jgi.p|Nanoce1779_2|667979, mRNA_1022 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|667979
Unique Name	mRNA_1022
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3429
Alignment location	scaffold_2:1031297..1034725 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	668065
Track	FilteredModels2
ProteinId	667979

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1031297..1034725 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667979	gene_1022	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667979	mRNA_1022-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1022	CDS_1022	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1031297..1034725+
coding sequence from alignment at scaffold_2:1031297..1034725+

mRNA sequence

>mRNA_1022 ID=mRNA_1022|Name=jgi.p|Nanoce1779_2|667979|organism=Nannochloropsis oceanica|type=mRNA|length=3429bp
GCCGTGCACCACCATCAAGACCCCCCTCCTCATTACTCCGTTTCGGCAAC
GCCCGTAAAGGCGAAGGTTTCGGGGTCAGAATCGACGAACCAGCCACACG
ACGACTGCTTCCCCTGCCATCTATCGTGCCTACCGATCCAGAATAGCTTG
CCCGCAACTGTGATGACGCTCCACCTCCGAACACACCTCCTCCTCCTCCT
CCTCCTCCTCCACTACCACCACCCGCCAGCTTAGCCGCCAAAATCTGCGC
TGCAGGCGTCAACGAGCCCAACCCTCGTTTCTTGCTGCTGCTGCTGCTAC
TGGTACTTCTACTACTACTGCTGCTGCTGCTGCTGGTAAGGAACGAGCTT
CTGCTCATTCCACCTCTTCTTCCTCCCGACGACGACGCATATACACTATC
AGCGCCGTTACCCATCCCACCACCACCCTCCCTCCGTCCCTCCCTCATCT
TCCCCCCTCTCGTCCTCGCCTTGGCCTCCAACTCCCCCGCCACCTTCTCC
CGAAACGTCGGACCCTGGATCTCAAATCTTTTCCTTTCCCCCTCCCTCCC
TCCTCCTCCTTCCCCACCACCACCACCATAATCAAACGGCTCACTGACCC
TCAGGGGCGTGCTTTCAATCTCTCCCCACGTCATTATCGGGACATCTCCA
CCCACCCCCGGGACCAGTAGAGGAGTCATGGGCACAAAACCTTCTGTAGC
CCGGGCTTGAGCACCTTGTGTACTGGTTGAGAATGAAGTTTCGGAAGACA
ATGTACTCAGTTCCGAGGCGAGTCGCTCTAGAGGCGAAGCACGTCCTGCA
GGTCCTCCAGTTCTCCCGCCTTTCCATTCCAGGGGCTTGGAGGCGGAGAA
ACGCGTGTTGCTGTGCACGAGTATTTTGGGGGCTTTGCCCTCGTGGCCCA
CCCGAGAATTATTTCCGGCTACTCCTGCTCCTGCCGTTAACATCCTCGTT
CCCTCTCTCCCATCCTGCTTGAGAAGTAGCAATTGTGGCTGTGTCGCGGC
ATTGGCGCCCCTCAGGTGCACCTTCGCATTCTCCTCTAAACTCCCGGGGT
AAAAAATGAAATTATTCTGAGGACGGCTTGGCCATGTCTCCGGGGCGTTG
GGCCTGTCATCTCCCAATCGTGGCTTGGCATTGGCAGCTGCGACGTGCTT
TCGATGTTGTTCCTCGGTCATCATTTCTCCACTCGGCAGGAGATACAGTT
TTTCTTTCCCTGCTTCCAGTTCGGGATGAGAATAAATCCACCAGTATTTG
CGACGGTGGGCTTCGCGCATTCGTTCCGCGAGCACGTCGAATGCCGCGTC
