jgi.p|Nanoce1779_2|610099, mRNA_10185 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|610099
Unique Name	mRNA_10185
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2010
Alignment location	scaffold_48:93754..96071 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	610185
Track	FilteredModels2
ProteinId	610099

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_48	supercontig	scaffold_48:93754..96071 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610099	gene_10185	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610099	mRNA_10185-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10185	CDS_10185	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_48:93754..96071+
coding sequence from alignment at scaffold_48:93754..96071+

mRNA sequence

>mRNA_10185 ID=mRNA_10185|Name=jgi.p|Nanoce1779_2|610099|organism=Nannochloropsis oceanica|type=mRNA|length=2010bp
ACAGCCACCACCACCAACCACCACCCTCTCAACAACAATGATGAAGTCTA
TCGCTTTCCTCTTGGCTTTCGCCTCCTCCGCTTCTGCTTTCAGTGGGCAG
GTAAGCACGACAAGTAGTGGTGGCACTACGGGCGGGACGGGAGGGGAAAG
ATCTACAGCTACACGTATGCTGAATCAGAGCCACACCTGGACCCACCTCT
CCTTTGTCTCCCTTTTCACCTATTCTCCCCTCTCACACCTCACCCGCAAC
AAGCTGCTCGCGAGAGTGTGCGAAAGTGTACATATCCCATCTCCGCCCTG
GCGGCCACCACCGCCCGTCCACCCGTACCCACTTACAACCACGTGTTTCA
CATATCTTCCCTGTCCCTCTTCCCTCATTCCATTCCCAGCCCACCTCTTC
TCGCGCACGCATAACCACTCACGGCTTCACCCCTTCCCCTCCCGACGCTC
TTTGACAGCCATCCCCACTTGTCGGCTACATACATAGCGAGGCCATACCA
CAGCGAACCCGACGTACCTAGCTACAATCCCACACCACACACACCCAGAC
ATCCACAAACTCACATCCACACACACCTCTCTCCTAATCTCGCACACCTT
CCACATCCTACACATCGCCACCCCTCCTTACCCTCCCACCCTTCCTCACC
GTTTCCTTTTTCCCACAGTCGACATTCTACGGCGCGGGCGGCGCCGGTCA
GGGCGGTGCCTGTATGCTTCCGCGAGGGTTTAATGGCGTGGGTGTAACTG
TGGCCATGAACCAGGCTCAGTATGAAGGCTCCTGCGGCAAGTGTATCAAG
CTGACTGGCCAGGGTGACGGCTTGGGTGGCACCCCTGTGATCGGGCCCAT
CTTCGCGACCGTCGACAATCTCTGCCCGGAGTGCAGCTTCGGCGATATCG
ACCTGGGCCTGGGCGGCGATGGCCGATGGCAGACACAGTGGGACTTCGTG
GACTGCGGCATGGCTGCTTCCGCCTGGTCTCAGCTACCCGGAGGCAGGCG
TAACCTCCGTGGCGCGGACGATGCGTCTCCGGATGCGTCCAAGCCCTTGA
TGCTCGGCCCGGGCATGTACGTGATGCCCGACGGCATCAAGGACTTGGAC
ACTGTCAAGGCCATGTTCCATGCAGGCAACGGGACCGCCGTCGCCGCCGC
CCTAAGTGGAGGGAACTAAGGAGAGGCAGGGAGAGCAGGGAACGCTGACG
AGAGGGTCGTCCTTTCCCTTATTTTTGATTATTTGTGTGCGGTGTCCCGG
CCTTGTTACGGTCGGGTGATTTTGAGTTAAAGAATTGGACGGCGATCGAT
AAAGTGTGAGTTAATGCAAGTAAATTATCAATTGCGGGCAGATGAGGTCC
TAGAGGTGGGAGGCGAGTGGGCAGCTGCGGGCAGAGGTACTGTGATCAGT
TGAGTGGTTCACCATGTGAGGAACTGAGACGGAAAGAACGACCTTAATAA
AAACCTGAAAAGAAAATGGGTTGGTACAGTAGAGGTCGGCCACGGCCGAG
TGACTGTGGTTACGGCTACATGTGAGTGAGAAGGAGTGAAGGAGAAATTG
GGAGCTCGACACTACATGCCCGGGCGCCTGAAAACAATTCAGAAAAACGG
AAATGAAGACCTCAAAGAAAAATGGTTCTTTCTAATAGAAAGGTCGCCCT
GACTACGCATGCTCTGCGTGTGTGAGAGACAGAGAGAGAGAGTCTGTGGA
TGTGATGTGGCTGACCTGTGTGCTTCTAGACGGGGAAATTATAAAAGACA
AAATATTAAAAAAAACGAGAGAACCCAGAAGAGGAAAACGTGGCTCATTA
TGCAGGTCCTTTGGATGGATTGAACGTTGGTAGAGCTGTGTCGGTACGTG
TGTGTGATAGAGAACGAGAAAGACAATAGGAGAATAGATGGAGCGTCCAG
GGATTGGGGCTGAGAGGCACGTCGACCGGGGGTCTTGTTGGTTGGTTGAG
GTCAGAGAGAGAGAGAGGAACCATCGAAATGAAAAAAAAAGGGAACCGTG
AAATACGAAA

