jgi.p|Nanoce1779_2|547549, mRNA_10199 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|547549
Unique Name	mRNA_10199
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1595
Alignment location	scaffold_48:133444..135393 -

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Properties


Property Name	Value
TranscriptId	547635
Track	FilteredModels2
ProteinId	547549

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_48	supercontig	scaffold_48:133444..135393 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|547549	gene_10199	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|547549	mRNA_10199-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10199	CDS_10199	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_48:133444..135393-
coding sequence from alignment at scaffold_48:133444..135393-

mRNA sequence

>mRNA_10199 ID=mRNA_10199|Name=jgi.p|Nanoce1779_2|547549|organism=Nannochloropsis oceanica|type=mRNA|length=1595bp
CGATCGCAGGCACTGCTTCATCTCCGCCTCCTTCTTCTCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCTCGTCTTCCT
CCTCGTCTTCTTCCTCCTCCCCCGCCGCCTCCTCGTTCCCTAGCCACCAG
AACAAGCGCAGCGCCTTCAGTAGCATGTGGGAGTCGATCTCATCTCAGTC
CCCGACGTCCGCTGACTGCTCACCCCATGACAGCCCTGCCATCACGTACT
GGATCAAGGACTCGCTTTACGTTGCCCTGACCAACCGTTGTAATACCATC
CCCCTCCACGCCACCCGCGGGCCTGGCTTTTCACTCGAGGACTTTCGCCC
CCTCCCTCCCTCCTTCGAACCAAGTGAGGAGGAGCTCCTCTGCTCCGTCT
CCGGCGCCTTGGCGGCCTCTCACTCCCTCCTCAACAGGGAATGGACCGAG
GTCTGCTTTGCCGGCTGGGGGGAACCGACCCTCCGATGGGCGACGGTGCT
GGCGGTTGCACAGGGTCTTCGGAAGGGCAATCGGGCGCGAGGGGGAGGGG
GAGGAAGAGAAGGAGCAAGAGGGGGAGGAGGGGGTGGGCTGCGCTTGAGA
TTGAACACGAACGGCTTGGGGAACGTGGCACAACAGCGGAAGATAGTCTC
GGAGCTGGCCGAGGCGTTTGAGAGCGTGACGGTGGCCGTGAACACCGCAG
ACGCGGCCCAGTACGACACCTTAATGCACCCGGACCTGACCATGCGCGCC
GAGGCTGAAGCTATCCGCCCTTACCTCACCTCCTCCTTCGCCGACGAGAG
CGGGACCGAGGGAGGGAAGGAGGGCGGGATGGAGGGCGGGATGGAGGGCG
AGGCCTTGGGGGAGGTGTTGTCGTTTGTTAAAGAGTGTGTGGAAGCGGGT
GTTAAGACGCAAATAACGGCAGTGGACCGACCTGACGTGGATGTTGAAGC
TGTCCGGGCCTTGGCCAAGGTCATGGGCGCTGACTTTAGGGTGCGACCCT
ATTTTGAGTGAGAGGGAGGAAGGGGAGGGACGAGGGAAGTAGGGAGGGGA
GGGGGACGGCGGCCTGTATATATGCCTTTGGGGGGAGACGCGTCGGGAGT
GGAGGGATCGGGCATGCATTGTGTGTATATAAGAGGGGAAAGATCGCGCA
GAAAGGTGAATTGCCAATGTTTGTTGTATGTGTGCATGTAGACAGAAGCA
CGATGGACATGTGTGACTGGGACAGAACACGGATATGAAAACGAAAAAGA
AACTGAAAAAGAAGAGAAAGGGGGCCCTCGAAAAAGAAAAAGATTTGAAG
AAGCGAGAGTGAGTAGAAGAGAAGAGAGAGCGGGGAAGAATTGCTCTCAG
GTTTGCTGGGCATGGCATCAGCCATGAATAATTATGCGAGTAACTACTCT
TTACCTCAGGATGAATGTATATGTAACGAGTGTACCGAAGAGAGGGATGA
CATGTATTGTTCACGGTGTGCATGCTGTGGCAGGACTCGGTTCAATCGGA
CGGGTTGAGAATTGGCGGAGGAGGAAAAGGAAAAGAAGGGTATCGAGAAG
GAGCAGAGGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAG

