTAGCTG
TGGCTTCGGTGGCAACATTGGCAACGGAAGCCTCAGGCGTATTACGGCCG
GCCTTGCAAATGGGAGCATTTCTCCTCTCCTGGTTCAGCCTCTTGTTCTT
CTACCGAGCTTTCCATCTTGCGCGGTGCAGCTTTTATTGAAGTAGATTTC
AATCATGACACAAGCTAATTATAACATCATTCACTCATCTTCTTTTATCC
AACTACCCACAACCGTCAATCAAATAACACAGGGCAAGCGGACGAAGAAG
GTTGGGATTTGCGGGAAGTATGGCACACGCTATGGTGCCTCCCTCCGTAA
GATCATCAAGAAGATCGAAGTTTCCCAGCACTCCAAGTATACATGCGTTT
TCTGCGGGAAGGACAACGTGAAGCGAGAGGTGGTGGGCATCTGGAAGTGC
GGCTCGTGCAACAAGAGCATGGCGGGCGGGGCTTACTCCCTTTCTACTGC
TGCCGCTGTCCAAGTCCGCTCGACCCTGGCCCGCCTACGCAAGGCCAAGG
CTGAGGGCGTCTAAGCACCCTTTCTTAGTTTGTCGTCAGTGGAGTGATCA
GTCGAAGAAGGAGGAAAAGAGGGATCGGGGGAAAGCGAGGGCTTTGGACG
AAACAATGGTTGGCGTCGGTTTGAAACAAACCGTGACCGAATGGGTCGTC
GGCGCCTGCTTGGCATGAAAACTTATCACAAAGAAAGAATCACCCAGGCA
GACATAAATGAAAAATGGTAGAAAGAAAGGGCGAAATATTACAGTTCGTT
TTACCGATGAAAACGATACCCTCTA
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protein sequence of jgi.p|Nanoce1779_2|575053

>mRNA_1023-protein ID=mRNA_1023-protein|Name=jgi.p|Nanoce1779_2|575053|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MTQANYNIIHSSSFIQLPTTVNQITQGKRTKKVGICGKYGTRYGASLRKI
IKKIEVSQHSKYTCVFCGKDNVKREVVGIWKCGSCNKSMAGGAYSLSTAA
AVQVRSTLARLRKAKAEGV*
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mRNA from alignment at scaffold_2:1034726..1035600-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1023 ID=mRNA_1023|Name=jgi.p|Nanoce1779_2|575053|organism=Nannochloropsis oceanica|type=mRNA|length=875bp|location=Sequence derived from alignment at scaffold_2:1034726..1035600- (Nannochloropsis oceanica)
AATGACGCGGACGACACGGTGATGGAGGTGTGTTGGGGCAGCACTGGCTC
CAGCACAGTAGCAGCCGCAACAGTGGCAGCGATCGTAGCGGTCGTAGCTG
TGGCTTCGGTGGCAACATTGGCAACGGAAGCCTCAGGCGTATTACGGCCG
GCCTTGCAAATGGGAGCATTTCTCCTCTCCTGGTTCAGCCTCTTGTTCTT
CTACCGAGCTTTCCATCTTGCGCGGTGCAGCTTTTATTGAAGTAGATTTC
AATCATGACACAAGCTAATTATAACATCATTCACTCATCTTCTTTTATCC
AACTACCCACAACCGTCAATCAAATAACACAGGGCAAGCGGACGAAGAAG
GTTGGGATTTGCGGGAAGTATGGCACACGCTATGGTGCCTCCCTCCGTAA
GATCATCAAGAAGATCGAAGTTTCCCAGCACTCCAAGTATACATGCGTTT
TCTGCGGGAAGGACAACGTGAAGCGAGAGGTGGTGGGCATCTGGAAGTGC
GGCTCGTGCAACAAGAGCATGGCGGGCGGGGCTTACTCCCTTTCTACTGC
TGCCGCTGTCCAAGTCCGCTCGACCCTGGCCCGCCTACGCAAGGCCAAGG
CTGAGGGCGTCTAAGCACCCTTTCTTAGTTTGTCGTCAGTGGAGTGATCA
GTCGAAGAAGGAGGAAAAGAGGGATCGGGGGAAAGCGAGGGCTTTGGACG
AAACAATGGTTGGCGTCGGTTTGAAACAAACCGTGACCGAATGGGTCGTC
GGCGCCTGCTTGGCATGAAAACTTATCACAAAGAAAGAATCACCCAGGCA
GACATAAATGAAAAATGGTAGAAAGAAAGGGCGAAATATTACAGTTCGTT
TTACCGATGAAAACGATACCCTCTA
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Coding sequence (CDS) from alignment at scaffold_2:1034726..1035600-

>mRNA_1023 ID=mRNA_1023|Name=jgi.p|Nanoce1779_2|575053|organism=Nannochloropsis oceanica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_2:1034726..1035600- (Nannochloropsis oceanica)
ATGACACAAGCTAATTATAACATCATTCACTCATCTTCTTTTATCCAACT
ACCCACAACCGTCAATCAAATAACACAGGGCAAGCGGACGAAGAAGGTTG
GGATTTGCGGGAAGTATGGCACACGCTATGGTGCCTCCCTCCGTAAGATC
ATCAAGAAGATCGAAGTTTCCCAGCACTCCAAGTATACATGCGTTTTCTG
CGGGAAGGACAACGTGAAGCGAGAGGTGGTGGGCATCTGGAAGTGCGGCT
CGTGCAACAAGAGCATGGCGGGCGGGGCTTACTCCCTTTCTACTGCTGCC
GCTGTCCAAGTCCGCTCGACCCTGGCCCGCCTACGCAAGGCCAAGGCTGA
GGGCGTCTAA
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Synonyms
Publications