jgi.p|Nanoce1779_2|575043, mRNA_1019 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575043
Unique NamemRNA_1019
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1309
Alignment locationscaffold_2:1028298..1029606 -

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Properties
Property NameValue
TranscriptId575129
TrackFilteredModels2
ProteinId575043
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1028298..1029606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575043gene_1019Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575043mRNA_1019-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1019CDS_1019Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1019 ID=mRNA_1019|Name=jgi.p|Nanoce1779_2|575043|organism=Nannochloropsis oceanica|type=mRNA|length=1309bp
ACAGCACGGCCATGGTGCATCGTCTCGTCCCGAAAACACACGAAGGGCAT
GTTGGTTTGCTCGTGTCTATAACCTCCCTCCAATAGAAGCCAAATGCCAC
GTCAATGAGACCGTCACGACCTCGCCGGTAAGACTCACACGAAGACGACC
TCCAATGTCATGACGACTGAAGTAAAGAAGTGGTCGTCCCGATGGAGTCA
GGAGCTAAGCTTTTGCCTGCTCCTGCTCGCAAGTATTGTAAGAGTAGACG
CTTGGCAGGAGATCAGCCCTCGCATGTCGACCTCTCTCAGTACGGACTAT
ACACCTAGGCCCTGGTGGAAGCACCCCACCGTCCCTATGACCCGTTTTGT
GGCTCGGCTTGCCTACGAGGGGACGCATTTTAATGGCTGGCAGTACCAAG
TCAAAAGCCGGACAGTCCAGCTCGAGGTGGAACGCTCCCTCAATGCCTCA
CTCGCCACCAGCCCTGCTTCCTCTCTACTTGACAAAGTTTGCATCCGTGC
TGTTGCCGCAGGGAGGACCGACGCAGGCGTGCACGCCCGGGGACAAGTCA
TCCATTTTGATTATCCCACCGTTGCTGTGACGGAGCAAAATCTCGGGGAA
TTTGAAGCAGGGCTGAATGCTCGCCTCCCTCCAGACATTCGCGTATGGAA
TATCTCTCATGCTCCTCCTCCCCGTGTGAACAATTTGGCCGCCCAAGGCG
ACTGGCATGCGATGTACAATAGTTGTGGCAAGCTCTACACGTACCGTTTC
TCCACTCGTTCAGTCGCAGATCCTTTCCAGCGACGGACACGGGTGACAGT
GCCTCGAGGGGAGGAATTAGATTTGGACAAGCTTGCGAAGATGGCAAGCA
TTTTTGAAGGCACGCATGACTACCAGAATTTTGCCAATCGTCTTTTACAC
AAACGAAGGATGAGCAAGAAGGGAGAGGAATTCACGACGAAGCGGTACGT
GGCCTCCGTACAGCTGGTGAAGGAAAGAGAGGGTGAGTATAGGTTGGATG
TCCGTCTGGACGGTGCTCTGCAGAGAATGGTAAGGAACATGATGGGGGGG
CTATGGTCGGTCGCAAGAGGGGACATGGAGGCGGATGAGTTGAGGAGAGC
GTTGGACGGTCCACTGTATCCGCCTGGGAGGAGTCCAATCCGGGCGGCGC
CTGCGCATGGGCTGACGTGTGAATGGGTGTATTACGACGATTATTGAATG
GGGATGAAGAAGGAAGGAGGGGGGGAAAGGATAGGAGGAGAAGGAATGCG
GTTGAAGATGAACGAAAGTAGATGAATAAAAAGTACAAACAAAGTAAAAG
AAGGTTGTC
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protein sequence of jgi.p|Nanoce1779_2|575043

