jgi.p|Nanoce1779_2|575045, mRNA_1020 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575045
Unique NamemRNA_1020
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1137
Alignment locationscaffold_2:1029704..1030840 +

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Properties
Property NameValue
TranscriptId575131
TrackFilteredModels2
ProteinId575045
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1029704..1030840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575045gene_1020Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575045mRNA_1020-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1020CDS_1020Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1020 ID=mRNA_1020|Name=jgi.p|Nanoce1779_2|575045|organism=Nannochloropsis oceanica|type=mRNA|length=1137bp
AATGACGACCACCCAATACCACTCAAGAATGACGACCACCCAATACCACT
CAAGACAGGCGCACATTTGAGCAATGAAGCCGCTTCTGCTGCTCGCTATA
AGCTCCGTCTTTCTTATTGCTCGCCTGCACACCTCTGCTGCCTTTGGAGT
TCAACTCCACCGCCGACTTTCGACAGTGCGCATGGCTATAGCTTCCCACG
GCATCTACATCGTCACTGGTTCGACAGATGGTATCGGCAAGCACACAGCC
ACCAACCTGGCCTCTCGAGGAGCCCAAGCCAAAGTTTTCGTCCACGGACG
TAACCCGGCACGGGTTACCAAGACGGTAGAGGAACTAAGGCAGCGCAACC
CTGATGGGATCGACAGCGTGGTAGGCGACTTGGGTTCCTTCGCAGACATC
AGGCGTGTAGCTGCCGAGCTACGGGCCAAAATCAAGGCCTTGTCGGGCGA
TGCACCTATCACACTCATCAATAATGCAGGGGTATTCGAGCAGAAGCGCA
AGGCTTCGGTGGAGGGGCTTGAAATGACTTTCGCCATCAACGTTGCTGCC
CCCTTTCTACTGACGGGGTTGCTGCTCCCTCTATTGCAAAAGCGAAAGCA
CAGCCGGATCATCAACATTTCCTCCATTTCTCAAGGTGGTAGTATACCAT
GGGAGGATCTACAATTGTCATTACCAGGAGCATTCAGTGATCATAGGAGC
TATTCGCTGAGCAAACTATTGATGGCCATGGTAAGTATGGAGCAAAGCGA
CCGCTTCGGTTCCTCTGAATTAGCTATTGTATGCTGTGACCCCGGCACTG
TCAACACCAAAATGCTCGAAGCCGGATGGGGCATGTATGGCATTGATGTG
TCCGCTGCGAATGATGAAACGTATCTGGCGACAGACCAGAAGGTTGGTGA
GATGAATGGTTGTTATTTTGTAAGTAAGACGCCGCGGAGGGCAAATTCTG
AAGCATATGATGGGGAGGCAAGGAGGAAATTGTGGTCGTATTTGGAGGAG
AAGACAGGATTTATTTACTAGAGAGGACAGAGGAGGGAGGTTTGAGATAA
ACATTTAAATAGCTGGAAATGCCACACGACAACACAAATAACAAAGTAAG
AAACAATGAGAAAGAATCTATTGAACGGTTCAAGCAA
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protein sequence of jgi.p|Nanoce1779_2|575045

