jgi.p|Nanoce1779_2|149097, mRNA_1021 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|149097
Unique Name	mRNA_1021
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2226
Alignment location	scaffold_2:1031037..1033518 -

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Properties


Property Name	Value
TranscriptId	149183
Track	FilteredModels2
ProteinId	149097

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1031037..1033518 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|149097	gene_1021	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|149097	mRNA_1021-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1021	CDS_1021	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1031037..1033518-
coding sequence from alignment at scaffold_2:1031037..1033518-

mRNA sequence

>mRNA_1021 ID=mRNA_1021|Name=jgi.p|Nanoce1779_2|149097|organism=Nannochloropsis oceanica|type=mRNA|length=2226bp
CGCTACAGCTGAGAAGGGGACGGCTGTCCACGGCAAGCAGAATATGCCTC
TGATGGTAGTGGACGTGGTATTTGGAAGGGGTGTGAGTGTTTCTGCTTGA
GTCAAGTAATAAATAGACAACCAACGCGTAGCAAAGGGTCGCTTTCGTCA
CATAATCTGTCGTCATGATCGCTGCCCCCGCAAAACGGGCGACACTGCAT
CCGCAATACATACCTTCTGACCCTCCCAACCATACACCACACCCATCGCA
CAGGAGGACACCATGTCGATGGTGCCACGGGGGGGGCACGGGGCTGGGGG
GAATGGCAGCAAGGATGACCATCTTCCGCCAGCTCCTTCCCCCGTAGGAT
CAAGGGCCCTCGCCCAGGCGTACAAACGCGGCCTGCCTACGCCTAGTCCC
TTGCGGCGCATGGAGGATCCATGCGCGGACCACATCATGCCTTCCCGCAA
CGACAAGGGGAAAAAGGAGAAGCATGCCTTGATGCTTCCGCCGGCTGTCC
CACCATCCCGCACCAGACGCAAGACCCAGCCGCAAGTCTTGGACGAGGAC
ACGTTTGTGGATGCTATGGGCGAAATTATCGAGCGCGATTTCTTTCCAGG
GCTGCCGCGGTTGCACCGTCAGATAAAATGGCTGGAGGCATTGGAGGCCC
GTCGCTTGCGGAGTTTGACAGAGGTGCGGCGGGTGGTACAATCGGAGATG
CGACGTGACACCTTCGCTGCTGATGGTGGTGATGGTGGCCTTGAGGGAGG
AGACTCCTCCTCCTTTTCATCGGCGGCGTCCACTCCAGTGACTAGAAATG
ATCAGCGATATAATACTCCAAGGTCTGATACCTCTGTACTTGCCAGTAAC
AGCGGCGAGTCCTCCCCCTCGCCCTTACCCCTGTCCCTGGACCAATTCCT
CGCTCAGTTCCAAAGCGAAGACGACGCGGCATTCGACGTGCTCGCGGAAC
GAATGCGCGAAGCCCACCGTCGCAAATACTGGTGGATTTATTCTCATCCC
GAACTGGAAGCAGGGAAAGAAAAACTGTATCTCCTGCCGAGTGGAGAAAT
GATGACCGAGGAACAACATCGAAAGCACGTCGCAGCTGCCAATGCCAAGC
CACGATTGGGAGATGACAGGCCCAACGCCCCGGAGACATGGCCAAGCCGT
CCTCAGAATAATTTCATTTTTTACCCCGGGAGTTTAGAGGAGAATGCGAA
GGTGCACCTGAGGGGCGCCAATGCCGCGACACAGCCACAATTGCTACTTC
TCAAGCAGGATGGGAGAGAGGGAACGAGGATGTTAACGGCAGGAGCAGGA
GTAGCCGGAAATAATTCTCGGGTGGGCCACGAGGGCAAAGCCCCCAAAAT
ACTCGTGCACAGCAACACGCGTTTCTCCGCCTCCAAGCCCCTGGAATGGA
AAGGCGGGAGAACTGGAGGACCTGCAGGACGTGCTTCGCCTCTAGAGCGA
CTCGCCTCGGAACTGAGTACATTGTCTTCCGAAACTTCATTCTCAACCAG
TACACAAGGTGCTCAAGCCCGGGCTACAGAAGGTTTTGTGCCCATGACTC
CTCTACTGGTCCCGGGGGTGGGTGGAGATGTCCCGATAATGACGTGGGGA
GAGATTGAAAGCACGCCCCTGAGGGTCAGTGAGCCGTTTGATTATGGTGG
TGGTGGTGGGGAAGGAGGAGGAGGGAGGGAGGGGGAAAGGAAAAGATTTG
AGATCCAGGGTCCGACGTTTCGGGAGAAGGTGGCGGGGGAGTTGGAGGCC
AAGGCGAGGACGAGAGGGGGGAAGATGAGGGAGGGACGGAGGGAGGGTGG
TGGTGGGATGGGTAACGGCGCTGATAGTGTATATGCGTCGTCGTCGGGAG
GAAGAAGAGGTGGAATGAGCAGAAGCTCGTTCCTTACCAGCAGCAGCAGC
AGCAGTAGTAGTAGAAGTACCAGTAGCAGCAGCAGCAGCAAGAAACGAGG
GTTGGGCTCGTTGACGCCTGCAGCGCAGATTTTGGCGGCTAAGCTGGCGG
GTGGTGGTAGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGGGGAGGA
GGAGACATGGGTGGTACTTCTGCAGGTGCTGTGGATGGAAAGAGCTATGG
CAGGAGCAAGGTGACGGAGAATTTACTCAATTTTTAGTCGGATGAGGCAG
GCGGGTACCTTTGTGCCATAGGGCGAGGAAGTGGTGTTGAGCGAGTAAAG
GTTTCAGTACACTCAAGAAGCTGATA