>mRNA_1019-protein ID=mRNA_1019-protein|Name=jgi.p|Nanoce1779_2|575043|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MTTEVKKWSSRWSQELSFCLLLLASIVRVDAWQEISPRMSTSLSTDYTPR
PWWKHPTVPMTRFVARLAYEGTHFNGWQYQVKSRTVQLEVERSLNASLAT
SPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEA
GLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMYNSCGKLYTYRFSTR
SVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRR
MSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWS
VARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDDY*
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mRNA from alignment at scaffold_2:1028298..1029606-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1019 ID=mRNA_1019|Name=jgi.p|Nanoce1779_2|575043|organism=Nannochloropsis oceanica|type=mRNA|length=1309bp|location=Sequence derived from alignment at scaffold_2:1028298..1029606- (Nannochloropsis oceanica)
ACAGCACGGCCATGGTGCATCGTCTCGTCCCGAAAACACACGAAGGGCAT
GTTGGTTTGCTCGTGTCTATAACCTCCCTCCAATAGAAGCCAAATGCCAC
GTCAATGAGACCGTCACGACCTCGCCGGTAAGACTCACACGAAGACGACC
TCCAATGTCATGACGACTGAAGTAAAGAAGTGGTCGTCCCGATGGAGTCA
GGAGCTAAGCTTTTGCCTGCTCCTGCTCGCAAGTATTGTAAGAGTAGACG
CTTGGCAGGAGATCAGCCCTCGCATGTCGACCTCTCTCAGTACGGACTAT
ACACCTAGGCCCTGGTGGAAGCACCCCACCGTCCCTATGACCCGTTTTGT
GGCTCGGCTTGCCTACGAGGGGACGCATTTTAATGGCTGGCAGTACCAAG
TCAAAAGCCGGACAGTCCAGCTCGAGGTGGAACGCTCCCTCAATGCCTCA
CTCGCCACCAGCCCTGCTTCCTCTCTACTTGACAAAGTTTGCATCCGTGC
TGTTGCCGCAGGGAGGACCGACGCAGGCGTGCACGCCCGGGGACAAGTCA
TCCATTTTGATTATCCCACCGTTGCTGTGACGGAGCAAAATCTCGGGGAA
TTTGAAGCAGGGCTGAATGCTCGCCTCCCTCCAGACATTCGCGTATGGAA
TATCTCTCATGCTCCTCCTCCCCGTGTGAACAATTTGGCCGCCCAAGGCG
ACTGGCATGCGATGTACAATAGTTGTGGCAAGCTCTACACGTACCGTTTC
TCCACTCGTTCAGTCGCAGATCCTTTCCAGCGACGGACACGGGTGACAGT
GCCTCGAGGGGAGGAATTAGATTTGGACAAGCTTGCGAAGATGGCAAGCA
TTTTTGAAGGCACGCATGACTACCAGAATTTTGCCAATCGTCTTTTACAC
AAACGAAGGATGAGCAAGAAGGGAGAGGAATTCACGACGAAGCGGTACGT
GGCCTCCGTACAGCTGGTGAAGGAAAGAGAGGGTGAGTATAGGTTGGATG
TCCGTCTGGACGGTGCTCTGCAGAGAATGGTAAGGAACATGATGGGGGGG
CTATGGTCGGTCGCAAGAGGGGACATGGAGGCGGATGAGTTGAGGAGAGC
GTTGGACGGTCCACTGTATCCGCCTGGGAGGAGTCCAATCCGGGCGGCGC
CTGCGCATGGGCTGACGTGTGAATGGGTGTATTACGACGATTATTGAATG
GGGATGAAGAAGGAAGGAGGGGGGGAAAGGATAGGAGGAGAAGGAATGCG
GTTGAAGATGAACGAAAGTAGATGAATAAAAAGTACAAACAAAGTAAAAG
AAGGTTGTC
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Coding sequence (CDS) from alignment at scaffold_2:1028298..1029606-

>mRNA_1019 ID=mRNA_1019|Name=jgi.p|Nanoce1779_2|575043|organism=Nannochloropsis oceanica|type=CDS|length=1038bp|location=Sequence derived from alignment at scaffold_2:1028298..1029606- (Nannochloropsis oceanica)
ATGACGACTGAAGTAAAGAAGTGGTCGTCCCGATGGAGTCAGGAGCTAAG
CTTTTGCCTGCTCCTGCTCGCAAGTATTGTAAGAGTAGACGCTTGGCAGG
AGATCAGCCCTCGCATGTCGACCTCTCTCAGTACGGACTATACACCTAGG
CCCTGGTGGAAGCACCCCACCGTCCCTATGACCCGTTTTGTGGCTCGGCT
TGCCTACGAGGGGACGCATTTTAATGGCTGGCAGTACCAAGTCAAAAGCC
GGACAGTCCAGCTCGAGGTGGAACGCTCCCTCAATGCCTCACTCGCCACC
AGCCCTGCTTCCTCTCTACTTGACAAAGTTTGCATCCGTGCTGTTGCCGC
AGGGAGGACCGACGCAGGCGTGCACGCCCGGGGACAAGTCATCCATTTTG
ATTATCCCACCGTTGCTGTGACGGAGCAAAATCTCGGGGAATTTGAAGCA
GGGCTGAATGCTCGCCTCCCTCCAGACATTCGCGTATGGAATATCTCTCA
TGCTCCTCCTCCCCGTGTGAACAATTTGGCCGCCCAAGGCGACTGGCATG
CGATGTACAATAGTTGTGGCAAGCTCTACACGTACCGTTTCTCCACTCGT
TCAGTCGCAGATCCTTTCCAGCGACGGACACGGGTGACAGTGCCTCGAGG
GGAGGAATTAGATTTGGACAAGCTTGCGAAGATGGCAAGCATTTTTGAAG
GCACGCATGACTACCAGAATTTTGCCAATCGTCTTTTACACAAACGAAGG
ATGAGCAAGAAGGGAGAGGAATTCACGACGAAGCGGTACGTGGCCTCCGT
ACAGCTGGTGAAGGAAAGAGAGGGTGAGTATAGGTTGGATGTCCGTCTGG
ACGGTGCTCTGCAGAGAATGGTAAGGAACATGATGGGGGGGCTATGGTCG
GTCGCAAGAGGGGACATGGAGGCGGATGAGTTGAGGAGAGCGTTGGACGG
TCCACTGTATCCGCCTGGGAGGAGTCCAATCCGGGCGGCGCCTGCGCATG
GGCTGACGTGTGAATGGGTGTATTACGACGATTATTGA
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Synonyms
Publications