jgi.p|Nanoce1779_2|626398, mRNA_10194 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|626398
Unique NamemRNA_10194
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1038
Alignment locationscaffold_48:116707..118186 -

Link to JBrowse

Properties
Property NameValue
TranscriptId626484
TrackFilteredModels2
ProteinId626398
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:116707..118186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626398gene_10194Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626398mRNA_10194-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10194CDS_10194Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10194 ID=mRNA_10194|Name=jgi.p|Nanoce1779_2|626398|organism=Nannochloropsis oceanica|type=mRNA|length=1038bp
TCTGCCCCATCAGCACCAATTTCTAAATTTTAGCTGGCTTGTTCCCTGGA
CACTCTCACTTACCATCGTCGTCACTTGAAATACATATCTTGATGCCTTG
TCGACATACAGGGGTGGCGCTATCCCGGGAGGGAAAATACGGGGCCTTCG
GGGTGGTGCATCGGGCGCGGCGGAAGCGGGATGGGAAGATTTACGTGATC
AAGACAGTGCCTTTGACGAATTTAAAGGATTCGGAACGGTCCGAGGCGGT
GAATGAAGTGAACATTCTCGCATCAATCGCCTCCTCGTACGTTGTCAAGT
ATTACGACTCCTTCGTGGAGCACGACGAGTTGCACATCGTCATGGAGTAC
TGCAACCGCGGGGACCTCCAACGCATCATCTACAAGCTCAAAAAGGAGAA
GTACCGCAGCCTAGCCGAAGACAAAATATGGGCCATCTTCGTCCAAGTCG
CCCTTGGGCTGCACCATCTGCACTCCCGGCAGATCCTCCACCGGGACATG
AAAGCTGCCAATGTCTTCATTCACAAAGACGAGGCCACCGGCCGACAATT
CGTCAAAATCGGCGACCTGGGAGTAGCTAAGCTCCTCACCAACAATACGT
CCTTTGCCACTACCATGGTTGGCACCCCCTACTACCTTTCCCCCGAGCTT
TGCCAAAACAAACGGTACAATGAACGCTCTGACGTCTGGTCTCTCGGCGT
GCTCCTCTACCAGTGCTGCACCCTCCGCCTGCCCTTCGATGCCTCCAACC
CCATCACCCTCATGACCAAAATCATCAAAGGCAAATACGAGCCTGTTTCC
TCCAAGTACCTCAGCCCCCATCTCGGGGAGCTCGTCCGCACCCTCCTGAC
CACAGATTCGGGGCTCCGGCCTTCCCTTAAGCAGCTGTTGAGCATTCCCT
TCGTTCAGGAGAAATCTCCCTGCCTTGGCTCTATCTTTGAGTGCGATTCC
TCCGGAACCTGTCACAGCCATGGGAAAAGATGACCAGCCCAACCCTCCCC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
back to top

protein sequence of jgi.p|Nanoce1779_2|626398

>mRNA_10194-protein ID=mRNA_10194-protein|Name=jgi.p|Nanoce1779_2|626398|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MPCRHTGVALSREGKYGAFGVVHRARRKRDGKIYVIKTVPLTNLKDSERS
EAVNEVNILASIASSYVVKYYDSFVEHDELHIVMEYCNRGDLQRIIYKLK
KEKYRSLAEDKIWAIFVQVALGLHHLHSRQILHRDMKAANVFIHKDEATG
RQFVKIGDLGVAKLLTNNTSFATTMVGTPYYLSPELCQNKRYNERSDVWS
LGVLLYQCCTLRLPFDASNPITLMTKIIKGKYEPVSSKYLSPHLGELVRT
LLTTDSGLRPSLKQLLSIPFVQEKSPCLGSIFECDSSGTCHSHGKR*
back to top