protein sequence of jgi.p|Nanoce1779_2|149097

>mRNA_1021-protein ID=mRNA_1021-protein|Name=jgi.p|Nanoce1779_2|149097|organism=Nannochloropsis oceanica|type=polypeptide|length=625bp
MSMVPRGGHGAGGNGSKDDHLPPAPSPVGSRALAQAYKRGLPTPSPLRRM
EDPCADHIMPSRNDKGKKEKHALMLPPAVPPSRTRRKTQPQVLDEDTFVD
AMGEIIERDFFPGLPRLHRQIKWLEALEARRLRSLTEVRRVVQSEMRRDT
FAADGGDGGLEGGDSSSFSSAASTPVTRNDQRYNTPRSDTSVLASNSGES
SPSPLPLSLDQFLAQFQSEDDAAFDVLAERMREAHRRKYWWIYSHPELEA
GKEKLYLLPSGEMMTEEQHRKHVAAANAKPRLGDDRPNAPETWPSRPQNN
FIFYPGSLEENAKVHLRGANAATQPQLLLLKQDGREGTRMLTAGAGVAGN
NSRVGHEGKAPKILVHSNTRFSASKPLEWKGGRTGGPAGRASPLERLASE
LSTLSSETSFSTSTQGAQARATEGFVPMTPLLVPGVGGDVPIMTWGEIES
TPLRVSEPFDYGGGGGEGGGGREGERKRFEIQGPTFREKVAGELEAKART
RGGKMREGRREGGGGMGNGADSVYASSSGGRRGGMSRSSFLTSSSSSSSS
RSTSSSSSSKKRGLGSLTPAAQILAAKLAGGGSGGGGGGGGGGGGGGDMG
GTSAGAVDGKSYGRSKVTENLLNF*