protein sequence of jgi.p|Nanoce1779_2|610099

>mRNA_10185-protein ID=mRNA_10185-protein|Name=jgi.p|Nanoce1779_2|610099|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MLPRGFNGVGVTVAMNQAQYEGSCGKCIKLTGQGDGLGGTPVIGPIFATV
DNLCPECSFGDIDLGLGGDGRWQTQWDFVDCGMAASAWSQLPGGRRNLRG
ADDASPDASKPLMLGPGMYVMPDGIKDLDTVKAMFHAGNGTAVAAALSGG
N*

mRNA from alignment at scaffold_48:93754..96071+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10185 ID=mRNA_10185|Name=jgi.p|Nanoce1779_2|610099|organism=Nannochloropsis oceanica|type=mRNA|length=2318bp|location=Sequence derived from alignment at scaffold_48:93754..96071+ (Nannochloropsis oceanica)
ACAGCCACCACCACCAACCACCACCCTCTCAACAACAATGATGAAGTCTA
TCGCTTTCCTCTTGGCTTTCGCCTCCTCCGCTTCTGCTTTCAGTGGGCAG
GTAAGCACGACAAGTAGTGGTGGCACTACGGGCGGGACGGGAGGGGAAAG
ATCTACAGCTACACGTATGCTGAATCAGAGCCACACCTGGACCCACCTCT
CCTTTGTCTCCCTTTTCACCTATTCTCCCCTCTCACACCTCACCCGCAAC
AAGCTGCTCGCGAGAGTGTGCGAAAGTGTACATATCCCATCTCCGCCCTG
GCGGCCACCACCGCCCGTCCACCCGTACCCACTTACAACCACGTGTTTCA
CATATCTTCCCTGTCCCTCTTCCCTCATTCCATTCCCAGCCCACCTCTTC
TCGCGCACGCATAACCACTCACGGCTTCACCCCTTCCCCTCCCGACGCTC
TTTGACAGCCATCCCCACTTGTCGGCTACATACATAGCGAGGCCATACCA
CAGCGAACCCGACGTACCTAGCTACAATCCCACACCACACACACCCAGAC
ATCCACAAACTCACATCCACACACACCTCTCTCCTAATCTCGCACACCTT
CCACATCCTACACATCGCCACCCCTCCTTACCCTCCCACCCTTCCTCACC
GTTTCCTTTTTCCCACAGTCGACATTCTACGGCGCGGGCGGCGCCGGTCA
GGGCGGTGCCTGTATGCTTCCGCGAGGGTTTAATGGCGTGGGTGTAACTG
TGGCCATGAACCAGGCTCAGTATGAAGGCTCCTGCGGCAAGTGTATCAAG
GTACGTTTCTGTGGCGGTGAGGGCATGGAAACTGCCGCGGCGTTTCTTGG
GCTTTCATCTCGTGTCTCTCGTCGAGGAACTTTCCCTCCATGTCTCCATC
ACGCCCTTAACCCTAACTAATTATTTCCCTTCCATGCCTGTCTCTCTCGT
CACTCCATTCTACCCCCCCTTCCATAGCTGACTGGCCAGGGTGACGGCTT
GGGTGGCACCCCTGTGATCGGGCCCATCTTCGCGACCGTCGACAATCTCT
GCCCGGAGTGCAGCTTCGGCGATATCGACCTGGGCCTGGGCGGCGATGGC
CGATGGCAGACACAGTGGGACTTCGTGGACTGCGGTAAGTCACCCGCAAA
AGATGGGGAGAGGGAAGGGGGTTGAGGGATGATGATAGATGTCGACCGTC
GTGTGAACGTTGACTCCCTCGTCGCTCACCTTTTCCCATTTCTATCCTGG
AACACGAACGAATAGGCATGGCTGCTTCCGCCTGGTCTCAGCTACCCGGA
GGCAGGCGTAACCTCCGTGGCGCGGACGATGCGTCTCCGGATGCGTCCAA
GCCCTTGATGCTCGGCCCGGGCATGTACGTGATGCCCGACGGCATCAAGG
ACTTGGACACTGTCAAGGCCATGTTCCATGCAGGCAACGGGACCGCCGTC
GCCGCCGCCCTAAGTGGAGGGAACTAAGGAGAGGCAGGGAGAGCAGGGAA
CGCTGACGAGAGGGTCGTCCTTTCCCTTATTTTTGATTATTTGTGTGCGG
TGTCCCGGCCTTGTTACGGTCGGGTGATTTTGAGTTAAAGAATTGGACGG
CGATCGATAAAGTGTGAGTTAATGCAAGTAAATTATCAATTGCGGGCAGA
TGAGGTCCTAGAGGTGGGAGGCGAGTGGGCAGCTGCGGGCAGAGGTACTG
TGATCAGTTGAGTGGTTCACCATGTGAGGAACTGAGACGGAAAGAACGAC
CTTAATAAAAACCTGAAAAGAAAATGGGTTGGTACAGTAGAGGTCGGCCA
CGGCCGAGTGACTGTGGTTACGGCTACATGTGAGTGAGAAGGAGTGAAGG
AGAAATTGGGAGCTCGACACTACATGCCCGGGCGCCTGAAAACAATTCAG
AAAAACGGAAATGAAGACCTCAAAGAAAAATGGTTCTTTCTAATAGAAAG
GTCGCCCTGACTACGCATGCTCTGCGTGTGTGAGAGACAGAGAGAGAGAG
TCTGTGGATGTGATGTGGCTGACCTGTGTGCTTCTAGACGGGGAAATTAT
AAAAGACAAAATATTAAAAAAAACGAGAGAACCCAGAAGAGGAAAACGTG
GCTCATTATGCAGGTCCTTTGGATGGATTGAACGTTGGTAGAGCTGTGTC
GGTACGTGTGTGTGATAGAGAACGAGAAAGACAATAGGAGAATAGATGGA
GCGTCCAGGGATTGGGGCTGAGAGGCACGTCGACCGGGGGTCTTGTTGGT
TGGTTGAGGTCAGAGAGAGAGAGAGGAACCATCGAAATGAAAAAAAAAGG
GAACCGTGAAATACGAAA

