jgi.p|Nanoce1779_2|610200, mRNA_10204 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610200
Unique NamemRNA_10204
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length316
Alignment locationscaffold_48:149798..150113 -

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Properties
Property NameValue
TranscriptId610286
TrackFilteredModels2
ProteinId610200
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:149798..150113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610200gene_10204Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610200mRNA_10204-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10204CDS_10204Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10204 ID=mRNA_10204|Name=jgi.p|Nanoce1779_2|610200|organism=Nannochloropsis oceanica|type=mRNA|length=316bp
CCCCCAAAGAGAGGGCACTGCAAGCCCTCCAGCGAGAAAACGCCCCAGAT
GATGGTGCCACCGCTGCTGCTGCTGCTGCTGCTGGGACAAATGCTGAGAC
AGATGCTGATGCGCGGGCAGCCGTTGGACAGGCATGAGAGAAAGAACGAG
GAGGAGGACGGCGAGGAGGAGGACGACGACGAGAAGGACGAAGGCGAGGA
AGAGGGGGGGCAGTCAATCTACACTTCCACCTATCAGAGGGGAAACAAAT
GTCAAGTTCAAAGCAATTAAATCAAAAGCAAAATGAAAATATAGCAATCA
AGGCACATGTAGTGGG
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protein sequence of jgi.p|Nanoce1779_2|610200

>mRNA_10204-protein ID=mRNA_10204-protein|Name=jgi.p|Nanoce1779_2|610200|organism=Nannochloropsis oceanica|type=polypeptide|length=74bp
MMVPPLLLLLLLGQMLRQMLMRGQPLDRHERKNEEEDGEEEDDDEKDEGE
EEGGQSIYTSTYQRGNKCQVQSN*
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mRNA from alignment at scaffold_48:149798..150113-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10204 ID=mRNA_10204|Name=jgi.p|Nanoce1779_2|610200|organism=Nannochloropsis oceanica|type=mRNA|length=316bp|location=Sequence derived from alignment at scaffold_48:149798..150113- (Nannochloropsis oceanica)
CCCCCAAAGAGAGGGCACTGCAAGCCCTCCAGCGAGAAAACGCCCCAGAT
GATGGTGCCACCGCTGCTGCTGCTGCTGCTGCTGGGACAAATGCTGAGAC
AGATGCTGATGCGCGGGCAGCCGTTGGACAGGCATGAGAGAAAGAACGAG
GAGGAGGACGGCGAGGAGGAGGACGACGACGAGAAGGACGAAGGCGAGGA
AGAGGGGGGGCAGTCAATCTACACTTCCACCTATCAGAGGGGAAACAAAT
GTCAAGTTCAAAGCAATTAAATCAAAAGCAAAATGAAAATATAGCAATCA
AGGCACATGTAGTGGG
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Coding sequence (CDS) from alignment at scaffold_48:149798..150113-

>mRNA_10204 ID=mRNA_10204|Name=jgi.p|Nanoce1779_2|610200|organism=Nannochloropsis oceanica|type=CDS|length=222bp|location=Sequence derived from alignment at scaffold_48:149798..150113- (Nannochloropsis oceanica)
ATGATGGTGCCACCGCTGCTGCTGCTGCTGCTGCTGGGACAAATGCTGAG
ACAGATGCTGATGCGCGGGCAGCCGTTGGACAGGCATGAGAGAAAGAACG
AGGAGGAGGACGGCGAGGAGGAGGACGACGACGAGAAGGACGAAGGCGAG
GAAGAGGGGGGGCAGTCAATCTACACTTCCACCTATCAGAGGGGAAACAA
ATGTCAAGTTCAAAGCAATTAA
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Synonyms
Publications