mRNA from alignment at scaffold_48:116707..118186-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10194 ID=mRNA_10194|Name=jgi.p|Nanoce1779_2|626398|organism=Nannochloropsis oceanica|type=mRNA|length=1480bp|location=Sequence derived from alignment at scaffold_48:116707..118186- (Nannochloropsis oceanica)
TCTGCCCCATCAGCACCAATTTCTAAATTTTAGCTGGCTTGTTCCCTGGA
CACTCTCACTTACCATCGTCGTCACTTGAAATACATATCTTGATGCCTTG
TCGACATACAGGGGTGGCGCTATCCCGGGAGGGAAAATACGTGAGGCTAT
CAAACCAGAGGACACGTCCTAGCTTGTCACACTTTCATTCACACGACGAA
TGGGCCCACATTCACCACCAACAACATGCACAAACAGAAATCTACAAACA
ATTAGGAGGCTTCACATGCAAGATCCCAGGTAGCCAAAGATTCCACAAGT
TATGGACAACTGTGTCAGCCACGGGGCCTTGCTCCCGACAGGCCACAAGG
CCATGGAGGCCCTTGAAACAGCCGACGCCGCGGGCAGCTTGCGGCAGCAG
CGACCCTCCTCGACGTCAATTAACAAGCGTAGTCCATCCCGTTCTTCACC
CCCTTCGACCACGTCGCGCTTGCCCTCGTCCTTGTCGGATTTTGACGTGG
ACGAACGACTGGGAAAGGGGGCCTTCGGGGTGGTGCATCGGGCGCGGCGG
AAGCGGGATGGGAAGATTTACGTGATCAAGACAGTGCCTTTGACGAATTT
AAAGGATTCGGAACGGTCCGAGGCGGTGAATGAAGTGAACATTCTCGCAT
CAATCGCCTCCTCGTACGTTGTCAAGTATTACGACTCCTTCGTGGAGCAC
GACGAGTTGCACATCGTCATGGAGTACTGCAACCGCGGGGACCTCCAACG
CATCATCTACAAGCTCAAAAAGGAGAAGTACCGCAGCCTAGCCGAAGACA
AAATATGGGCCATCTTCGTCCAAGTCGCCCTTGGGCTGCACCATCTGCAC
TCCCGGCAGATCCTCCACCGGGACATGAAAGCTGCCAATGTCTTCATTCA
CAAAGACGAGGCCACCGGCCGACAATTCGTCAAAATCGGCGACCTGGGAG
TAGCTAAGCTCCTCACCAACAATACGTCCTTTGCCACTACCATGGTTGGC
ACCCCCTACTACCTTTCCCCCGAGCTTTGCCAAAACAAACGGTACAATGA
ACGCTCTGACGTCTGGTCTCTCGGCGTGCTCCTCTACCAGTGCTGCACCC
TCCGCCTGCCCTTCGATGCCTCCAACCCCATCACCCTCATGACCAAAATC
ATCAAAGGCAAATACGAGCCTGTTTCCTCCAAGTACCTCAGCCCCCATCT
CGGGGAGCTCGTCCGCACCCTCCTGACCACAGATTCGGGGCTCCGGCCTT
CCCTTAAGCAGCTGTTGAGCATTCCCTTCGTTCAGGAGAAATGTCTCGCC
TTCGGGTTCTCACTTCCCGTAGACGTGCCCGTTGCACCTCTCTCTCCCCC
ACCGCAGCTCCCTGCCTTGGCTCTATCTTTGAGTGCGATTCCTCCGGAAC
CTGTCACAGCCATGGGAAAAGATGACCAGCCCAACCCTCCCCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
back to top

