jgi.p|Nanoce1779_2|610131, mRNA_10192 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610131
Unique NamemRNA_10192
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1412
Alignment locationscaffold_48:113505..114916 -

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Properties
Property NameValue
TranscriptId610217
TrackFilteredModels2
ProteinId610131
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:113505..114916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610131gene_10192Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610131mRNA_10192-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10192CDS_10192Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10192 ID=mRNA_10192|Name=jgi.p|Nanoce1779_2|610131|organism=Nannochloropsis oceanica|type=mRNA|length=1412bp
CTTGCCACCGCCGCCTCCATCCCCTCCTTTACCCTTCTCATCATCTCCTC
CCCTTTCCCCCCCATCCCTATCGCCCGCGCCTGCAAATCTGGCGCCACCT
GTACGCTCCCATCCACGGCCCGCAACATATCCACCTCCTCCTTCTCACCC
TCCATCCCTCTCTCCTCGTCATCATCCTCACCATCATCGCTGAAGGCCCT
CGCCGGCTCCGTCAAGTCCGTCGCCCGCATCTCCTCCTCCGACAACCAGA
AATACTCCTCCTGCCCCTCTTTTCCCTTCTCTTCATCATCCTCCTCCTCC
TCCTCCTGTTCCTTTTCCCCCGGCTCCATCTTTTTCTCCCCGTCCCTTCC
CTCCAGTATACTCGTCCTCATCAGCTCATCGTCCAATGCCAAGCGTAGGG
CCTCCCGCTGTTCTGGGCCGAGCATCCGCACCAGCTCCGCCTCGAGGCTT
TCCAGAGAGGAAGGGTCTTGTTTCGCAGGGCCATCGACGAAGGGAAAGCC
TGGGAGTAAAGGCTTGGAGGAGGGAGCTCCTGTTGCTGACGTGGGGGCTG
CTCGATCTTTGGCCCCCTCGCCCTCCTCCTCATCTTCCCCCTCCGCCGCT
GCCGCCGCGTCTCTCCTTCGGGGATGGGATCGCTTCGGTGCCGTTTGGCT
ATTATTTGCTGCTGCCGCTGTCTCCTTCCGCTCCTTCTTTCTCTCCATCC
TGCTCTCATCCCGTGGTGGAGGGTGGCGATACTTGTAGTCAGCTGGACCA
ATGGCTCGGACCCCTGGCTGGGCGGGCGGGAGGGCGGCTTCCAATCCGTT
CAGGTCAAACACCTCGGCCCATCGCCCCTCTCCCTCATTCTCATCATCTT
TGTCGTGGCCACGGTGATGGTGACCGCAGGATGAGGAGTGTTGGTGTTGG
TTGGCGTAAGGATTCGGGTGGCTTCTGTCGGGGTCACCAAAGGTGAAGAC
CGGGTGGAGCTTCGACGCTGTGCACCCGTCCTCCTCCACGCCCACCTCGC
CGGCCAGCAAGAATTCGTCCAACGACGGTAAGGGCCCCAAAAGAGAGGAA
AATGGGGCCGTAGAAGAAGAAGACGTCGAGGAAATGGAGGAAGCCAATGG
GATGTCTTGTCCCTCATTGTGGAGATTGTCAGCCGGAAAGAGAGGAGCGG
AAGGGGATGGAGCAGAAAGGAGGACACGGCTTGAGGGAGACCACACGGTA
GACGGCCGCTGCTGCTCGCTGTCGTCATCGTCCACGTCGCATAGAAGTGA
GGGTCGAGTGTAGATGGAGGTTGGAGGAGGCGGAAGGGCCATGATACTGG
GAGAGGAGGCACTCATGAGAGGTAGATGAGAAAGGGTCGATGGGGAGGTT
GCCCGATGTTGATTCACCACGTCCGGGGTGCCTGAGTGTGCAATCTCTGT
GGGTATGGTATC
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protein sequence of jgi.p|Nanoce1779_2|610131