GTCTTCGCTTTGGAACTGAGCGAGGAATTGGTCCAGGGACAGGGGTAAGG
GCGAGGGGGAGGACTCGCCGCTGTTACTGGCAAGTACAGAGGTATCAGAC
CTTGGAGTATTATATCGCTGATCATTTCTAGTCACTGGAGTGGACGCCGC
CGATGAAAAGGAGGAGGAGTCTCCTCCCTCAAGGCCACCATCACCACCAT
CAGCAGCGAAGGTGTCACGTCGCATCTCCGATTGTACCACCCGCCGCACC
TCTGTCAAACTCCGCAAGCGACGGGCCTCCAATGCCTCCAGCCATTTTAT
CTGACGGTGCAACCGCGGCAGCCCTGGAAAGAAATCGCGCTCGATAATTT
CGCCCATAGCATCCACAAACGTGTCCTCGTCCAAGACTTGCGGCTGGGTC
TTGCGTCTGGTGCGGGATGGTGGGACAGCCGGCGGAAGCATCAAGGCATG
CTTCTCCTTTTTCCCCTTGTCGTTGCGGGAAGGCATGATGTGGTCCGCGC
ATGGATCCTCCATGCGCCGCAAGGGACTAGGCGTAGGCAGGCCGCGTTTG
TACGCCTGGGCGAGGGCCCTTGATCCTACGGGGGAAGGAGCTGGCGGAAG
ATGGTCATCCTTGCTGCCATTCCCCCCAGCCCCGTGCCCCCCCCGTGGCA
CCATCGACATGGTGTCCTCCTGTGCGATGGGTGTGGTGTATGGTTGGGAG
GGTCAGAAGGTATGTATTGCGGATGCAGTGTCGCCCGTTTTGCGGGGGCA
GCGATCATGACGACAGATTATGTGACGAAAGCGACCCTTTGCTACGCGTT
GGTTGTCTATTTATTACTTGACTCAAGCAGAAACACTCACACCCCTTCCA
AATACCACGTCCACTACCATCAGAGGCATATTCTGCTTGCCGTGGACAGC
CGTCCCCTTCTCAGCTGTAGCGGGCAACACAAGGCGTCGACGCAAATATG
GGCAGGATCGGTGTGCCTGCTTTGCACTAGCAAGTCCCTTTGGAAGCCCG
AGGCGCAAGCATTGCTGCCGGCCACACGTCTGTGCTGCGTCAATACGTCG
TGGACCAGGTCTCCCAAAACCACACGCGGGCCAACTGATCCCGACTCACA
AGCCCGCGGGACACGCTGCCCTCGACCCCAAGTCCTCGTTTGAATCTCTC
CTGATTCCCAACTTTCCCTACGGTGTTCCCAAAAGATGGTCCTGGTCGCC
TCTCTCCTCTACCTCGCCCGTGCGCGCATTGCCCTCTCTACAATCTTCGC
CTTGACGTACCTGCTCTTCCCCCGCTTCGCTTCCTGGCAGATCGATTCCT
TGCGCTACGCAAGCATGAGCATTTCGCCCTTGGACTGGGCTATATCTCTA
GAAATGGACGTGGGGGTCTCTGTGTTCAATCCTAACCATGTTCCCGCCCG
GTTGCACAATGCTACCCTGGATATATATCGCGTTCGGCCCACTTACATCA
GTGGCATGCACCAAGCCCCCACGTACGGCAGAAAATTTGGCGTGGCCACC
GCTTCGGCACATGATATCCCGCGACGAGATTCCTTTCCATTGGACAGTCA
TATCTCCATTGTGCGCCTTCCTTTTTCAGTAGCCTGCTCTTTTCTCCGGG
AGATGGCCACGAACGAAGGATTAATCAAAGTGAGGGGTGTAGGACAGGCA
TTGGTCTCAGCAGCAGCGCAAGATGTGACAGTGTTTGTCGACTGCTTGCA
GCATGTTAAACCCTTTCCACACCCGGGCAGAATAGTGCACACGGCGTGTA
CTTACACTATTGCGAATGGTGGGGGTGCGAATGGCGCGCTGTTGGATTTG
CTTCAGTTGCAGTTGGGACCAGGGTGGGGGAAGACGAGGAGGGGGACGAG
ACATGAGGGGCAGGACCAGCAGCACGTTTTGGGTAGTGGGAGCAACAGTA
GTAGTGGGAAAGGAGGGGGGATAGAAGGAGAGATGATGCTCAAGGCGGTG
GTGGCCGCGGCACAAGCAAGCGAAGGGCTTTGAGTCAATCATAGAAGTTG
TGAATAGCTTTACATTTTGAAACACAGCGAACAACAACTGGGGTTAAGAG
GAAGGTGAAAGAGTAGCTGGTGGATATTGGGCACTTTCTGTACAGCGGCA
AAACATTTATAGTAGGCTTGCATGTTCCC