protein sequence of jgi.p|Nanoce1779_2|547549

>mRNA_10199-protein ID=mRNA_10199-protein|Name=jgi.p|Nanoce1779_2|547549|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MWESISSQSPTSADCSPHDSPAITYWIKDSLYVALTNRCNTIPLHATRGP
GFSLEDFRPLPPSFEPSEEELLCSVSGALAASHSLLNREWTEVCFAGWGE
PTLRWATVLAVAQGLRKGNRARGGGGGREGARGGGGGGLRLRLNTNGLGN
VAQQRKIVSELAEAFESVTVAVNTADAAQYDTLMHPDLTMRAEAEAIRPY
LTSSFADESGTEGGKEGGMEGGMEGEALGEVLSFVKECVEAGVKTQITAV
DRPDVDVEAVRALAKVMGADFRVRPYFE*

mRNA from alignment at scaffold_48:133444..135393-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10199 ID=mRNA_10199|Name=jgi.p|Nanoce1779_2|547549|organism=Nannochloropsis oceanica|type=mRNA|length=1950bp|location=Sequence derived from alignment at scaffold_48:133444..135393- (Nannochloropsis oceanica)
CGATCGCAGGCACTGCTTCATCTCCGCCTCCTTCTTCTCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCTCGTCTTCCT
CCTCGTCTTCTTCCTCCTCCCCCGCCGCCTCCTCGTTCCCTAGCCACCAG
AACAAGCGCAGCGCCTTCAGTAGCATGTGGGAGTCGATCTCATCTCAGTC
CCCGACGTCCGCTGACTGCTCACCCCATGACAGCCCTGCCATCACGTACT
GGATCAAGGACTCGCTTTACGTTGCCCTGACCAACCGTTGTAATGTACGT
GCCTTTGCTTCTTCCACCCATCTCCTTCCTCTCCCTCCCATCTCCACTTC
TCCCCCCCCCCCCCCTCCTTCACCACGTTGATCTGTGCCTGTCAAACATG
ACCTTGCCATCACCTTTCGGTCGCTCCAACCCTGTGACCCCTTCCCCACC
CTCCCTTCCTCACAGACCATCCCCCTCCACGCCACCCGCGGGCCTGGCTT
TTCACTCGAGGACTTTCGCCCCCTCCCTCCCTCCTTCGAACCAAGTGAGG
AGGAGCTCCTCTGCTCCGTCTCCGGCGCCTTGGCGGCCTCTCACTCCCTC
CTCAACAGGGAATGGACCGAGGTCTGCTTTGCCGGCTGGGGGGAACCGAC
CCTCCGATGGGCGACGGTGCTGGCGGTTGCACAGGGTCTTCGGAAGGGCA
ATCGGGCGCGAGGGGGAGGGGGAGGAAGAGAAGGAGCAAGAGGGGGAGGA
GGGGGTGGGCTGCGCTTGAGATTGAACACGAACGGCTTGGGGAACGTGGC
ACAACAGCGGAAGATAGTCTCGGAGCTGGCCGAGGCGTTTGAGAGCGTGA
CGGGTAAGGAGGGAGGGAGGGAGGGAGGGGAGGAAGGGGGGAAGAACGGG
GTAGTGGATCACTCGAGAGGTAGAGCCTTGCTTTGGTGGTTGTTTCTGTT
GGGGCGGCCCTTGTTTGTGAGAAAATGCCTCACGTCCGTACCCCCCCTCC
CTCCCTCCCTCACTCCCTCCCTCCCTCCCTCCCTCAGTGGCCGTGAACAC
CGCAGACGCGGCCCAGTACGACACCTTAATGCACCCGGACCTGACCATGC
GCGCCGAGGCTGAAGCTATCCGCCCTTACCTCACCTCCTCCTTCGCCGAC
GAGAGCGGGACCGAGGGAGGGAAGGAGGGCGGGATGGAGGGCGGGATGGA
GGGCGAGGCCTTGGGGGAGGTGTTGTCGTTTGTTAAAGAGTGTGTGGAAG
CGGGTGTTAAGACGCAAATAACGGCAGTGGACCGACCTGACGTGGATGTT
GAAGCTGTCCGGGCCTTGGCCAAGGTCATGGGCGCTGACTTTAGGGTGCG
ACCCTATTTTGAGTGAGAGGGAGGAAGGGGAGGGACGAGGGAAGTAGGGA
GGGGAGGGGGACGGCGGCCTGTATATATGCCTTTGGGGGGAGACGCGTCG
GGAGTGGAGGGATCGGGCATGCATTGTGTGTATATAAGAGGGGAAAGATC
GCGCAGAAAGGTGAATTGCCAATGTTTGTTGTATGTGTGCATGTAGACAG
AAGCACGATGGACATGTGTGACTGGGACAGAACACGGATATGAAAACGAA
AAAGAAACTGAAAAAGAAGAGAAAGGGGGCCCTCGAAAAAGAAAAAGATT
TGAAGAAGCGAGAGTGAGTAGAAGAGAAGAGAGAGCGGGGAAGAATTGCT
CTCAGGTTTGCTGGGCATGGCATCAGCCATGAATAATTATGCGAGTAACT
ACTCTTTACCTCAGGATGAATGTATATGTAACGAGTGTACCGAAGAGAGG
GATGACATGTATTGTTCACGGTGTGCATGCTGTGGCAGGACTCGGTTCAA
TCGGACGGGTTGAGAATTGGCGGAGGAGGAAAAGGAAAAGAAGGGTATCG
AGAAGGAGCAGAGGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAG

