jgi.p|Nanoce1779_2|610164, mRNA_10200 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610164
Unique NamemRNA_10200
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length771
Alignment locationscaffold_48:136714..137484 -

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Properties
Property NameValue
TranscriptId610250
TrackFilteredModels2
ProteinId610164
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:136714..137484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610164gene_10200Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610164mRNA_10200-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10200CDS_10200Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10200 ID=mRNA_10200|Name=jgi.p|Nanoce1779_2|610164|organism=Nannochloropsis oceanica|type=mRNA|length=771bp
CCTCCTCCTCGCCTTCCTCGTCTCCCTTCACTTCCTCCTCCCCCTCCAGG
GAATGCGGCACCCAAAAATAACGATACCACCTCCCTGCCCCGACTCCTTC
CTCCTCCCCAACCGCCCCTTCCTCAATCCCATCCTCGCCCACCCAGTCAC
CTTCCTCCCCCGCACCCATAGTCGACAGCGTGCCATTGCTATTCTTTTGT
GATACCCCGCCTCGTTTTCCCCTTCTTCCATAGCCGTTGCTGCTGGCAAT
GCTGCTGCTGCTGCCGCTTCCGTTATTATCCGCGCGATCCGCATGCGTAT
TCCCTTCACTGGCCGCTTCGTCCTCCATCTTTCCCTCCCCATCCTTCCCT
CCCTGTCCTTCCCTCCCTCGCCGTCGTTTTGATCTTGCAAGCATGGCCTT
CATCCGGGCCACCGCAATCGTCAGCGGTAGCACACACCCTCGTCCACTCC
CTCCCTTTTTCACCCTCCACGATGGCAACTCATCGTCCAACCCTCCCCCT
AGCCCCTGCTCCCTCCGCCGCCGTCGCTCCTCTTCTTCCTGTGGTGTCAA
TCCCACCGCCGATGGCGACGTAGAGTAGGCATCCTCAAACCAGAACATAC
TCCTCTGCTTCCCATAATTAGCCAGTGACGGTCCAAACGACACTATGGCC
GCAGGCGCCCGGGGCGTCGTCCCCAGCTCCTCTTCGCAACATGATCCCTC
CTCCTCCTCCTCCTCATCTTCAAAATTTTCCTCGTGCCCTCCCTCCTCCT
CTTTCTCGTGTTCCTCCTCCA
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protein sequence of jgi.p|Nanoce1779_2|610164

>mRNA_10200-protein ID=mRNA_10200-protein|Name=jgi.p|Nanoce1779_2|610164|organism=Nannochloropsis oceanica|type=polypeptide|length=108bp
MLLLLPLPLLSARSACVFPSLAASSSIFPSPSFPPCPSLPRRRFDLASMA
FIRATAIVSGSTHPRPLPPFFTLHDGNSSSNPPPSPCSLRRRRSSSSCGV
NPTADGDV
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mRNA from alignment at scaffold_48:136714..137484-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10200 ID=mRNA_10200|Name=jgi.p|Nanoce1779_2|610164|organism=Nannochloropsis oceanica|type=mRNA|length=771bp|location=Sequence derived from alignment at scaffold_48:136714..137484- (Nannochloropsis oceanica)
CCTCCTCCTCGCCTTCCTCGTCTCCCTTCACTTCCTCCTCCCCCTCCAGG
GAATGCGGCACCCAAAAATAACGATACCACCTCCCTGCCCCGACTCCTTC
CTCCTCCCCAACCGCCCCTTCCTCAATCCCATCCTCGCCCACCCAGTCAC
CTTCCTCCCCCGCACCCATAGTCGACAGCGTGCCATTGCTATTCTTTTGT
GATACCCCGCCTCGTTTTCCCCTTCTTCCATAGCCGTTGCTGCTGGCAAT
GCTGCTGCTGCTGCCGCTTCCGTTATTATCCGCGCGATCCGCATGCGTAT
TCCCTTCACTGGCCGCTTCGTCCTCCATCTTTCCCTCCCCATCCTTCCCT
CCCTGTCCTTCCCTCCCTCGCCGTCGTTTTGATCTTGCAAGCATGGCCTT
CATCCGGGCCACCGCAATCGTCAGCGGTAGCACACACCCTCGTCCACTCC
CTCCCTTTTTCACCCTCCACGATGGCAACTCATCGTCCAACCCTCCCCCT
AGCCCCTGCTCCCTCCGCCGCCGTCGCTCCTCTTCTTCCTGTGGTGTCAA
TCCCACCGCCGATGGCGACGTAGAGTAGGCATCCTCAAACCAGAACATAC
TCCTCTGCTTCCCATAATTAGCCAGTGACGGTCCAAACGACACTATGGCC
GCAGGCGCCCGGGGCGTCGTCCCCAGCTCCTCTTCGCAACATGATCCCTC
CTCCTCCTCCTCCTCATCTTCAAAATTTTCCTCGTGCCCTCCCTCCTCCT
CTTTCTCGTGTTCCTCCTCCA
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Coding sequence (CDS) from alignment at scaffold_48:136714..137484-

>mRNA_10200 ID=mRNA_10200|Name=jgi.p|Nanoce1779_2|610164|organism=Nannochloropsis oceanica|type=CDS|length=325bp|location=Sequence derived from alignment at scaffold_48:136714..137484- (Nannochloropsis oceanica)
ATGCTGCTGCTGCTGCCGCTTCCGTTATTATCCGCGCGATCCGCATGCGT
ATTCCCTTCACTGGCCGCTTCGTCCTCCATCTTTCCCTCCCCATCCTTCC
CTCCCTGTCCTTCCCTCCCTCGCCGTCGTTTTGATCTTGCAAGCATGGCC
TTCATCCGGGCCACCGCAATCGTCAGCGGTAGCACACACCCTCGTCCACT
CCCTCCCTTTTTCACCCTCCACGATGGCAACTCATCGTCCAACCCTCCCC
CTAGCCCCTGCTCCCTCCGCCGCCGTCGCTCCTCTTCTTCCTGTGGTGTC
AATCCCACCGCCGATGGCGACGTAG
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Synonyms
Publications