jgi.p|Nanoce1779_2|576228, mRNA_102 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576228
Unique NamemRNA_102
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1333
Alignment locationscaffold_3:278250..279582 -

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Properties
Property NameValue
TranscriptId576314
TrackFilteredModels2
ProteinId576228
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:278250..279582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576228gene_102Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576228mRNA_102-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_102CDS_102Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_102 ID=mRNA_102|Name=jgi.p|Nanoce1779_2|576228|organism=Nannochloropsis oceanica|type=mRNA|length=1333bp
ACAGGCCTGTCGCGTGCTTGCCTGAATTTTACCCTTGTCTCGGGCTTCGG
AATGCGCGGACCAGCAGCAGCCCTCCAACAACCGTCATCAGCCCCGGCCG
CCTCAAGAAGACACAACAGGACCATGGCCACTGTTCCCCCCTTCTCGCTC
CTACTCCTCTCCTTCCTCCTTCTCGCGCTGCCCACCACTATCTCTGCCTT
CCTTTTTTACCCTAACCGTTTATCGGGGCGCGCGGCGGGTGCCGTCCCCC
GCATCCAACTCTCGGCCCCTGCCGGCCCAAGTTCTTCAACTCCTTCCTAC
GGCGTATATCAGCACAACACAGTCCTATACGCTCGACGGCGGCGCAAGGG
TGATTCCGACGCGGACTACGAACGCTTTGACCTGGACGAGCTGCGTGTCG
AGAAGCGCTTCGAGGAGGTAGAGGAGATTGACCCCGAGATGTTCCGACCG
TCCAAAATGGAGTACTACGTGCCTCCTCCGGTGGAGGAAATCGAGCAATG
GGACGTGACTGATACTAGATACATCGCCATTGGCCTTGATAGAGATGGCG
ATGAGATCTTTCGGGAGCAGAGGCTGCCGAATTGTTACCTGCATCTGGCC
TGGGCCCGACGATCTTACTTAGATCAACGGAGCCCTGTGAGTGTCTGGTG
GGATTACGCGTTGGTCCGAGAGGACTTACAGGGTAACAGGGGTAATTTGT
TCGGGATGAATGCATCGTCAGCTTCTCTTGTCAAGGCCTTCGTCGAGCTT
GACCCGTACAAGAAGTTGGGGGTTTACAAGAGTTTGAAGGGATACCGGTG
GAACCCTCTCAAAGACCCTGACCTTCTCTACGCGCCTCGGGTGCAATTCG
CGGTGGTGGCGCTCGATAAAGCAGATGCCTTGCCCTTGAGGATGGCGACC
CGCGAGGCCCACCTTGCTTACATGCGAAGCTCAGGGAGGGTGGTAACAGC
GGGGCCGCTTTTCGACTTGGACGCCGAAGACGGGTCCCCGGTGGGTTCGT
TGGTGGTCTTCAACGCGGAAGATACGGAGGAGGCAAGGGCATTTATTGCT
GATGATCCATACGTGAAAGCGGGGTTATTTGGTGAGACCTTCTTGACGCA
ATTGGCGGAATTGGACGTGACGGGGCAGCACCTGGATAGGCAGTGGGAGA
AGTACCAGATGGAGGAAAACCATTACGATCCCGTGCATGACTTGATGGTG
GGGTGGGGTTTGATCAAGGGGGAGGAGTAGAGGAGTAGAACGCGAAAAAG
AGGGAGAGGAAAGGAATATTTTGAGGGATTAAAATAATAAGCAGACATAT
CGGACCAAAAAAGAAATTAAGCTCTTGGTTATC
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protein sequence of jgi.p|Nanoce1779_2|576228

