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Properties
| Property Name | Value |
|---|
| TranscriptId | 610196 |
| Track | FilteredModels2 |
| ProteinId | 610110 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_48 | supercontig | scaffold_48:100315..103236 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10187 ID=mRNA_10187|Name=jgi.p|Nanoce1779_2|610110|organism=Nannochloropsis oceanica|type=mRNA|length=1710bp
AAGACAGCGAGCGTTTTTTTCTGGGTTATTCCACGAAAGGGTCTCGAAAC
CACATGGCGCTCTGTTTTTTGTCTCCCTTCCCATTGTTACTGGTCGTCTT
TGACTTTAAAAAAAATATGTATGATCGCTGACCCTGACCCACCGTCCGCA
ACCAAACAAGCAGAGCTACTCAAGCCGCTAAGCATCTATACCATGGCACC
CCCTTCCTTCAAGCCCTTCGGTGATGACGGTACCTACGTTGCCGGTACGT
AGACAAGACATGGCAGTGTGACAGTGGGTCACGCAGTGACAATTGTCGAC
CTTTGTCCTTTCCACTTGATTTCTATTCTCTCCCTCCTCGTCTCACAACA
GGAGCCCTGTCCGAAGCCGACATTCAAGAGCTCGTCCCGCGCTTCTCTGG
GTGGCTTTACCTCTGCACTGATTCGGGACCTGACAGCGGCGTTCCCGGGG
GCTTTCCCAGCATTGTCAAAGGACATGAGGGGGGTAAGCATGTTCACGTC
CCGGTCAACCACTCCGACCTGGACCTGGCCTTGACCCGCCGCCTGTTTAA
AGCACGCGCTACACTTGTCGGTCCTGCTCCTTCTACTACCGGCCCCCTTT
TTATCACCTGCCGATCCAATGCGCGGGCCGGGGCCGTGGCCTTGCTGTAC
TATGCACAGGACAAGAAAATTGAGGCTGCCAGCGCCCCTTCTCCCGAAGA
TATTATCGAATGGGGAAGGAAGCAGGGCCTTTCTTTCTTCAGCAACGCGG
CGCTGGTGGATTGGGTGATGGCTTCGTTGTATTTCATTTTAAAGGGACCC
GAGGAACGCCCGAGGCCTCTATTTCATCAGCTTTTTGAGCCGGAGTCGTC
TACGTATACTTACTTGCTGGCAGACCCGGAGAGCAAGGAAGCCATTCTGA
TCGATCCCGTAGACCTGATGGTGGAAAGGGACGTGAAGCTCGTGAAGGAG
CTTGGCTTAACCTGTCTGTTTGGGGTCAACACGCACTGTCACGCCGACCA
CGTCACTGGCACGCACCTCCTGAAGCAGCAGATCCCGGGGTTGAAGAGCG
TCATCGCCAGGACGTCCGAAGCCAAGGCAGATGTGCTGAAGGAGGACAAG
GAGAAGATCAGGTTCGGGCAATACTATTTGGAGTTTCGCGCCACGCCGGG
GCACACGAGTGGCTGTATGTCTCTGGTCATGGACGATCGCTCTATGGTCT
TTACAGGAGATGCCCTTCTCATCCGCGGCTGTGGTCGGACAGACTTCCAG
CAGGGTGATGCCCACATGCTCTTCCAATCCGTCCACTCGCGTCTCTTCAC
GCTACCCGGAGATTGCGTGGTGTATCCGGCTCACGACTACCACGGGCGGA
TGTCCTCCAGCATCCGGGAGGAGAAGCAACACAACCCCCGCCTGTCCAAG
TCGGAAGAAGAGTTTGTGACGCTGATGAAGAATCTTAACCTTCCCTATCC
