jgi.p|Nanoce1779_2|610169, mRNA_10202 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610169
Unique NamemRNA_10202
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length825
Alignment locationscaffold_48:140299..141665 +

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Properties
Property NameValue
TranscriptId610255
TrackFilteredModels2
ProteinId610169
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:140299..141665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610169gene_10202Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610169mRNA_10202-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10202CDS_10202Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10202 ID=mRNA_10202|Name=jgi.p|Nanoce1779_2|610169|organism=Nannochloropsis oceanica|type=mRNA|length=825bp
ACCGTTACCACCGCGGCTTCGGCGAGCATTATCCAGGTAACTTGAGTGAG
CTGTTTGCCATGCCTCCATGCGTGCGGTGTCACTTTCGCAGTTTATCTGC
TGCTTTTGTGGGTCGGCGTCCTCTGCAGCGACGGGGCATAGAGATGTGCC
AATCAGTCCGGCCGGCGATGCATGGCGCTTATACATGGTGAGGTTTCTTC
TTCCCCTCGCTTTATTGCAAGCCTGTGTGGAGCTCGTCGCAGCGACAGAA
CACGCAGATAATCCAGCATGTTGGTTTGAGGTTAGGGTTAAAAGGGTATA
TAATCTCCGTACTCGAGATGGAGACACCCAAGCGCAAGCAAAGCATCATC
CCCCTTCTCTTACCGACAGCAAACAGAGATCGAGCCCGACTCCAGCCTCA
TGCATCCTCACCTGCTCTCCTGTCACATTATTTTACGTTCTTGAAACTAT
TTTGCTTTATGCCAGAAGTCTACAAACCTCCTTGGATTTCACATGTTATT
TTTGTCCCTATAAATTGGCGTGTTCTGGAAACAGGTGACTAGCCTCCTCC
CGGTTAGCCCCTTCTATATACAGACAGTCTAGCCCTCTACGTCTCCTCTG
CCTCCTTCCCTCCTTCCCTCCCTCCTTTCTTTCCTTCTTTCTCCTTCCTT
CCTTCCTTCCTTCCTACCTTCCTTCCCTTCACCCCCGCTGCCCACGCGGC
AGCCTCCGTACAGGAGATGAAGACGGAGACGTGTTCAATGGCCTTCGCTC
TCCTCCCATAGACTGTCCATATGTCTCTCCCTCCATCTCAACCTCCTCCC
CTTCTTCCCACTGGGCACTGTGGCG
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protein sequence of jgi.p|Nanoce1779_2|610169

>mRNA_10202-protein ID=mRNA_10202-protein|Name=jgi.p|Nanoce1779_2|610169|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MRAVSLSQFICCFCGSASSAATGHRDVPISPAGDAWRLYMVRFLLPLALL
QACVELVAATEHADNPACWFEVRVKRVYNLRTRDGDTQAQAKHHPPSLTD
SKQRSSPTPASCILTCSPVTLFYVLETILLYARSLQTSLDFTCYFCPYKL
ACSGNR*
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mRNA from alignment at scaffold_48:140299..141665+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10202 ID=mRNA_10202|Name=jgi.p|Nanoce1779_2|610169|organism=Nannochloropsis oceanica|type=mRNA|length=1367bp|location=Sequence derived from alignment at scaffold_48:140299..141665+ (Nannochloropsis oceanica)
ACCGTTACCACCGCGGCTTCGGCGAGCATTATCCAGGTAACTTGAGTGAG
CTGTTTGCCATGCCTCCATGCGTGCGGTGTCACTTTCGCAGTTTATCTGT
TTTGGTGCCGGTGGTGACGATAACGAAGGAGGGCAGGAGGAGCAGGAGGA
AGATAAGGTGGAGGGTCTACCGCGTTTTTGGTCGGGAACGGGCCAGGCAA
AATGGACAGGCACATTAGAATACCATTCTCGGTGGTAGATGCGCGTGAGG
AGGGCTTCTTGAGTTTCCATACCGGCAGGCGGGGAATGGCGGGAGGCAGA
GGCAGGAGAATGGGGGGAGGAGGAAGTCGAAGGAGGCGGAAGAACCAGCT
TGGGACTCCAGCGGGAGGAAGAGGATGACGAAGGACGTACCTGCTGCTTT
TGTGGGTCGGCGTCCTGGTGTAATGTGTGTGCGGATGAGACCGGCGTCAA
AGGGAAAAGGCGGGGGGAGGGGTACAGGAAGGGATGGAGGGAGGAAGTTC
TGACCTCTGCAGCGACGGGGCATAGAGATGTGCCAATCAGTCCGGCCGGC
GATGCATGGCGCTTATACATGGTGAGGTTTCCTGTAGTTAGTTGCGTGCA
TGTGCGTGCGTGCGCGCGCGCGCGCGCGCGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTTTTGGGTGGGCCTTTGGACTTCCACATGAGCCGTT
TTCCCATGTGAAGTTGAGATGGGCCTCAGGCTCACTTACTTCTTCCCCTC
GCTTTATTGCAAGCCTGTGTGGAGCTCGTCGCAGCGACAGAACACGCAGA
TAATCCAGCATGTTGGTTTGAGGTTAGGGTTAAAAGGGTATATAATCTCC
GTACTCGAGATGGAGACACCCAAGCGCAAGCAAAGCATCATCCCCCTTCT
CTTACCGACAGCAAACAGAGATCGAGCCCGACTCCAGCCTCATGCATCCT
CACCTGCTCTCCTGTCACATTATTTTACGTTCTTGAAACTATTTTGCTTT
ATGCCAGAAGTCTACAAACCTCCTTGGATTTCACATGTTATTTTTGTCCC
TATAAATTGGCGTGTTCTGGAAACAGGTGACTAGCCTCCTCCCGGTTAGC
CCCTTCTATATACAGACAGTCTAGCCCTCTACGTCTCCTCTGCCTCCTTC
CCTCCTTCCCTCCCTCCTTTCTTTCCTTCTTTCTCCTTCCTTCCTTCCTT
CCTTCCTACCTTCCTTCCCTTCACCCCCGCTGCCCACGCGGCAGCCTCCG
TACAGGAGATGAAGACGGAGACGTGTTCAATGGCCTTCGCTCTCCTCCCA
TAGACTGTCCATATGTCTCTCCCTCCATCTCAACCTCCTCCCCTTCTTCC
CACTGGGCACTGTGGCG
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Coding sequence (CDS) from alignment at scaffold_48:140299..141665+