mRNA from alignment at scaffold_2:1031037..1033518-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1021 ID=mRNA_1021|Name=jgi.p|Nanoce1779_2|149097|organism=Nannochloropsis oceanica|type=mRNA|length=2482bp|location=Sequence derived from alignment at scaffold_2:1031037..1033518- (Nannochloropsis oceanica)
CGCTACAGCTGAGAAGGGGACGGCTGTCCACGGCAAGCAGAATATGCCTC
TGATGGTAGTGGACGTGGTATTTGGAAGGGGTGTGAGTGTTTCTGCTTGA
GTCAAGTAATAAATAGACAACCAACGCGTAGCAAAGGGTCGCTTTCGTCA
CATAATCTGTCGTCATGATCGCTGCCCCCGCAAAACGGGCGACACTGCAT
CCGCAATACATACCTTCTGACCCTCCCAACCATACACCACACCCATCGCA
CAGGAGGACACCATGTCGATGGTGCCACGGGGGGGGCACGGGGCTGGGGG
GAATGGCAGCAAGGATGACCATCTTCCGCCAGCTCCTTCCCCCGTAGGAT
CAAGGGCCCTCGCCCAGGCGTACAAACGCGGCCTGCCTACGCCTAGTCCC
TTGCGGCGCATGGAGGATCCATGCGCGGACCACATCATGCCTTCCCGCAA
CGACAAGGGGAAAAAGGAGAAGCATGCCTTGATGCTTCCGCCGGCTGTCC
CACCATCCCGCACCAGACGCAAGACCCAGCCGCAAGTCTTGGACGAGGAC
ACGTTTGTGGATGCTATGGGCGAAATTATCGAGCGCGATTTCTTTCCAGG
GCTGCCGCGGTTGCACCGTCAGATAAAATGGCTGGAGGCATTGGAGGCCC
GTCGCTTGCGGAGTTTGACAGAGGTGCGGCGGGTGGTACAATCGGAGATG
CGACGTGACACCTTCGCTGCTGATGGTGGTGATGGTGGCCTTGAGGGAGG
AGACTCCTCCTCCTTTTCATCGGCGGCGTCCACTCCAGTGACTAGAAATG
ATCAGCGATATAATACTCCAAGGTCTGATACCTCTGTACTTGCCAGTAAC
AGCGGCGAGTCCTCCCCCTCGCCCTTACCCCTGTCCCTGGACCAATTCCT
CGCTCAGTTCCAAAGCGAAGACGACGCGGCATTCGACGTGCTCGCGGAAC
GAATGCGCGAAGCCCACCGTCGCAAATACTGGTGGATTTATTCTCATCCC
GAACTGGAAGCAGGGAAAGAAAAACTGTATCTCCTGCCGAGTGGAGAAAT
GATGACCGAGGAACAACATCGAAAGCACGTCGCAGCTGCCAATGCCAAGC
CACGATTGGGAGATGACAGGCCCAACGCCCCGGAGACATGGCCAAGCCGT
CCTCAGAATAATTTCATTTTTTACCCCGGGAGTTTAGAGGAGAATGCGAA
GGTGCACCTGAGGGGCGCCAATGCCGCGACACAGCCACAATTGCTACTTC
TCAAGCAGGATGGGAGAGAGGGAACGAGGATGTTAACGGCAGGAGCAGGA
GTAGCCGGAAATAATTCTCGGGTGGGCCACGAGGGCAAAGCCCCCAAAAT
ACTCGTGCACAGCAACACGCGTTTCTCCGCCTCCAAGCCCCTGGAATGGA
AAGGCGGGAGAACTGGAGGACCTGCAGGACGTGCTTCGCCTCTAGAGCGA
CTCGCCTCGGAACTGAGTACATTGTCTTCCGAAACTTCATTCTCAACCAG
TACACAAGGTGCTCAAGCCCGGGCTACAGAAGGTTTTGTGCCCATGACTC
CTCTACTGGTCCCGGGGGTGGGTGGAGATGTCCCGATAATGACGTGGGGA
GAGATTGAAAGCACGCCCCTGAGGGTCAGTGAGCCGTTTGATTATGGTGG
TGGTGGTGGGGAAGGAGGAGGAGGGAGGGAGGGGGAAAGGAAAAGATTTG
AGATCCAGGGTCCGACGTTTCGGGAGAAGGTGGCGGGGGAGTTGGAGGCC
AAGGCGAGGACGAGAGGGGGGAAGATGAGGGAGGGACGGAGGGAGGGTGG
TGGTGGGATGGGTAACGGCGCTGATAGTGTATATGCGTCGTCGTCGGGAG
GAAGAAGAGGTGGAATGAGCAGAAGCTCGTTCCTTACCAGCAGCAGCAGC
AGCAGTAGTAGTAGAAGTACCAGTAGCAGCAGCAGCAGCAAGAAACGAGG
GTTGGGCTCGTTGACGCCTGCAGCGCAGATTTTGGCGGCTAAGCTGGCGG
GTGGTGGTAGTGGAGGAGGAGGAGGAGGAGGAGGAGGTGTGTTCGGAGGT
GGAGCGTCATCACAGTTGCGGGCAAGCTATTCTGGATCGGTAGGCACGAT
AGATGGCAGGGGAAGCAGTCGTCGTGTGGCTGGTTCGTCGATTCTGACCC
CGAAACCTTCGCCTTTACGGGCGTTGCCGAAACGGAGTAATGAGGAGGGG
GGTCTTGATGGTGGTGCACGGCAAGGGGGGGGGGGGGGGGAGTGGTAGTA
GTGGTCAAGGTAGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGGGGG
GGAGGAGGAGACATGGGTGGTACTTCTGCAGGTGCTGTGGATGGAAAGAG
CTATGGCAGGAGCAAGGTGACGGAGAATTTACTCAATTTTTAGTCGGATG
AGGCAGGCGGGTACCTTTGTGCCATAGGGCGAGGAAGTGGTGTTGAGCGA
GTAAAGGTTTCAGTACACTCAAGAAGCTGATA