Coding sequence (CDS) from alignment at scaffold_48:93754..96071+

>mRNA_10185 ID=mRNA_10185|Name=jgi.p|Nanoce1779_2|610099|organism=Nannochloropsis oceanica|type=CDS|length=1368bp|location=Sequence derived from alignment at scaffold_48:93754..96071+ (Nannochloropsis oceanica)
ATGCTTCCGCGAGGGTTTAATGGCGTGGGTGTAACTGTGGCCATGAACCA
GGCTCAGTATGAAGGCTCCTGCGGCAAGTGTATCAAGCTGACTGGCCAGG
GTGACGGCTTGGGTGGCACCCCTGTGATCGGGCCCATCTTCGCGACCGTC
GACAATCTCTGCCCGGAGTGCAGCTTCGGCGATATCGACCTGGGCCTGGG
CGGCGATGGCCGATGGCAGACACAGTGGGACTTCGTGGACTGCGGCATGG
CTGCTTCCGCCTGGTCTCAGCTACCCGGAGGCAGGCGTAACCTCCGTGGC
GCGGACGATGCGTCTCCGGATGCGTCCAAGCCCTTGATGCTCGGCCCGGG
CATGTACGTGATGCCCGACGGCATCAAGGACTTGGACACTGTCAAGGCCA
TGTTCCATGCAGGCAACGGGACCGCCGTCGCCGCCGCCCTAAGTGGAGGG
AACTAAATGCTTCCGCGAGGGTTTAATGGCGTGGGTGTAACTGTGGCCAT
GAACCAGGCTCAGTATGAAGGCTCCTGCGGCAAGTGTATCAAGCTGACTG
GCCAGGGTGACGGCTTGGGTGGCACCCCTGTGATCGGGCCCATCTTCGCG
ACCGTCGACAATCTCTGCCCGGAGTGCAGCTTCGGCGATATCGACCTGGG
CCTGGGCGGCGATGGCCGATGGCAGACACAGTGGGACTTCGTGGACTGCG
GCATGGCTGCTTCCGCCTGGTCTCAGCTACCCGGAGGCAGGCGTAACCTC
CGTGGCGCGGACGATGCGTCTCCGGATGCGTCCAAGCCCTTGATGCTCGG
CCCGGGCATGTACGTGATGCCCGACGGCATCAAGGACTTGGACACTGTCA
AGGCCATGTTCCATGCAGGCAACGGGACCGCCGTCGCCGCCGCCCTAAGT
GGAGGGAACTAAATGCTTCCGCGAGGGTTTAATGGCGTGGGTGTAACTGT
GGCCATGAACCAGGCTCAGTATGAAGGCTCCTGCGGCAAGTGTATCAAGC
TGACTGGCCAGGGTGACGGCTTGGGTGGCACCCCTGTGATCGGGCCCATC
TTCGCGACCGTCGACAATCTCTGCCCGGAGTGCAGCTTCGGCGATATCGA
CCTGGGCCTGGGCGGCGATGGCCGATGGCAGACACAGTGGGACTTCGTGG
ACTGCGGCATGGCTGCTTCCGCCTGGTCTCAGCTACCCGGAGGCAGGCGT
AACCTCCGTGGCGCGGACGATGCGTCTCCGGATGCGTCCAAGCCCTTGAT
GCTCGGCCCGGGCATGTACGTGATGCCCGACGGCATCAAGGACTTGGACA
CTGTCAAGGCCATGTTCCATGCAGGCAACGGGACCGCCGTCGCCGCCGCC
CTAAGTGGAGGGAACTAA

Synonyms

Publications