protein sequence of jgi.p|Nanoce1779_2|667979

>mRNA_1022-protein ID=mRNA_1022-protein|Name=jgi.p|Nanoce1779_2|667979|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MVLVASLLYLARARIALSTIFALTYLLFPRFASWQIDSLRYASMSISPLD
WAISLEMDVGVSVFNPNHVPARLHNATLDIYRVRPTYISGMHQAPTYGRK
FGVATASAHDIPRRDSFPLDSHISIVRLPFSVACSFLREMATNEGLIKVR
GVGQALVSAAAQDVTVFVDCLQHVKPFPHPGRIVHTACTYTIANGGGANG
ALLDLLQLQLGPGWGKTRRGTRHEGQDQQHVLGSGSNSSSGKGGGIEGEM
MLKAVVAAAQASEGL*

mRNA from alignment at scaffold_2:1031297..1034725+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1022 ID=mRNA_1022|Name=jgi.p|Nanoce1779_2|667979|organism=Nannochloropsis oceanica|type=mRNA|length=3429bp|location=Sequence derived from alignment at scaffold_2:1031297..1034725+ (Nannochloropsis oceanica)
GCCGTGCACCACCATCAAGACCCCCCTCCTCATTACTCCGTTTCGGCAAC
GCCCGTAAAGGCGAAGGTTTCGGGGTCAGAATCGACGAACCAGCCACACG
ACGACTGCTTCCCCTGCCATCTATCGTGCCTACCGATCCAGAATAGCTTG
CCCGCAACTGTGATGACGCTCCACCTCCGAACACACCTCCTCCTCCTCCT
CCTCCTCCTCCACTACCACCACCCGCCAGCTTAGCCGCCAAAATCTGCGC
TGCAGGCGTCAACGAGCCCAACCCTCGTTTCTTGCTGCTGCTGCTGCTAC
TGGTACTTCTACTACTACTGCTGCTGCTGCTGCTGGTAAGGAACGAGCTT
CTGCTCATTCCACCTCTTCTTCCTCCCGACGACGACGCATATACACTATC
AGCGCCGTTACCCATCCCACCACCACCCTCCCTCCGTCCCTCCCTCATCT
TCCCCCCTCTCGTCCTCGCCTTGGCCTCCAACTCCCCCGCCACCTTCTCC
CGAAACGTCGGACCCTGGATCTCAAATCTTTTCCTTTCCCCCTCCCTCCC
TCCTCCTCCTTCCCCACCACCACCACCATAATCAAACGGCTCACTGACCC
TCAGGGGCGTGCTTTCAATCTCTCCCCACGTCATTATCGGGACATCTCCA
CCCACCCCCGGGACCAGTAGAGGAGTCATGGGCACAAAACCTTCTGTAGC
CCGGGCTTGAGCACCTTGTGTACTGGTTGAGAATGAAGTTTCGGAAGACA
ATGTACTCAGTTCCGAGGCGAGTCGCTCTAGAGGCGAAGCACGTCCTGCA
GGTCCTCCAGTTCTCCCGCCTTTCCATTCCAGGGGCTTGGAGGCGGAGAA
ACGCGTGTTGCTGTGCACGAGTATTTTGGGGGCTTTGCCCTCGTGGCCCA
CCCGAGAATTATTTCCGGCTACTCCTGCTCCTGCCGTTAACATCCTCGTT
CCCTCTCTCCCATCCTGCTTGAGAAGTAGCAATTGTGGCTGTGTCGCGGC
ATTGGCGCCCCTCAGGTGCACCTTCGCATTCTCCTCTAAACTCCCGGGGT
AAAAAATGAAATTATTCTGAGGACGGCTTGGCCATGTCTCCGGGGCGTTG
GGCCTGTCATCTCCCAATCGTGGCTTGGCATTGGCAGCTGCGACGTGCTT
TCGATGTTGTTCCTCGGTCATCATTTCTCCACTCGGCAGGAGATACAGTT
TTTCTTTCCCTGCTTCCAGTTCGGGATGAGAATAAATCCACCAGTATTTG
CGACGGTGGGCTTCGCGCATTCGTTCCGCGAGCACGTCGAATGCCGCGTC
GTCTTCGCTTTGGAACTGAGCGAGGAATTGGTCCAGGGACAGGGGTAAGG