Coding sequence (CDS) from alignment at scaffold_2:1031037..1033518-

>mRNA_1021 ID=mRNA_1021|Name=jgi.p|Nanoce1779_2|149097|organism=Nannochloropsis oceanica|type=CDS|length=3750bp|location=Sequence derived from alignment at scaffold_2:1031037..1033518- (Nannochloropsis oceanica)
GAGGGGGGGGAGGAGGAGACATGGGTGGTACTTCTGCAGGTGCTGTGGAT
GGAAAGAGCTATGGCAGGAGCAAGGTGACGGAGAATTTACTCAATTTTTA
GATGTCGATGGTGCCACGGGGGGGGCACGGGGCTGGGGGGAATGGCAGCA
AGGATGACCATCTTCCGCCAGCTCCTTCCCCCGTAGGATCAAGGGCCCTC
GCCCAGGCGTACAAACGCGGCCTGCCTACGCCTAGTCCCTTGCGGCGCAT
GGAGGATCCATGCGCGGACCACATCATGCCTTCCCGCAACGACAAGGGGA
AAAAGGAGAAGCATGCCTTGATGCTTCCGCCGGCTGTCCCACCATCCCGC
ACCAGACGCAAGACCCAGCCGCAAGTCTTGGACGAGGACACGTTTGTGGA
TGCTATGGGCGAAATTATCGAGCGCGATTTCTTTCCAGGGCTGCCGCGGT
TGCACCGTCAGATAAAATGGCTGGAGGCATTGGAGGCCCGTCGCTTGCGG
AGTTTGACAGAGGTGCGGCGGGTGGTACAATCGGAGATGCGACGTGACAC
CTTCGCTGCTGATGGTGGTGATGGTGGCCTTGAGGGAGGAGACTCCTCCT
CCTTTTCATCGGCGGCGTCCACTCCAGTGACTAGAAATGATCAGCGATAT
AATACTCCAAGGTCTGATACCTCTGTACTTGCCAGTAACAGCGGCGAGTC
CTCCCCCTCGCCCTTACCCCTGTCCCTGGACCAATTCCTCGCTCAGTTCC
AAAGCGAAGACGACGCGGCATTCGACGTGCTCGCGGAACGAATGCGCGAA
GCCCACCGTCGCAAATACTGGTGGATTTATTCTCATCCCGAACTGGAAGC
AGGGAAAGAAAAACTGTATCTCCTGCCGAGTGGAGAAATGATGACCGAGG
AACAACATCGAAAGCACGTCGCAGCTGCCAATGCCAAGCCACGATTGGGA
GATGACAGGCCCAACGCCCCGGAGACATGGCCAAGCCGTCCTCAGAATAA
TTTCATTTTTTACCCCGGGAGTTTAGAGGAGAATGCGAAGGTGCACCTGA
GGGGCGCCAATGCCGCGACACAGCCACAATTGCTACTTCTCAAGCAGGAT
GGGAGAGAGGGAACGAGGATGTTAACGGCAGGAGCAGGAGTAGCCGGAAA
TAATTCTCGGGTGGGCCACGAGGGCAAAGCCCCCAAAATACTCGTGCACA
GCAACACGCGTTTCTCCGCCTCCAAGCCCCTGGAATGGAAAGGCGGGAGA
ACTGGAGGACCTGCAGGACGTGCTTCGCCTCTAGAGCGACTCGCCTCGGA
ACTGAGTACATTGTCTTCCGAAACTTCATTCTCAACCAGTACACAAGGTG
CTCAAGCCCGGGCTACAGAAGGTTTTGTGCCCATGACTCCTCTACTGGTC
CCGGGGGTGGGTGGAGATGTCCCGATAATGACGTGGGGAGAGATTGAAAG
CACGCCCCTGAGGGTCAGTGAGCCGTTTGATTATGGTGGTGGTGGTGGGG
AAGGAGGAGGAGGGAGGGAGGGGGAAAGGAAAAGATTTGAGATCCAGGGT
CCGACGTTTCGGGAGAAGGTGGCGGGGGAGTTGGAGGCCAAGGCGAGGAC
GAGAGGGGGGAAGATGAGGGAGGGACGGAGGGAGGGTGGTGGTGGGATGG
GTAACGGCGCTGATAGTGTATATGCGTCGTCGTCGGGAGGAAGAAGAGGT
GGAATGAGCAGAAGCTCGTTCCTTACCAGCAGCAGCAGCAGCAGTAGTAG