Coding sequence (CDS) from alignment at scaffold_48:133444..135393-

>mRNA_10199 ID=mRNA_10199|Name=jgi.p|Nanoce1779_2|547549|organism=Nannochloropsis oceanica|type=CDS|length=2511bp|location=Sequence derived from alignment at scaffold_48:133444..135393- (Nannochloropsis oceanica)
TGGCCGTGAACACCGCAGACGCGGCCCAGTACGACACCTTAATGCACCCG
GACCTGACCATGCGCGCCGAGGCTGAAGCTATCCGCCCTTACCTCACCTC
CTCCTTCGCCGACGAGAGCGGGACCGAGGGAGGGAAGGAGGGCGGGATGG
AGGGCGGGATGGAGGGCGAGGCCTTGGGGGAGGTGTTGTCGTTTGTTAAA
GAGTGTGTGGAAGCGGGTGTTAAGACGCAAATAACGGCAGTGGACCGACC
TGACGTGGATGTTGAAGCTGTCCGGGCCTTGGCCAAGGTCATGGGCGCTG
ACTTTAGGGTGCGACCCTATTTTGAGTGAACCATCCCCCTCCACGCCACC
CGCGGGCCTGGCTTTTCACTCGAGGACTTTCGCCCCCTCCCTCCCTCCTT
CGAACCAAGTGAGGAGGAGCTCCTCTGCTCCGTCTCCGGCGCCTTGGCGG
CCTCTCACTCCCTCCTCAACAGGGAATGGACCGAGGTCTGCTTTGCCGGC
TGGGGGGAACCGACCCTCCGATGGGCGACGGTGCTGGCGGTTGCACAGGG
TCTTCGGAAGGGCAATCGGGCGCGAGGGGGAGGGGGAGGAAGAGAAGGAG
CAAGAGGGGGAGGAGGGGGTGGGCTGCGCTTGAGATTGAACACGAACGGC
TTGGGGAACGTGGCACAACAGCGGAAGATAGTCTCGGAGCTGGCCGAGGC
GTTTGAGAGCGTGACGGATGTGGGAGTCGATCTCATCTCAGTCCCCGACG
TCCGCTGACTGCTCACCCCATGACAGCCCTGCCATCACGTACTGGATCAA
GGACTCGCTTTACGTTGCCCTGACCAACCGTTGTAATTGGCCGTGAACAC
CGCAGACGCGGCCCAGTACGACACCTTAATGCACCCGGACCTGACCATGC
GCGCCGAGGCTGAAGCTATCCGCCCTTACCTCACCTCCTCCTTCGCCGAC
GAGAGCGGGACCGAGGGAGGGAAGGAGGGCGGGATGGAGGGCGGGATGGA
GGGCGAGGCCTTGGGGGAGGTGTTGTCGTTTGTTAAAGAGTGTGTGGAAG
CGGGTGTTAAGACGCAAATAACGGCAGTGGACCGACCTGACGTGGATGTT
GAAGCTGTCCGGGCCTTGGCCAAGGTCATGGGCGCTGACTTTAGGGTGCG