GCGAGGGGGAGGACTCGCCGCTGTTACTGGCAAGTACAGAGGTATCAGAC
CTTGGAGTATTATATCGCTGATCATTTCTAGTCACTGGAGTGGACGCCGC
CGATGAAAAGGAGGAGGAGTCTCCTCCCTCAAGGCCACCATCACCACCAT
CAGCAGCGAAGGTGTCACGTCGCATCTCCGATTGTACCACCCGCCGCACC
TCTGTCAAACTCCGCAAGCGACGGGCCTCCAATGCCTCCAGCCATTTTAT
CTGACGGTGCAACCGCGGCAGCCCTGGAAAGAAATCGCGCTCGATAATTT
CGCCCATAGCATCCACAAACGTGTCCTCGTCCAAGACTTGCGGCTGGGTC
TTGCGTCTGGTGCGGGATGGTGGGACAGCCGGCGGAAGCATCAAGGCATG
CTTCTCCTTTTTCCCCTTGTCGTTGCGGGAAGGCATGATGTGGTCCGCGC
ATGGATCCTCCATGCGCCGCAAGGGACTAGGCGTAGGCAGGCCGCGTTTG
TACGCCTGGGCGAGGGCCCTTGATCCTACGGGGGAAGGAGCTGGCGGAAG
ATGGTCATCCTTGCTGCCATTCCCCCCAGCCCCGTGCCCCCCCCGTGGCA
CCATCGACATGGTGTCCTCCTGTGCGATGGGTGTGGTGTATGGTTGGGAG
GGTCAGAAGGTATGTATTGCGGATGCAGTGTCGCCCGTTTTGCGGGGGCA
GCGATCATGACGACAGATTATGTGACGAAAGCGACCCTTTGCTACGCGTT
GGTTGTCTATTTATTACTTGACTCAAGCAGAAACACTCACACCCCTTCCA
AATACCACGTCCACTACCATCAGAGGCATATTCTGCTTGCCGTGGACAGC
CGTCCCCTTCTCAGCTGTAGCGGGCAACACAAGGCGTCGACGCAAATATG
GGCAGGATCGGTGTGCCTGCTTTGCACTAGCAAGTCCCTTTGGAAGCCCG
AGGCGCAAGCATTGCTGCCGGCCACACGTCTGTGCTGCGTCAATACGTCG
TGGACCAGGTCTCCCAAAACCACACGCGGGCCAACTGATCCCGACTCACA
AGCCCGCGGGACACGCTGCCCTCGACCCCAAGTCCTCGTTTGAATCTCTC
CTGATTCCCAACTTTCCCTACGGTGTTCCCAAAAGATGGTCCTGGTCGCC
TCTCTCCTCTACCTCGCCCGTGCGCGCATTGCCCTCTCTACAATCTTCGC
CTTGACGTACCTGCTCTTCCCCCGCTTCGCTTCCTGGCAGATCGATTCCT
TGCGCTACGCAAGCATGAGCATTTCGCCCTTGGACTGGGCTATATCTCTA
GAAATGGACGTGGGGGTCTCTGTGTTCAATCCTAACCATGTTCCCGCCCG
GTTGCACAATGCTACCCTGGATATATATCGCGTTCGGCCCACTTACATCA
GTGGCATGCACCAAGCCCCCACGTACGGCAGAAAATTTGGCGTGGCCACC
GCTTCGGCACATGATATCCCGCGACGAGATTCCTTTCCATTGGACAGTCA
TATCTCCATTGTGCGCCTTCCTTTTTCAGTAGCCTGCTCTTTTCTCCGGG
AGATGGCCACGAACGAAGGATTAATCAAAGTGAGGGGTGTAGGACAGGCA
TTGGTCTCAGCAGCAGCGCAAGATGTGACAGTGTTTGTCGACTGCTTGCA
GCATGTTAAACCCTTTCCACACCCGGGCAGAATAGTGCACACGGCGTGTA
CTTACACTATTGCGAATGGTGGGGGTGCGAATGGCGCGCTGTTGGATTTG
CTTCAGTTGCAGTTGGGACCAGGGTGGGGGAAGACGAGGAGGGGGACGAG
ACATGAGGGGCAGGACCAGCAGCACGTTTTGGGTAGTGGGAGCAACAGTA
GTAGTGGGAAAGGAGGGGGGATAGAAGGAGAGATGATGCTCAAGGCGGTG
GTGGCCGCGGCACAAGCAAGCGAAGGGCTTTGAGTCAATCATAGAAGTTG
TGAATAGCTTTACATTTTGAAACACAGCGAACAACAACTGGGGTTAAGAG
GAAGGTGAAAGAGTAGCTGGTGGATATTGGGCACTTTCTGTACAGCGGCA
AAACATTTATAGTAGGCTTGCATGTTCCC