CAAGAAGATCGACGAGGCCTTACCTCGGAATCTGGTCTGCGGGTGCTGAG
CAGCCGCCTGGCCGTTCCTCCCTCCCTCCCTCCCTCACTCCCTCCCTCCT
TCCCTCCCTCCCATTCTCCTCCCATAGGGAGGGAGGGGTTTGGAGTCTGG
AAAGGAAGAGAGGGAGCGAGGCAAGAGGGGAGGGAGAGGAGGGGGGTGGG
ATGGGGGAATCAGCCCGGGTTTCTCACTGAATCACTGAGCAGGGGGCGGG
GGGAGGGGGG back to topprotein sequence of jgi.p|Nanoce1779_2|610110 >mRNA_10187-protein ID=mRNA_10187-protein|Name=jgi.p|Nanoce1779_2|610110|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MASLYFILKGPEERPRPLFHQLFEPESSTYTYLLADPESKEAILIDPVDL
MVERDVKLVKELGLTCLFGVNTHCHADHVTGTHLLKQQIPGLKSVIARTS
EAKADVLKEDKEKIRFGQYYLEFRATPGHTSGCMSLVMDDRSMVFTGDAL
LIRGCGRTDFQQGDAHMLFQSVHSRLFTLPGDCVVYPAHDYHGRMSSSIR
EEKQHNPRLSKSEEEFVTLMKNLNLPYPKKIDEALPRNLVCGC* back to topmRNA from alignment at scaffold_48:100315..103236- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10187 ID=mRNA_10187|Name=jgi.p|Nanoce1779_2|610110|organism=Nannochloropsis oceanica|type=mRNA|length=2922bp|location=Sequence derived from alignment at scaffold_48:100315..103236- (Nannochloropsis oceanica)
AAGACAGCGAGCGTTTTTTTCTGGGTTATTCCACGAAAGGGTCTCGAAAC
CACATGGCGCTCTGTTTTTTGTCTCCCTTCCCATTGTTACTGGTCGTCTT
TGACTTTAAAAAAAATATGTATGATCGCTGACCCTGACCCACCGTCCGCA
ACCAAACAAGCAGAGCTACTCAAGCCGCTAAGCATCTATACCATGGCACC
CCCTTCCTTCAAGCCCTTCGGTGATGACGGTACCTACGTTGCCGGTACGT
AGACAAGACATGGCAGTGTGACAGTGGGTCACGCAGTGACAATTGTCGAC
CTTTGTCCTTTCCACTTGATTTCTATTCTCTCCCTCCTCGTCTCACAACA
GGAGCCCTGTCCGAAGCCGACATTCAAGAGCTCGTCCCGCGCTTCTCTGG
GTGGCTTTACCTCTGCACTGATTCGGGACCTGACAGCGGCGTTCCCGGGG
GCTTTCCCAGCATTGTCAAAGGACATGAGGGGGGTAAGCATGTTCACGTC
CCGGTCAACCACTCCGACCTGGACCTGGCCTTGACCCGCCGCCTGTTTAA
AGCACGCGCTACACTTGTCGGTCCTGCTCCTTCTACTACCGGCCCCCTTT
TTATCACCTGCCGATCCAATGCGCGGGCCGGGGCCGTGGCCTTGCTGTAC
TATGCACAGGACAAGAAAATTGAGGCTGCCAGCGCCCCTTCTCCCGAAGA
TATTATCGAATGGGGAAGGAAGCAGGGCCTTTCTTTCTTCAGCAACGCGG
CGCTGGTGGATTGGGTGATGGCTTCGTTGTATTTCATTTTAAAGGGACCC
GAGGAACGCCCGAGGCCTCTATTTCATCAGCTTTTTGAGCCGGAGTCGTC
TACGTATACTTACTTGCTGGCAGACCCGGAGAGTGAGTGGGAGGAGAAGT
GGCAGGAGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGGGAGAA
GAGGTGGAGGTGTGCATGACGGTCTTGGTTGCATGTCCCATACTCATATT
TCTATCCTTTTTCCCTCTGTCCCTTGCCAGGCAAGGAAGCCATTCTGATC
GATCCCGTAGACCTGATGGTGGAAAGGGACGTGAAGCTCGTGAAGGAGCT
TGGCTTAACCTGTCTGTTTGGGGTCAACACGCACTGTCACGCCGACCACG
TCACTGGTAGGGTGGGAGGGGAGGGAGGGAAAGAAGAATGATTGAAAGAG
GGCGATCCGAGCAGTAGTGATGCTTGGCGGGCTGATTCTTGTACCCTCTT
CTGTTCTCCCCCCCCCTCTCCCTCCCCTTTTACTCTCTCTCTCTCTTGGT
GTTTCTCGTTCTCTTCCTTTCGTCGCCCTCGTTTTCTCTCATTTCGACGT
GCTGTTACCCTCCCTCCCTCCTCAGGCACGCACCTCCTGAAGCAGCAGAT
CCCGGGGTTGAAGAGCGTCATCGCCAGGACGTCCGAAGCCAAGGCAGATG
TGCTGAAGGAGGACAAGGAGAAGATCAGGTAGGGAGGGAGGGAGGGAAGG
AGGAAGGGAGAGTAGAATGAGCATTCTGTAGTCCATACATGCATACATGA
GTACCTGCTCCCTTAAATCAATGGGCTTCACTCACCCCTCCCTCCCGCCC
TCTCTCCCTCCCTCCCATCCAGGTTCGGGCAATACTATTTGGAGTTTCGC
GCCACGCCGGGGCACACGAGTGGCTGTATGTCTCTGGTCATGGACGATCG
CTCTATGGTCTTTACAGGAGATGTGCGTAGGGCGGGAGGGTGACCTTTGT
TCCTGATTGCAAGGAAGACTCAAGCTCGTTTGGGTAGTCGTGGTGTGTCT
AGTACTCATCTCCTTCCCTCCCTACCTCCTTCCCTACCTCCCTCCTTCTT
TCCTCAGGCCCTTCTCATCCGCGGCTGTGGTCGGACAGACTTCCAGCAGG
GTGATGCCCACATGCTCTTCCAATCCGTCCACTCGCGTCTCTTCACGCTA
CCCGGAGATTGCGTGGTGAGGGCGGGAGGGAGGGAGGGAGGGACGGCGGG
AGGGAGGGACGGCGGGAGGGAGGGAGGGGTTAGCAGAGCAACGATAGGGC
GGGTAATCGCCTACGCGGAGACAAGAAGAGCTCGCTGAGGATTCTAATCT
CTCCCTCCCTCCCTCCCTCCCTCCCTCTTCCATGTAGGTGTATCCGGCTC
ACGACTACCACGGGCGGATGTCCTCCAGCATCCGGGAGGAGAAGCAACAC
AACCCCCGCCTGTCCAAGGTAATAAATTACCCACCAATATAAATATATAT
TTATATATAATTTATTACCCACCAACATTAATGTTTATATATAGATATAA
ATACACGTAATTACCCACCAGTGGAATTTTGTGCATGTATAGATTTATAG
ATACGTAATTACCCACCCATGGAAATATATGTATATAATTACCCACCAAT
GGAGATATATGTATATGTGGGTGGAGAGAGAGATATGCGTGAATAGTATA
AAGGGGGAAGGCTCATTTACCAACCATACAGATAGCTGAGAAGGAAGACT
AGAGAGAGAGAAAGGGGGCCGCACCTCCGCCTGCCTCGTTGCAATCGCTA
ACCACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCCCGCCTGCAGTCGGAAGAAGAGTTTGTGACGCTGATGAAGAATCTTAA
CCTTCCCTATCCCAAGAAGATCGACGAGGCCTTACCTCGGAATCTGGTCT
GCGGGTGCTGAGCAGCCGCCTGGCCGTTCCTCCCTCCCTCCCTCCCTCAC
