jgi.p|Nanoce1779_2|569658, mRNA_10189 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|569658
Unique NamemRNA_10189
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length522
Alignment locationscaffold_48:107516..108037 -

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Properties
Property NameValue
TranscriptId569744
TrackFilteredModels2
ProteinId569658
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:107516..108037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|569658gene_10189Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10189CDS_10189Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|569658mRNA_10189-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10189 ID=mRNA_10189|Name=jgi.p|Nanoce1779_2|569658|organism=Nannochloropsis oceanica|type=mRNA|length=522bp
ATGATACCCACGCCAAAAAAGATTACGGAGGAGCGAGAAAATCTAACGAA
GAAGACGGACCAGGGGGCGTTAGGGTCTGTGGGGGACTTTCTGTGGGGCA
GTGGGGGAGGCAAGACGCAGGGAATTAACGGAAACGAGGTGAGGGAGAGG
GAAGAGGAAGGGATTGAGAAGAAGCAGAGGGTGTGGGGCAGTCGAAGCAA
AAATCACGATGTTGTGAATATGGAAGAGATGGAAGAAGAAAGAGCGGCAG
GGACGGTTGCGGCGAAGGAAGATGCGGGAGCGTCGGCGGTCGAAAGGGAG
GGTACGGAGGCACAAGAGAGGGAGGTAAGTGGGCTCGAGGATAATATTTC
CATAGGCTCCAAAAGGATGAAAATAGGACATCCTGCCATACGTGTGGAGG
AAAGGGGGCAGAAGGGGGAGGAAGAGACGCACGAGTCTATCGACAAGAAA
TTGCGGCAGCAGCAGGGCAAAGGCGTTGAGGCGGAAGGCCAGGTACCGCC
GTCCAAGAAGTTGTTCTCGTAA
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protein sequence of jgi.p|Nanoce1779_2|569658

>mRNA_10189-protein ID=mRNA_10189-protein|Name=jgi.p|Nanoce1779_2|569658|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MIPTPKKITEERENLTKKTDQGALGSVGDFLWGSGGGKTQGINGNEVRER
EEEGIEKKQRVWGSRSKNHDVVNMEEMEEERAAGTVAAKEDAGASAVERE
GTEAQEREVSGLEDNISIGSKRMKIGHPAIRVEERGQKGEEETHESIDKK
LRQQQGKGVEAEGQVPPSKKLFS*
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mRNA from alignment at scaffold_48:107516..108037-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10189 ID=mRNA_10189|Name=jgi.p|Nanoce1779_2|569658|organism=Nannochloropsis oceanica|type=mRNA|length=522bp|location=Sequence derived from alignment at scaffold_48:107516..108037- (Nannochloropsis oceanica)
ATGATACCCACGCCAAAAAAGATTACGGAGGAGCGAGAAAATCTAACGAA
GAAGACGGACCAGGGGGCGTTAGGGTCTGTGGGGGACTTTCTGTGGGGCA
GTGGGGGAGGCAAGACGCAGGGAATTAACGGAAACGAGGTGAGGGAGAGG
GAAGAGGAAGGGATTGAGAAGAAGCAGAGGGTGTGGGGCAGTCGAAGCAA
AAATCACGATGTTGTGAATATGGAAGAGATGGAAGAAGAAAGAGCGGCAG
GGACGGTTGCGGCGAAGGAAGATGCGGGAGCGTCGGCGGTCGAAAGGGAG
GGTACGGAGGCACAAGAGAGGGAGGTAAGTGGGCTCGAGGATAATATTTC
CATAGGCTCCAAAAGGATGAAAATAGGACATCCTGCCATACGTGTGGAGG
AAAGGGGGCAGAAGGGGGAGGAAGAGACGCACGAGTCTATCGACAAGAAA
TTGCGGCAGCAGCAGGGCAAAGGCGTTGAGGCGGAAGGCCAGGTACCGCC
GTCCAAGAAGTTGTTCTCGTAA
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Coding sequence (CDS) from alignment at scaffold_48:107516..108037-

>mRNA_10189 ID=mRNA_10189|Name=jgi.p|Nanoce1779_2|569658|organism=Nannochloropsis oceanica|type=CDS|length=522bp|location=Sequence derived from alignment at scaffold_48:107516..108037- (Nannochloropsis oceanica)
ATGATACCCACGCCAAAAAAGATTACGGAGGAGCGAGAAAATCTAACGAA
GAAGACGGACCAGGGGGCGTTAGGGTCTGTGGGGGACTTTCTGTGGGGCA
GTGGGGGAGGCAAGACGCAGGGAATTAACGGAAACGAGGTGAGGGAGAGG
GAAGAGGAAGGGATTGAGAAGAAGCAGAGGGTGTGGGGCAGTCGAAGCAA
AAATCACGATGTTGTGAATATGGAAGAGATGGAAGAAGAAAGAGCGGCAG
GGACGGTTGCGGCGAAGGAAGATGCGGGAGCGTCGGCGGTCGAAAGGGAG
GGTACGGAGGCACAAGAGAGGGAGGTAAGTGGGCTCGAGGATAATATTTC
CATAGGCTCCAAAAGGATGAAAATAGGACATCCTGCCATACGTGTGGAGG
AAAGGGGGCAGAAGGGGGAGGAAGAGACGCACGAGTCTATCGACAAGAAA
TTGCGGCAGCAGCAGGGCAAAGGCGTTGAGGCGGAAGGCCAGGTACCGCC
GTCCAAGAAGTTGTTCTCGTAA
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Synonyms
Publications