>mRNA_10202 ID=mRNA_10202|Name=jgi.p|Nanoce1779_2|610169|organism=Nannochloropsis oceanica|type=CDS|length=1884bp|location=Sequence derived from alignment at scaffold_48:140299..141665+ (Nannochloropsis oceanica)
ATGCGTGCGGTGTCACTTTCGCAGTTTATCTGCTGCTTTTGTGGGTCGGC
GTCCTCTGCAGCGACGGGGCATAGAGATGTGCCAATCAGTCCGGCCGGCG
ATGCATGGCGCTTATACATGGTGAGGTTTCTTCTTCCCCTCGCTTTATTG
CAAGCCTGTGTGGAGCTCGTCGCAGCGACAGAACACGCAGATAATCCAGC
ATGTTGGTTTGAGGTTAGGGTTAAAAGGGTATATAATCTCCGTACTCGAG
ATGGAGACACCCAAGCGCAAGCAAAGCATCATCCCCCTTCTCTTACCGAC
AGCAAACAGAGATCGAGCCCGACTCCAGCCTCATGCATCCTCACCTGCTC
TCCTGTCACATTATTTTACGTTCTTGAAACTATTTTGCTTTATGCCAGAA
GTCTACAAACCTCCTTGGATTTCACATGTTATTTTTGTCCCTATAAATTG
GCGTGTTCTGGAAACAGGTGAATGCGTGCGGTGTCACTTTCGCAGTTTAT
CTGCTGCTTTTGTGGGTCGGCGTCCTCTGCAGCGACGGGGCATAGAGATG
TGCCAATCAGTCCGGCCGGCGATGCATGGCGCTTATACATGGTGAGGTTT
CTTCTTCCCCTCGCTTTATTGCAAGCCTGTGTGGAGCTCGTCGCAGCGAC
AGAACACGCAGATAATCCAGCATGTTGGTTTGAGGTTAGGGTTAAAAGGG
TATATAATCTCCGTACTCGAGATGGAGACACCCAAGCGCAAGCAAAGCAT
CATCCCCCTTCTCTTACCGACAGCAAACAGAGATCGAGCCCGACTCCAGC
CTCATGCATCCTCACCTGCTCTCCTGTCACATTATTTTACGTTCTTGAAA
CTATTTTGCTTTATGCCAGAAGTCTACAAACCTCCTTGGATTTCACATGT
TATTTTTGTCCCTATAAATTGGCGTGTTCTGGAAACAGGTGAATGCGTGC
GGTGTCACTTTCGCAGTTTATCTGCTGCTTTTGTGGGTCGGCGTCCTCTG
CAGCGACGGGGCATAGAGATGTGCCAATCAGTCCGGCCGGCGATGCATGG
CGCTTATACATGGTGAGGTTTCTTCTTCCCCTCGCTTTATTGCAAGCCTG
TGTGGAGCTCGTCGCAGCGACAGAACACGCAGATAATCCAGCATGTTGGT
TTGAGGTTAGGGTTAAAAGGGTATATAATCTCCGTACTCGAGATGGAGAC
ACCCAAGCGCAAGCAAAGCATCATCCCCCTTCTCTTACCGACAGCAAACA
GAGATCGAGCCCGACTCCAGCCTCATGCATCCTCACCTGCTCTCCTGTCA
CATTATTTTACGTTCTTGAAACTATTTTGCTTTATGCCAGAAGTCTACAA
ACCTCCTTGGATTTCACATGTTATTTTTGTCCCTATAAATTGGCGTGTTC
TGGAAACAGGTGAATGCGTGCGGTGTCACTTTCGCAGTTTATCTGCTGCT
TTTGTGGGTCGGCGTCCTCTGCAGCGACGGGGCATAGAGATGTGCCAATC
AGTCCGGCCGGCGATGCATGGCGCTTATACATGGTGAGGTTTCTTCTTCC
CCTCGCTTTATTGCAAGCCTGTGTGGAGCTCGTCGCAGCGACAGAACACG
CAGATAATCCAGCATGTTGGTTTGAGGTTAGGGTTAAAAGGGTATATAAT
CTCCGTACTCGAGATGGAGACACCCAAGCGCAAGCAAAGCATCATCCCCC
TTCTCTTACCGACAGCAAACAGAGATCGAGCCCGACTCCAGCCTCATGCA
TCCTCACCTGCTCTCCTGTCACATTATTTTACGTTCTTGAAACTATTTTG
CTTTATGCCAGAAGTCTACAAACCTCCTTGGATTTCACATGTTATTTTTG
TCCCTATAAATTGGCGTGTTCTGGAAACAGGTGA
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Synonyms
Publications