TCCCTCCCTCCTTCCCTCCCTCCCATTCTCCTCCCATAGGGAGGGAGGGG
TTTGGAGTCTGGAAAGGAAGAGAGGGAGCGAGGCAAGAGGGGAGGGAGAG
GAGGGGGGTGGGATGGGGGAATCAGCCCGGGTTTCTCACTGAATCACTGA
GCAGGGGGCGGGGGGAGGGGGG back to topCoding sequence (CDS) from alignment at scaffold_48:100315..103236- >mRNA_10187 ID=mRNA_10187|Name=jgi.p|Nanoce1779_2|610110|organism=Nannochloropsis oceanica|type=CDS|length=5124bp|location=Sequence derived from alignment at scaffold_48:100315..103236- (Nannochloropsis oceanica)
TCGGAAGAAGAGTTTGTGACGCTGATGAAGAATCTTAACCTTCCCTATCC
CAAGAAGATCGACGAGGCCTTACCTCGGAATCTGGTCTGCGGGTGCTGAG
TGTATCCGGCTCACGACTACCACGGGCGGATGTCCTCCAGCATCCGGGAG
GAGAAGCAACACAACCCCCGCCTGTCCAAGGCCCTTCTCATCCGCGGCTG
TGGTCGGACAGACTTCCAGCAGGGTGATGCCCACATGCTCTTCCAATCCG
TCCACTCGCGTCTCTTCACGCTACCCGGAGATTGCGTGGTTCGGGCAATA
CTATTTGGAGTTTCGCGCCACGCCGGGGCACACGAGTGGCTGTATGTCTC
TGGTCATGGACGATCGCTCTATGGTCTTTACAGGAGATGCACGCACCTCC
TGAAGCAGCAGATCCCGGGGTTGAAGAGCGTCATCGCCAGGACGTCCGAA
GCCAAGGCAGATGTGCTGAAGGAGGACAAGGAGAAGATCAGGCAAGGAAG
CCATTCTGATCGATCCCGTAGACCTGATGGTGGAAAGGGACGTGAAGCTC
GTGAAGGAGCTTGGCTTAACCTGTCTGTTTGGGGTCAACACGCACTGTCA
CGCCGACCACGTCACTGATGGCTTCGTTGTATTTCATTTTAAAGGGACCC
GAGGAACGCCCGAGGCCTCTATTTCATCAGCTTTTTGAGCCGGAGTCGTC
TACGTATACTTACTTGCTGGCAGACCCGGAGATCGGAAGAAGAGTTTGTG
ACGCTGATGAAGAATCTTAACCTTCCCTATCCCAAGAAGATCGACGAGGC
CTTACCTCGGAATCTGGTCTGCGGGTGCTGAGTGTATCCGGCTCACGACT
ACCACGGGCGGATGTCCTCCAGCATCCGGGAGGAGAAGCAACACAACCCC
CGCCTGTCCAAGGCCCTTCTCATCCGCGGCTGTGGTCGGACAGACTTCCA
GCAGGGTGATGCCCACATGCTCTTCCAATCCGTCCACTCGCGTCTCTTCA
CGCTACCCGGAGATTGCGTGGTTCGGGCAATACTATTTGGAGTTTCGCGC
CACGCCGGGGCACACGAGTGGCTGTATGTCTCTGGTCATGGACGATCGCT
CTATGGTCTTTACAGGAGATGCACGCACCTCCTGAAGCAGCAGATCCCGG
GGTTGAAGAGCGTCATCGCCAGGACGTCCGAAGCCAAGGCAGATGTGCTG
AAGGAGGACAAGGAGAAGATCAGGCAAGGAAGCCATTCTGATCGATCCCG
TAGACCTGATGGTGGAAAGGGACGTGAAGCTCGTGAAGGAGCTTGGCTTA
ACCTGTCTGTTTGGGGTCAACACGCACTGTCACGCCGACCACGTCACTGA
TGGCTTCGTTGTATTTCATTTTAAAGGGACCCGAGGAACGCCCGAGGCCT