Coding sequence (CDS) from alignment at scaffold_2:1031297..1034725+

>mRNA_1022 ID=mRNA_1022|Name=jgi.p|Nanoce1779_2|667979|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_2:1031297..1034725+ (Nannochloropsis oceanica)
ATGGTCCTGGTCGCCTCTCTCCTCTACCTCGCCCGTGCGCGCATTGCCCT
CTCTACAATCTTCGCCTTGACGTACCTGCTCTTCCCCCGCTTCGCTTCCT
GGCAGATCGATTCCTTGCGCTACGCAAGCATGAGCATTTCGCCCTTGGAC
TGGGCTATATCTCTAGAAATGGACGTGGGGGTCTCTGTGTTCAATCCTAA
CCATGTTCCCGCCCGGTTGCACAATGCTACCCTGGATATATATCGCGTTC
GGCCCACTTACATCAGTGGCATGCACCAAGCCCCCACGTACGGCAGAAAA
TTTGGCGTGGCCACCGCTTCGGCACATGATATCCCGCGACGAGATTCCTT
TCCATTGGACAGTCATATCTCCATTGTGCGCCTTCCTTTTTCAGTAGCCT
GCTCTTTTCTCCGGGAGATGGCCACGAACGAAGGATTAATCAAAGTGAGG
GGTGTAGGACAGGCATTGGTCTCAGCAGCAGCGCAAGATGTGACAGTGTT
TGTCGACTGCTTGCAGCATGTTAAACCCTTTCCACACCCGGGCAGAATAG
TGCACACGGCGTGTACTTACACTATTGCGAATGGTGGGGGTGCGAATGGC
GCGCTGTTGGATTTGCTTCAGTTGCAGTTGGGACCAGGGTGGGGGAAGAC
GAGGAGGGGGACGAGACATGAGGGGCAGGACCAGCAGCACGTTTTGGGTA
GTGGGAGCAACAGTAGTAGTGGGAAAGGAGGGGGGATAGAAGGAGAGATG
ATGCTCAAGGCGGTGGTGGCCGCGGCACAAGCAAGCGAAGGGCTTTGA

Synonyms

Publications