>mRNA_1020-protein ID=mRNA_1020-protein|Name=jgi.p|Nanoce1779_2|575045|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MKPLLLLAISSVFLIARLHTSAAFGVQLHRRLSTVRMAIASHGIYIVTGS
TDGIGKHTATNLASRGAQAKVFVHGRNPARVTKTVEELRQRNPDGIDSVV
GDLGSFADIRRVAAELRAKIKALSGDAPITLINNAGVFEQKRKASVEGLE
MTFAINVAAPFLLTGLLLPLLQKRKHSRIINISSISQGGSIPWEDLQLSL
PGAFSDHRSYSLSKLLMAMVSMEQSDRFGSSELAIVCCDPGTVNTKMLEA
GWGMYGIDVSAANDETYLATDQKVGEMNGCYFVSKTPRRANSEAYDGEAR
RKLWSYLEEKTGFIY*
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mRNA from alignment at scaffold_2:1029704..1030840+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1020 ID=mRNA_1020|Name=jgi.p|Nanoce1779_2|575045|organism=Nannochloropsis oceanica|type=mRNA|length=1137bp|location=Sequence derived from alignment at scaffold_2:1029704..1030840+ (Nannochloropsis oceanica)
AATGACGACCACCCAATACCACTCAAGAATGACGACCACCCAATACCACT
CAAGACAGGCGCACATTTGAGCAATGAAGCCGCTTCTGCTGCTCGCTATA
AGCTCCGTCTTTCTTATTGCTCGCCTGCACACCTCTGCTGCCTTTGGAGT
TCAACTCCACCGCCGACTTTCGACAGTGCGCATGGCTATAGCTTCCCACG
GCATCTACATCGTCACTGGTTCGACAGATGGTATCGGCAAGCACACAGCC
ACCAACCTGGCCTCTCGAGGAGCCCAAGCCAAAGTTTTCGTCCACGGACG
TAACCCGGCACGGGTTACCAAGACGGTAGAGGAACTAAGGCAGCGCAACC
CTGATGGGATCGACAGCGTGGTAGGCGACTTGGGTTCCTTCGCAGACATC
AGGCGTGTAGCTGCCGAGCTACGGGCCAAAATCAAGGCCTTGTCGGGCGA
TGCACCTATCACACTCATCAATAATGCAGGGGTATTCGAGCAGAAGCGCA
AGGCTTCGGTGGAGGGGCTTGAAATGACTTTCGCCATCAACGTTGCTGCC
CCCTTTCTACTGACGGGGTTGCTGCTCCCTCTATTGCAAAAGCGAAAGCA
CAGCCGGATCATCAACATTTCCTCCATTTCTCAAGGTGGTAGTATACCAT
GGGAGGATCTACAATTGTCATTACCAGGAGCATTCAGTGATCATAGGAGC
TATTCGCTGAGCAAACTATTGATGGCCATGGTAAGTATGGAGCAAAGCGA
CCGCTTCGGTTCCTCTGAATTAGCTATTGTATGCTGTGACCCCGGCACTG
TCAACACCAAAATGCTCGAAGCCGGATGGGGCATGTATGGCATTGATGTG
TCCGCTGCGAATGATGAAACGTATCTGGCGACAGACCAGAAGGTTGGTGA
GATGAATGGTTGTTATTTTGTAAGTAAGACGCCGCGGAGGGCAAATTCTG
AAGCATATGATGGGGAGGCAAGGAGGAAATTGTGGTCGTATTTGGAGGAG
AAGACAGGATTTATTTACTAGAGAGGACAGAGGAGGGAGGTTTGAGATAA
ACATTTAAATAGCTGGAAATGCCACACGACAACACAAATAACAAAGTAAG
AAACAATGAGAAAGAATCTATTGAACGGTTCAAGCAA
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Coding sequence (CDS) from alignment at scaffold_2:1029704..1030840+

>mRNA_1020 ID=mRNA_1020|Name=jgi.p|Nanoce1779_2|575045|organism=Nannochloropsis oceanica|type=CDS|length=948bp|location=Sequence derived from alignment at scaffold_2:1029704..1030840+ (Nannochloropsis oceanica)
ATGAAGCCGCTTCTGCTGCTCGCTATAAGCTCCGTCTTTCTTATTGCTCG
CCTGCACACCTCTGCTGCCTTTGGAGTTCAACTCCACCGCCGACTTTCGA
CAGTGCGCATGGCTATAGCTTCCCACGGCATCTACATCGTCACTGGTTCG
ACAGATGGTATCGGCAAGCACACAGCCACCAACCTGGCCTCTCGAGGAGC
CCAAGCCAAAGTTTTCGTCCACGGACGTAACCCGGCACGGGTTACCAAGA
CGGTAGAGGAACTAAGGCAGCGCAACCCTGATGGGATCGACAGCGTGGTA
GGCGACTTGGGTTCCTTCGCAGACATCAGGCGTGTAGCTGCCGAGCTACG
GGCCAAAATCAAGGCCTTGTCGGGCGATGCACCTATCACACTCATCAATA
ATGCAGGGGTATTCGAGCAGAAGCGCAAGGCTTCGGTGGAGGGGCTTGAA
ATGACTTTCGCCATCAACGTTGCTGCCCCCTTTCTACTGACGGGGTTGCT
GCTCCCTCTATTGCAAAAGCGAAAGCACAGCCGGATCATCAACATTTCCT
CCATTTCTCAAGGTGGTAGTATACCATGGGAGGATCTACAATTGTCATTA
CCAGGAGCATTCAGTGATCATAGGAGCTATTCGCTGAGCAAACTATTGAT
GGCCATGGTAAGTATGGAGCAAAGCGACCGCTTCGGTTCCTCTGAATTAG
CTATTGTATGCTGTGACCCCGGCACTGTCAACACCAAAATGCTCGAAGCC
GGATGGGGCATGTATGGCATTGATGTGTCCGCTGCGAATGATGAAACGTA
TCTGGCGACAGACCAGAAGGTTGGTGAGATGAATGGTTGTTATTTTGTAA
GTAAGACGCCGCGGAGGGCAAATTCTGAAGCATATGATGGGGAGGCAAGG
AGGAAATTGTGGTCGTATTTGGAGGAGAAGACAGGATTTATTTACTAG
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Synonyms
Publications