CTATTTCATCAGCTTTTTGAGCCGGAGTCGTCTACGTATACTTACTTGCT
GGCAGACCCGGAGATCGGAAGAAGAGTTTGTGACGCTGATGAAGAATCTT
AACCTTCCCTATCCCAAGAAGATCGACGAGGCCTTACCTCGGAATCTGGT
CTGCGGGTGCTGAGTGTATCCGGCTCACGACTACCACGGGCGGATGTCCT
CCAGCATCCGGGAGGAGAAGCAACACAACCCCCGCCTGTCCAAGGCCCTT
CTCATCCGCGGCTGTGGTCGGACAGACTTCCAGCAGGGTGATGCCCACAT
GCTCTTCCAATCCGTCCACTCGCGTCTCTTCACGCTACCCGGAGATTGCG
TGGTTCGGGCAATACTATTTGGAGTTTCGCGCCACGCCGGGGCACACGAG
TGGCTGTATGTCTCTGGTCATGGACGATCGCTCTATGGTCTTTACAGGAG
ATGCACGCACCTCCTGAAGCAGCAGATCCCGGGGTTGAAGAGCGTCATCG
CCAGGACGTCCGAAGCCAAGGCAGATGTGCTGAAGGAGGACAAGGAGAAG
ATCAGGCAAGGAAGCCATTCTGATCGATCCCGTAGACCTGATGGTGGAAA
GGGACGTGAAGCTCGTGAAGGAGCTTGGCTTAACCTGTCTGTTTGGGGTC
AACACGCACTGTCACGCCGACCACGTCACTGATGGCTTCGTTGTATTTCA
TTTTAAAGGGACCCGAGGAACGCCCGAGGCCTCTATTTCATCAGCTTTTT
GAGCCGGAGTCGTCTACGTATACTTACTTGCTGGCAGACCCGGAGATCGG
AAGAAGAGTTTGTGACGCTGATGAAGAATCTTAACCTTCCCTATCCCAAG
AAGATCGACGAGGCCTTACCTCGGAATCTGGTCTGCGGGTGCTGAGTGTA
TCCGGCTCACGACTACCACGGGCGGATGTCCTCCAGCATCCGGGAGGAGA
AGCAACACAACCCCCGCCTGTCCAAGGCCCTTCTCATCCGCGGCTGTGGT
CGGACAGACTTCCAGCAGGGTGATGCCCACATGCTCTTCCAATCCGTCCA
CTCGCGTCTCTTCACGCTACCCGGAGATTGCGTGGTTCGGGCAATACTAT
TTGGAGTTTCGCGCCACGCCGGGGCACACGAGTGGCTGTATGTCTCTGGT
CATGGACGATCGCTCTATGGTCTTTACAGGAGATGCACGCACCTCCTGAA
GCAGCAGATCCCGGGGTTGAAGAGCGTCATCGCCAGGACGTCCGAAGCCA
AGGCAGATGTGCTGAAGGAGGACAAGGAGAAGATCAGGCAAGGAAGCCAT
TCTGATCGATCCCGTAGACCTGATGGTGGAAAGGGACGTGAAGCTCGTGA
AGGAGCTTGGCTTAACCTGTCTGTTTGGGGTCAACACGCACTGTCACGCC
GACCACGTCACTGATGGCTTCGTTGTATTTCATTTTAAAGGGACCCGAGG
AACGCCCGAGGCCTCTATTTCATCAGCTTTTTGAGCCGGAGTCGTCTACG
TATACTTACTTGCTGGCAGACCCGGAGATCGGAAGAAGAGTTTGTGACGC
TGATGAAGAATCTTAACCTTCCCTATCCCAAGAAGATCGACGAGGCCTTA
CCTCGGAATCTGGTCTGCGGGTGCTGAGTGTATCCGGCTCACGACTACCA
CGGGCGGATGTCCTCCAGCATCCGGGAGGAGAAGCAACACAACCCCCGCC
TGTCCAAGGCCCTTCTCATCCGCGGCTGTGGTCGGACAGACTTCCAGCAG
GGTGATGCCCACATGCTCTTCCAATCCGTCCACTCGCGTCTCTTCACGCT
ACCCGGAGATTGCGTGGTTCGGGCAATACTATTTGGAGTTTCGCGCCACG
CCGGGGCACACGAGTGGCTGTATGTCTCTGGTCATGGACGATCGCTCTAT