TAGAAGTACCAGTAGCAGCAGCAGCAGCAAGAAACGAGGGTTGGGCTCGT
TGACGCCTGCAGCGCAGATTTTGGCGGCTAAGCTGGCGGGTGGTGGTAGT
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGGGGAGGAGGAGACATGGG
TGGTACTTCTGCAGGTGCTGTGGATGGAAAGAGCTATGGCAGGAGCAAGG
TGACGGAGAATTTACTCAATTTTTAGATGTCGATGGTGCCACGGGGGGGG
CACGGGGCTGGGGGGAATGGCAGCAAGGATGACCATCTTCCGCCAGCTCC
TTCCCCCGTAGGATCAAGGGCCCTCGCCCAGGCGTACAAACGCGGCCTGC
CTACGCCTAGTCCCTTGCGGCGCATGGAGGATCCATGCGCGGACCACATC
ATGCCTTCCCGCAACGACAAGGGGAAAAAGGAGAAGCATGCCTTGATGCT
TCCGCCGGCTGTCCCACCATCCCGCACCAGACGCAAGACCCAGCCGCAAG
TCTTGGACGAGGACACGTTTGTGGATGCTATGGGCGAAATTATCGAGCGC
GATTTCTTTCCAGGGCTGCCGCGGTTGCACCGTCAGATAAAATGGCTGGA
GGCATTGGAGGCCCGTCGCTTGCGGAGTTTGACAGAGGTGCGGCGGGTGG
TACAATCGGAGATGCGACGTGACACCTTCGCTGCTGATGGTGGTGATGGT
GGCCTTGAGGGAGGAGACTCCTCCTCCTTTTCATCGGCGGCGTCCACTCC
AGTGACTAGAAATGATCAGCGATATAATACTCCAAGGTCTGATACCTCTG
TACTTGCCAGTAACAGCGGCGAGTCCTCCCCCTCGCCCTTACCCCTGTCC
CTGGACCAATTCCTCGCTCAGTTCCAAAGCGAAGACGACGCGGCATTCGA
CGTGCTCGCGGAACGAATGCGCGAAGCCCACCGTCGCAAATACTGGTGGA
TTTATTCTCATCCCGAACTGGAAGCAGGGAAAGAAAAACTGTATCTCCTG
CCGAGTGGAGAAATGATGACCGAGGAACAACATCGAAAGCACGTCGCAGC
TGCCAATGCCAAGCCACGATTGGGAGATGACAGGCCCAACGCCCCGGAGA
CATGGCCAAGCCGTCCTCAGAATAATTTCATTTTTTACCCCGGGAGTTTA
GAGGAGAATGCGAAGGTGCACCTGAGGGGCGCCAATGCCGCGACACAGCC
ACAATTGCTACTTCTCAAGCAGGATGGGAGAGAGGGAACGAGGATGTTAA
CGGCAGGAGCAGGAGTAGCCGGAAATAATTCTCGGGTGGGCCACGAGGGC
AAAGCCCCCAAAATACTCGTGCACAGCAACACGCGTTTCTCCGCCTCCAA
GCCCCTGGAATGGAAAGGCGGGAGAACTGGAGGACCTGCAGGACGTGCTT
CGCCTCTAGAGCGACTCGCCTCGGAACTGAGTACATTGTCTTCCGAAACT
TCATTCTCAACCAGTACACAAGGTGCTCAAGCCCGGGCTACAGAAGGTTT
TGTGCCCATGACTCCTCTACTGGTCCCGGGGGTGGGTGGAGATGTCCCGA
TAATGACGTGGGGAGAGATTGAAAGCACGCCCCTGAGGGTCAGTGAGCCG
TTTGATTATGGTGGTGGTGGTGGGGAAGGAGGAGGAGGGAGGGAGGGGGA
AAGGAAAAGATTTGAGATCCAGGGTCCGACGTTTCGGGAGAAGGTGGCGG
GGGAGTTGGAGGCCAAGGCGAGGACGAGAGGGGGGAAGATGAGGGAGGGA
CGGAGGGAGGGTGGTGGTGGGATGGGTAACGGCGCTGATAGTGTATATGC
GTCGTCGTCGGGAGGAAGAAGAGGTGGAATGAGCAGAAGCTCGTTCCTTA
CCAGCAGCAGCAGCAGCAGTAGTAGTAGAAGTACCAGTAGCAGCAGCAGC
AGCAAGAAACGAGGGTTGGGCTCGTTGACGCCTGCAGCGCAGATTTTGGC
GGCTAAGCTGGCGGGTGGTGGTAGTGGAGGAGGAGGAGGAGGAGGAGGAG

Synonyms

Publications