>mRNA_10192-protein ID=mRNA_10192-protein|Name=jgi.p|Nanoce1779_2|610131|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MPSVGPPAVLGRASAPAPPRGFPERKGLVSQGHRRRESLGVKAWRRELLL
LTWGLLDLWPPRPPPHLPPPPLPPRLSFGDGIASVPFGYYLLLPLSPSAP
SFSPSCSHPVVEGGDTCSQLDQWLGPLAGRAGGRLPIRSGQTPRPIAPLP
HSHHLCRGHGDGDRRMRSVGVGWRKDSGGFCRGHQR*
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mRNA from alignment at scaffold_48:113505..114916-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10192 ID=mRNA_10192|Name=jgi.p|Nanoce1779_2|610131|organism=Nannochloropsis oceanica|type=mRNA|length=1412bp|location=Sequence derived from alignment at scaffold_48:113505..114916- (Nannochloropsis oceanica)
CTTGCCACCGCCGCCTCCATCCCCTCCTTTACCCTTCTCATCATCTCCTC
CCCTTTCCCCCCCATCCCTATCGCCCGCGCCTGCAAATCTGGCGCCACCT
GTACGCTCCCATCCACGGCCCGCAACATATCCACCTCCTCCTTCTCACCC
TCCATCCCTCTCTCCTCGTCATCATCCTCACCATCATCGCTGAAGGCCCT
CGCCGGCTCCGTCAAGTCCGTCGCCCGCATCTCCTCCTCCGACAACCAGA
AATACTCCTCCTGCCCCTCTTTTCCCTTCTCTTCATCATCCTCCTCCTCC
TCCTCCTGTTCCTTTTCCCCCGGCTCCATCTTTTTCTCCCCGTCCCTTCC
CTCCAGTATACTCGTCCTCATCAGCTCATCGTCCAATGCCAAGCGTAGGG
CCTCCCGCTGTTCTGGGCCGAGCATCCGCACCAGCTCCGCCTCGAGGCTT
TCCAGAGAGGAAGGGTCTTGTTTCGCAGGGCCATCGACGAAGGGAAAGCC
TGGGAGTAAAGGCTTGGAGGAGGGAGCTCCTGTTGCTGACGTGGGGGCTG
CTCGATCTTTGGCCCCCTCGCCCTCCTCCTCATCTTCCCCCTCCGCCGCT
GCCGCCGCGTCTCTCCTTCGGGGATGGGATCGCTTCGGTGCCGTTTGGCT
ATTATTTGCTGCTGCCGCTGTCTCCTTCCGCTCCTTCTTTCTCTCCATCC
TGCTCTCATCCCGTGGTGGAGGGTGGCGATACTTGTAGTCAGCTGGACCA
ATGGCTCGGACCCCTGGCTGGGCGGGCGGGAGGGCGGCTTCCAATCCGTT
CAGGTCAAACACCTCGGCCCATCGCCCCTCTCCCTCATTCTCATCATCTT
TGTCGTGGCCACGGTGATGGTGACCGCAGGATGAGGAGTGTTGGTGTTGG
TTGGCGTAAGGATTCGGGTGGCTTCTGTCGGGGTCACCAAAGGTGAAGAC
CGGGTGGAGCTTCGACGCTGTGCACCCGTCCTCCTCCACGCCCACCTCGC
CGGCCAGCAAGAATTCGTCCAACGACGGTAAGGGCCCCAAAAGAGAGGAA
AATGGGGCCGTAGAAGAAGAAGACGTCGAGGAAATGGAGGAAGCCAATGG
GATGTCTTGTCCCTCATTGTGGAGATTGTCAGCCGGAAAGAGAGGAGCGG
AAGGGGATGGAGCAGAAAGGAGGACACGGCTTGAGGGAGACCACACGGTA
GACGGCCGCTGCTGCTCGCTGTCGTCATCGTCCACGTCGCATAGAAGTGA
GGGTCGAGTGTAGATGGAGGTTGGAGGAGGCGGAAGGGCCATGATACTGG
GAGAGGAGGCACTCATGAGAGGTAGATGAGAAAGGGTCGATGGGGAGGTT
GCCCGATGTTGATTCACCACGTCCGGGGTGCCTGAGTGTGCAATCTCTGT
GGGTATGGTATC
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Coding sequence (CDS) from alignment at scaffold_48:113505..114916-

>mRNA_10192 ID=mRNA_10192|Name=jgi.p|Nanoce1779_2|610131|organism=Nannochloropsis oceanica|type=CDS|length=561bp|location=Sequence derived from alignment at scaffold_48:113505..114916- (Nannochloropsis oceanica)
ATGCCAAGCGTAGGGCCTCCCGCTGTTCTGGGCCGAGCATCCGCACCAGC
TCCGCCTCGAGGCTTTCCAGAGAGGAAGGGTCTTGTTTCGCAGGGCCATC
GACGAAGGGAAAGCCTGGGAGTAAAGGCTTGGAGGAGGGAGCTCCTGTTG
CTGACGTGGGGGCTGCTCGATCTTTGGCCCCCTCGCCCTCCTCCTCATCT
TCCCCCTCCGCCGCTGCCGCCGCGTCTCTCCTTCGGGGATGGGATCGCTT
CGGTGCCGTTTGGCTATTATTTGCTGCTGCCGCTGTCTCCTTCCGCTCCT
TCTTTCTCTCCATCCTGCTCTCATCCCGTGGTGGAGGGTGGCGATACTTG
TAGTCAGCTGGACCAATGGCTCGGACCCCTGGCTGGGCGGGCGGGAGGGC
GGCTTCCAATCCGTTCAGGTCAAACACCTCGGCCCATCGCCCCTCTCCCT
CATTCTCATCATCTTTGTCGTGGCCACGGTGATGGTGACCGCAGGATGAG
GAGTGTTGGTGTTGGTTGGCGTAAGGATTCGGGTGGCTTCTGTCGGGGTC
ACCAAAGGTGA
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Synonyms
Publications