GGTCTTTACAGGAGATGCACGCACCTCCTGAAGCAGCAGATCCCGGGGTT
GAAGAGCGTCATCGCCAGGACGTCCGAAGCCAAGGCAGATGTGCTGAAGG
AGGACAAGGAGAAGATCAGGCAAGGAAGCCATTCTGATCGATCCCGTAGA
CCTGATGGTGGAAAGGGACGTGAAGCTCGTGAAGGAGCTTGGCTTAACCT
GTCTGTTTGGGGTCAACACGCACTGTCACGCCGACCACGTCACTGATGGC
TTCGTTGTATTTCATTTTAAAGGGACCCGAGGAACGCCCGAGGCCTCTAT
TTCATCAGCTTTTTGAGCCGGAGTCGTCTACGTATACTTACTTGCTGGCA
GACCCGGAGATCGGAAGAAGAGTTTGTGACGCTGATGAAGAATCTTAACC
TTCCCTATCCCAAGAAGATCGACGAGGCCTTACCTCGGAATCTGGTCTGC
GGGTGCTGAGTGTATCCGGCTCACGACTACCACGGGCGGATGTCCTCCAG
CATCCGGGAGGAGAAGCAACACAACCCCCGCCTGTCCAAGGCCCTTCTCA
TCCGCGGCTGTGGTCGGACAGACTTCCAGCAGGGTGATGCCCACATGCTC
TTCCAATCCGTCCACTCGCGTCTCTTCACGCTACCCGGAGATTGCGTGGT
TCGGGCAATACTATTTGGAGTTTCGCGCCACGCCGGGGCACACGAGTGGC
TGTATGTCTCTGGTCATGGACGATCGCTCTATGGTCTTTACAGGAGATGC
ACGCACCTCCTGAAGCAGCAGATCCCGGGGTTGAAGAGCGTCATCGCCAG
GACGTCCGAAGCCAAGGCAGATGTGCTGAAGGAGGACAAGGAGAAGATCA
GGCAAGGAAGCCATTCTGATCGATCCCGTAGACCTGATGGTGGAAAGGGA
CGTGAAGCTCGTGAAGGAGCTTGGCTTAACCTGTCTGTTTGGGGTCAACA
CGCACTGTCACGCCGACCACGTCACTGATGGCTTCGTTGTATTTCATTTT
AAAGGGACCCGAGGAACGCCCGAGGCCTCTATTTCATCAGCTTTTTGAGC
CGGAGTCGTCTACGTATACTTACTTGCTGGCAGACCCGGAGATCGGAAGA
AGAGTTTGTGACGCTGATGAAGAATCTTAACCTTCCCTATCCCAAGAAGA
TCGACGAGGCCTTACCTCGGAATCTGGTCTGCGGGTGCTGAGTGTATCCG
GCTCACGACTACCACGGGCGGATGTCCTCCAGCATCCGGGAGGAGAAGCA
ACACAACCCCCGCCTGTCCAAGGCCCTTCTCATCCGCGGCTGTGGTCGGA
CAGACTTCCAGCAGGGTGATGCCCACATGCTCTTCCAATCCGTCCACTCG
CGTCTCTTCACGCTACCCGGAGATTGCGTGGTTCGGGCAATACTATTTGG
AGTTTCGCGCCACGCCGGGGCACACGAGTGGCTGTATGTCTCTGGTCATG
GACGATCGCTCTATGGTCTTTACAGGAGATGCACGCACCTCCTGAAGCAG
CAGATCCCGGGGTTGAAGAGCGTCATCGCCAGGACGTCCGAAGCCAAGGC
AGATGTGCTGAAGGAGGACAAGGAGAAGATCAGGCAAGGAAGCCATTCTG
ATCGATCCCGTAGACCTGATGGTGGAAAGGGACGTGAAGCTCGTGAAGGA
GCTTGGCTTAACCTGTCTGTTTGGGGTCAACACGCACTGTCACGCCGACC
ACGTCACTGATGGCTTCGTTGTATTTCATTTTAAAGGGACCCGAGGAACG
CCCGAGGCCTCTATTTCATCAGCTTTTTGAGCCGGAGTCGTCTACGTATA
CTTACTTGCTGGCAGACCCGGAGA back to top
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