Coding sequence (CDS) from alignment at scaffold_48:116707..118186-

>mRNA_10194 ID=mRNA_10194|Name=jgi.p|Nanoce1779_2|626398|organism=Nannochloropsis oceanica|type=CDS|length=2673bp|location=Sequence derived from alignment at scaffold_48:116707..118186- (Nannochloropsis oceanica)
CTCCCTGCCTTGGCTCTATCTTTGAGTGCGATTCCTCCGGAACCTGTCAC
AGCCATGGGAAAAGATGAGGGGCCTTCGGGGTGGTGCATCGGGCGCGGCG
GAAGCGGGATGGGAAGATTTACGTGATCAAGACAGTGCCTTTGACGAATT
TAAAGGATTCGGAACGGTCCGAGGCGGTGAATGAAGTGAACATTCTCGCA
TCAATCGCCTCCTCGTACGTTGTCAAGTATTACGACTCCTTCGTGGAGCA
CGACGAGTTGCACATCGTCATGGAGTACTGCAACCGCGGGGACCTCCAAC
GCATCATCTACAAGCTCAAAAAGGAGAAGTACCGCAGCCTAGCCGAAGAC
AAAATATGGGCCATCTTCGTCCAAGTCGCCCTTGGGCTGCACCATCTGCA
CTCCCGGCAGATCCTCCACCGGGACATGAAAGCTGCCAATGTCTTCATTC
ACAAAGACGAGGCCACCGGCCGACAATTCGTCAAAATCGGCGACCTGGGA
GTAGCTAAGCTCCTCACCAACAATACGTCCTTTGCCACTACCATGGTTGG
CACCCCCTACTACCTTTCCCCCGAGCTTTGCCAAAACAAACGGTACAATG
AACGCTCTGACGTCTGGTCTCTCGGCGTGCTCCTCTACCAGTGCTGCACC
CTCCGCCTGCCCTTCGATGCCTCCAACCCCATCACCCTCATGACCAAAAT
CATCAAAGGCAAATACGAGCCTGTTTCCTCCAAGTACCTCAGCCCCCATC
TCGGGGAGCTCGTCCGCACCCTCCTGACCACAGATTCGGGGCTCCGGCCT
TCCCTTAAGCAGCTGTTGAGCATTCCCTTCGTTCAGGAGAAATATGCCTT
GTCGACATACAGGGGTGGCGCTATCCCGGGAGGGAAAATACCTCCCTGCC
TTGGCTCTATCTTTGAGTGCGATTCCTCCGGAACCTGTCACAGCCATGGG
AAAAGATGAGGGGCCTTCGGGGTGGTGCATCGGGCGCGGCGGAAGCGGGA
TGGGAAGATTTACGTGATCAAGACAGTGCCTTTGACGAATTTAAAGGATT
CGGAACGGTCCGAGGCGGTGAATGAAGTGAACATTCTCGCATCAATCGCC
TCCTCGTACGTTGTCAAGTATTACGACTCCTTCGTGGAGCACGACGAGTT
GCACATCGTCATGGAGTACTGCAACCGCGGGGACCTCCAACGCATCATCT
ACAAGCTCAAAAAGGAGAAGTACCGCAGCCTAGCCGAAGACAAAATATGG
GCCATCTTCGTCCAAGTCGCCCTTGGGCTGCACCATCTGCACTCCCGGCA
GATCCTCCACCGGGACATGAAAGCTGCCAATGTCTTCATTCACAAAGACG
AGGCCACCGGCCGACAATTCGTCAAAATCGGCGACCTGGGAGTAGCTAAG
CTCCTCACCAACAATACGTCCTTTGCCACTACCATGGTTGGCACCCCCTA
CTACCTTTCCCCCGAGCTTTGCCAAAACAAACGGTACAATGAACGCTCTG
ACGTCTGGTCTCTCGGCGTGCTCCTCTACCAGTGCTGCACCCTCCGCCTG
CCCTTCGATGCCTCCAACCCCATCACCCTCATGACCAAAATCATCAAAGG
CAAATACGAGCCTGTTTCCTCCAAGTACCTCAGCCCCCATCTCGGGGAGC
TCGTCCGCACCCTCCTGACCACAGATTCGGGGCTCCGGCCTTCCCTTAAG
CAGCTGTTGAGCATTCCCTTCGTTCAGGAGAAATATGCCTTGTCGACATA
CAGGGGTGGCGCTATCCCGGGAGGGAAAATACCTCCCTGCCTTGGCTCTA
TCTTTGAGTGCGATTCCTCCGGAACCTGTCACAGCCATGGGAAAAGATGA
GGGGCCTTCGGGGTGGTGCATCGGGCGCGGCGGAAGCGGGATGGGAAGAT
TTACGTGATCAAGACAGTGCCTTTGACGAATTTAAAGGATTCGGAACGGT
CCGAGGCGGTGAATGAAGTGAACATTCTCGCATCAATCGCCTCCTCGTAC
GTTGTCAAGTATTACGACTCCTTCGTGGAGCACGACGAGTTGCACATCGT
CATGGAGTACTGCAACCGCGGGGACCTCCAACGCATCATCTACAAGCTCA
AAAAGGAGAAGTACCGCAGCCTAGCCGAAGACAAAATATGGGCCATCTTC
GTCCAAGTCGCCCTTGGGCTGCACCATCTGCACTCCCGGCAGATCCTCCA
CCGGGACATGAAAGCTGCCAATGTCTTCATTCACAAAGACGAGGCCACCG
GCCGACAATTCGTCAAAATCGGCGACCTGGGAGTAGCTAAGCTCCTCACC
AACAATACGTCCTTTGCCACTACCATGGTTGGCACCCCCTACTACCTTTC
CCCCGAGCTTTGCCAAAACAAACGGTACAATGAACGCTCTGACGTCTGGT
CTCTCGGCGTGCTCCTCTACCAGTGCTGCACCCTCCGCCTGCCCTTCGAT
GCCTCCAACCCCATCACCCTCATGACCAAAATCATCAAAGGCAAATACGA
GCCTGTTTCCTCCAAGTACCTCAGCCCCCATCTCGGGGAGCTCGTCCGCA
CCCTCCTGACCACAGATTCGGGGCTCCGGCCTTCCCTTAAGCAGCTGTTG
AGCATTCCCTTCGTTCAGGAGAAATATGCCTTGTCGACATACAGGGGTGG
CGCTATCCCGGGAGGGAAAATAC
back to top
Synonyms
Publications