ACCCTATTTTGAGTGAACCATCCCCCTCCACGCCACCCGCGGGCCTGGCT
TTTCACTCGAGGACTTTCGCCCCCTCCCTCCCTCCTTCGAACCAAGTGAG
GAGGAGCTCCTCTGCTCCGTCTCCGGCGCCTTGGCGGCCTCTCACTCCCT
CCTCAACAGGGAATGGACCGAGGTCTGCTTTGCCGGCTGGGGGGAACCGA
CCCTCCGATGGGCGACGGTGCTGGCGGTTGCACAGGGTCTTCGGAAGGGC
AATCGGGCGCGAGGGGGAGGGGGAGGAAGAGAAGGAGCAAGAGGGGGAGG
AGGGGGTGGGCTGCGCTTGAGATTGAACACGAACGGCTTGGGGAACGTGG
CACAACAGCGGAAGATAGTCTCGGAGCTGGCCGAGGCGTTTGAGAGCGTG
ACGGATGTGGGAGTCGATCTCATCTCAGTCCCCGACGTCCGCTGACTGCT
CACCCCATGACAGCCCTGCCATCACGTACTGGATCAAGGACTCGCTTTAC
GTTGCCCTGACCAACCGTTGTAATTGGCCGTGAACACCGCAGACGCGGCC
CAGTACGACACCTTAATGCACCCGGACCTGACCATGCGCGCCGAGGCTGA
AGCTATCCGCCCTTACCTCACCTCCTCCTTCGCCGACGAGAGCGGGACCG
AGGGAGGGAAGGAGGGCGGGATGGAGGGCGGGATGGAGGGCGAGGCCTTG
GGGGAGGTGTTGTCGTTTGTTAAAGAGTGTGTGGAAGCGGGTGTTAAGAC
GCAAATAACGGCAGTGGACCGACCTGACGTGGATGTTGAAGCTGTCCGGG
CCTTGGCCAAGGTCATGGGCGCTGACTTTAGGGTGCGACCCTATTTTGAG
TGAACCATCCCCCTCCACGCCACCCGCGGGCCTGGCTTTTCACTCGAGGA
CTTTCGCCCCCTCCCTCCCTCCTTCGAACCAAGTGAGGAGGAGCTCCTCT
GCTCCGTCTCCGGCGCCTTGGCGGCCTCTCACTCCCTCCTCAACAGGGAA
TGGACCGAGGTCTGCTTTGCCGGCTGGGGGGAACCGACCCTCCGATGGGC
GACGGTGCTGGCGGTTGCACAGGGTCTTCGGAAGGGCAATCGGGCGCGAG
GGGGAGGGGGAGGAAGAGAAGGAGCAAGAGGGGGAGGAGGGGGTGGGCTG
CGCTTGAGATTGAACACGAACGGCTTGGGGAACGTGGCACAACAGCGGAA
GATAGTCTCGGAGCTGGCCGAGGCGTTTGAGAGCGTGACGGATGTGGGAG
TCGATCTCATCTCAGTCCCCGACGTCCGCTGACTGCTCACCCCATGACAG
CCCTGCCATCACGTACTGGATCAAGGACTCGCTTTACGTTGCCCTGACCA
ACCGTTGTAAT

Synonyms

Publications