>mRNA_102-protein ID=mRNA_102-protein|Name=jgi.p|Nanoce1779_2|576228|organism=Nannochloropsis oceanica|type=polypeptide|length=393bp
MRGPAAALQQPSSAPAASRRHNRTMATVPPFSLLLLSFLLLALPTTISAF
LFYPNRLSGRAAGAVPRIQLSAPAGPSSSTPSYGVYQHNTVLYARRRRKG
DSDADYERFDLDELRVEKRFEEVEEIDPEMFRPSKMEYYVPPPVEEIEQW
DVTDTRYIAIGLDRDGDEIFREQRLPNCYLHLAWARRSYLDQRSPVSVWW
DYALVREDLQGNRGNLFGMNASSASLVKAFVELDPYKKLGVYKSLKGYRW
NPLKDPDLLYAPRVQFAVVALDKADALPLRMATREAHLAYMRSSGRVVTA
GPLFDLDAEDGSPVGSLVVFNAEDTEEARAFIADDPYVKAGLFGETFLTQ
LAELDVTGQHLDRQWEKYQMEENHYDPVHDLMVGWGLIKGEE*
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mRNA from alignment at scaffold_3:278250..279582-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_102 ID=mRNA_102|Name=jgi.p|Nanoce1779_2|576228|organism=Nannochloropsis oceanica|type=mRNA|length=1333bp|location=Sequence derived from alignment at scaffold_3:278250..279582- (Nannochloropsis oceanica)
ACAGGCCTGTCGCGTGCTTGCCTGAATTTTACCCTTGTCTCGGGCTTCGG
AATGCGCGGACCAGCAGCAGCCCTCCAACAACCGTCATCAGCCCCGGCCG
CCTCAAGAAGACACAACAGGACCATGGCCACTGTTCCCCCCTTCTCGCTC
CTACTCCTCTCCTTCCTCCTTCTCGCGCTGCCCACCACTATCTCTGCCTT
CCTTTTTTACCCTAACCGTTTATCGGGGCGCGCGGCGGGTGCCGTCCCCC
GCATCCAACTCTCGGCCCCTGCCGGCCCAAGTTCTTCAACTCCTTCCTAC
GGCGTATATCAGCACAACACAGTCCTATACGCTCGACGGCGGCGCAAGGG
TGATTCCGACGCGGACTACGAACGCTTTGACCTGGACGAGCTGCGTGTCG
AGAAGCGCTTCGAGGAGGTAGAGGAGATTGACCCCGAGATGTTCCGACCG
TCCAAAATGGAGTACTACGTGCCTCCTCCGGTGGAGGAAATCGAGCAATG
GGACGTGACTGATACTAGATACATCGCCATTGGCCTTGATAGAGATGGCG
ATGAGATCTTTCGGGAGCAGAGGCTGCCGAATTGTTACCTGCATCTGGCC
TGGGCCCGACGATCTTACTTAGATCAACGGAGCCCTGTGAGTGTCTGGTG
GGATTACGCGTTGGTCCGAGAGGACTTACAGGGTAACAGGGGTAATTTGT
TCGGGATGAATGCATCGTCAGCTTCTCTTGTCAAGGCCTTCGTCGAGCTT
GACCCGTACAAGAAGTTGGGGGTTTACAAGAGTTTGAAGGGATACCGGTG
GAACCCTCTCAAAGACCCTGACCTTCTCTACGCGCCTCGGGTGCAATTCG
CGGTGGTGGCGCTCGATAAAGCAGATGCCTTGCCCTTGAGGATGGCGACC
CGCGAGGCCCACCTTGCTTACATGCGAAGCTCAGGGAGGGTGGTAACAGC
GGGGCCGCTTTTCGACTTGGACGCCGAAGACGGGTCCCCGGTGGGTTCGT
TGGTGGTCTTCAACGCGGAAGATACGGAGGAGGCAAGGGCATTTATTGCT
GATGATCCATACGTGAAAGCGGGGTTATTTGGTGAGACCTTCTTGACGCA
ATTGGCGGAATTGGACGTGACGGGGCAGCACCTGGATAGGCAGTGGGAGA
AGTACCAGATGGAGGAAAACCATTACGATCCCGTGCATGACTTGATGGTG
GGGTGGGGTTTGATCAAGGGGGAGGAGTAGAGGAGTAGAACGCGAAAAAG
AGGGAGAGGAAAGGAATATTTTGAGGGATTAAAATAATAAGCAGACATAT
CGGACCAAAAAAGAAATTAAGCTCTTGGTTATC
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Coding sequence (CDS) from alignment at scaffold_3:278250..279582-

>mRNA_102 ID=mRNA_102|Name=jgi.p|Nanoce1779_2|576228|organism=Nannochloropsis oceanica|type=CDS|length=1179bp|location=Sequence derived from alignment at scaffold_3:278250..279582- (Nannochloropsis oceanica)
ATGCGCGGACCAGCAGCAGCCCTCCAACAACCGTCATCAGCCCCGGCCGC
CTCAAGAAGACACAACAGGACCATGGCCACTGTTCCCCCCTTCTCGCTCC
TACTCCTCTCCTTCCTCCTTCTCGCGCTGCCCACCACTATCTCTGCCTTC
CTTTTTTACCCTAACCGTTTATCGGGGCGCGCGGCGGGTGCCGTCCCCCG
CATCCAACTCTCGGCCCCTGCCGGCCCAAGTTCTTCAACTCCTTCCTACG
GCGTATATCAGCACAACACAGTCCTATACGCTCGACGGCGGCGCAAGGGT
GATTCCGACGCGGACTACGAACGCTTTGACCTGGACGAGCTGCGTGTCGA
GAAGCGCTTCGAGGAGGTAGAGGAGATTGACCCCGAGATGTTCCGACCGT
CCAAAATGGAGTACTACGTGCCTCCTCCGGTGGAGGAAATCGAGCAATGG
GACGTGACTGATACTAGATACATCGCCATTGGCCTTGATAGAGATGGCGA
TGAGATCTTTCGGGAGCAGAGGCTGCCGAATTGTTACCTGCATCTGGCCT
GGGCCCGACGATCTTACTTAGATCAACGGAGCCCTGTGAGTGTCTGGTGG
GATTACGCGTTGGTCCGAGAGGACTTACAGGGTAACAGGGGTAATTTGTT
CGGGATGAATGCATCGTCAGCTTCTCTTGTCAAGGCCTTCGTCGAGCTTG
ACCCGTACAAGAAGTTGGGGGTTTACAAGAGTTTGAAGGGATACCGGTGG
AACCCTCTCAAAGACCCTGACCTTCTCTACGCGCCTCGGGTGCAATTCGC
GGTGGTGGCGCTCGATAAAGCAGATGCCTTGCCCTTGAGGATGGCGACCC
GCGAGGCCCACCTTGCTTACATGCGAAGCTCAGGGAGGGTGGTAACAGCG
GGGCCGCTTTTCGACTTGGACGCCGAAGACGGGTCCCCGGTGGGTTCGTT
GGTGGTCTTCAACGCGGAAGATACGGAGGAGGCAAGGGCATTTATTGCTG
ATGATCCATACGTGAAAGCGGGGTTATTTGGTGAGACCTTCTTGACGCAA
TTGGCGGAATTGGACGTGACGGGGCAGCACCTGGATAGGCAGTGGGAGAA
GTACCAGATGGAGGAAAACCATTACGATCCCGTGCATGACTTGATGGTGG
GGTGGGGTTTGATCAAGGGGGAGGAGTAG
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Synonyms
Publications